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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0574600 |
| Transcript ID | LotjaGi1g1v0574600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT1G11580.1 methylesterase PCR A; Swiss-Prot: sp|P09607|PME21_SOLLC Pectinesterase 2.1; TrEMBL-Plants: tr|I3SVI0|I3SVI0_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0574600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110890144..110897179) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGACAGTTATTAATAGTAGCAGTAATAATTTGTATTACCGAATTTACATTTTCTAAATTATTTGTATTTTTTATGA TTTATATATCTATAGTTTTATAAAATTAAAATATAGATAGTTTTTACACTACTGAAAGAAGTTTTTTAAAGTTTTTTAAA AATTGTTTAAATTATATGTAAGGTCAATAATGTTTAAGATGGATTGAATGAGTTAGATATTTTATCTATTGAAAGTAAAA TGATAAATGAAAACGATGATAAATGATTTTGCAGCTAAAAAAACTAAAAAATTGATAATTTATATAATATATTATGTCTC TTTAAAATTATTGTTAAAAAAAATTACTTTAACATTTTCGCCTCAGACCACAAAAAAGTTTATAAAAGGCCGTGTTCATA TCTCACTCCCATGTAAAGGTGAATTTGGGCGAGAACAGATATTTTTCCAATCCAAAAGCCTTGTATGAGATTCCACTGCT TGGCAAGCTTTTGTATATTTTATTATGAAAAGTATGGCGGAAAGAACAACACACTTCTACTTTGGAAAAAGTTATGTTAC CAGTAACATCTTCACCTTAATCAAATGTGAAGAGAAGAGAGATGAATAAGTGATAAGATTGGTGATTTAATAGAAAATAC AGAAAAAAAAAATAAGAAGAAAAATGAGTGTAAATAGGATAAAAGAAAAACTGAAGTATGTATATATCAAAAGTCGATTT TAGAGCTATAAAAAATTGTGCTAAATATACAGATCTAACGACTAGTGTGTACCCACGAGCTAGCAATAATACCCAAGTGG GGTTAAAATAATAACATATAAAACACACGCGCCATTGGATTTGTAAAATGGTTTTCTGGTCTATAAAAGGAACATGAAGA AATTAACAAGGATCATCAAGAGCTAGCAGCCAGTGAAATTGGAAAATGGCTACCCAACAACAATCTTTGCTAGACAAGCC TAGAAAATCCTTTTCCAAAACTTTCTGGTTATTCCTCTCTTTAGTTGCAATCATAAGTTCCTCAGCCCTTATTGCTTCTT ATCTCAAACCCACCTCCTTCAACCTCTTCTTGTCACCTCCCCATGGCTGTGAACATGCACTTGACGCATCATCATGCTTA GCTCATGTTTCAGAAGTATCTCAAAGCCCCATCTCAGCCACAAAAGATCCCAAACTGAATATTCTCATATCCTTAATGAC CAAGTCCACCTCACATATTCAAGAGGCTATGGTTAAAACAAAAGCTATCAAAAACCGGATTAACAACCCTAGAGAGGAAG CAGCTTTGTCTGACTGTGAGCAGCTAATGGACTTGTCCATAGACAGAGTGTGGGACTCAGTTATGGCTCTAACCAAAGAC AACACTGATTCACACCAAGATGCTCACGCATGGCTAAGCGGTGTTCTCACGAACCATGCAACTTGCTTGGATGGACTTGA AGGTCCTTCTCGAGCACTGATGGAGGCTGAGATTGAGGACTTGATTTCAAGATCAAAAACTTCCCTGGCCCTACTTGTTT CTGTTTTGGCTCCAAAGGGTGGTAATGAACAAATCATCGATGAACCACTAGATGGGGACTTTCCTTCGTGGGTGACCAGG AAGGATCGGAGGCTGTTGGAGTCTTCGGTAGGGGACGTAAATGCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAGGTT CAAGACTGTGGCTGAGGCTGTTGCATCGGCACCTGACAGCGGTAAGACAAGGTATGTTATCTATGTGAAGAAAGGAACCT ATAAGGAGAACATTGAAATTGGTAAGAAGAAGACGAATGTGATGCTCACTGGAGATGGTATGGATGCAACTATTATCACC GGGAACTTGAATGTCATCGATGGAAGTACCACATTCAAAAGTGCCACTGTTGGTATGGATCTAACTCAACTCATTGTCTT TTCCTAGTAAAGATACAAACTCAACCCCTTTATTTATTCATAAAAACTCTTGAGCTATAGAAAATTTGCTAGAAATTAAA TATCTGCATAGTATTTTATTTTTCTTTTAAACAATCTTCCAAAAGCTCCAAACACACCCTAAAAAGAGATAAGGACTAAT AATAATTAATGGACGGTCTACTCAGCACCATTGAATATTGACACAATGTATTAATGCTAGAAAGAAAAAGGTCATATGTA AAAAATATATATCATGTCATGTCGTTGTAGACAGAATTCCAACTTGTTAAGATAAGTAGTGGTTTTTAGGCTTTTTGAAA TTAAGCACTTGAATGATTTGATTTTGTAGCTGCTGTGGGCGACGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACAG CAGGACCAGAAAAGCACCAGGCAGTGGCTCTTCGTGTTGGAGCAGACCAATCCATCATAAACCGTTGTCGAATTGACGCT TACCAAGACACTCTCTACGCCCATACGAATAGACAGTTCTACCGAGACTCCTTCATCACAGGTACCGTTGACTTCATATT CGGAAACGCGGCTGTTGTGTTCCAAAAGTGCAATATAGTGGCCCGAAAGCCCATGAGTAACCAGAAAAACATGCTCACGG CCCAAGGGCGTGAAGACCCAAACCAAAACACAGGAACTTCAATTCAGCAATGTAACCTGACACCAAGCCAAGACCTTAAG CCCGTTGCGGGCTCCATTAAAACTTATTTGGGTCGCCCGTGGAAGAAGTACTCAAGAACTATTGTGCTACAGTCCTCAAT TGATAGCCATATTGATCCAACAGGATGGGCTGAGTGGGATGCTCAGAGTAAGGACTTTCTGCAGACATTGTATTATGGAG AGTACTTGAACAGTGGAGCAGGTGCTGGTACTGGTAAAAGAGTGAACTGGCCTGGTTTCCATGTCATTAAAACAGCAGCA GAGGCTAGCAAGTTCACTGTAGCACAACTCATCCAAGGTAATGTTTGGTTAAAAGGCAAGGGGGTTAACTTCATTGAGGG CCTTTAGATATATATAGGCTTCAGCAAGCTAGTGTGTTTATGTTCCAGATATGCTGGACTTTTCGTGAAATAATGTTTAA AACTTGTGTTGTATGGGAGAATAATGTTTTATGAAGGTTGAGAATTCACTAGCCTTGTTGTGCCACAAAATTTGTCATAT ATATCTATAAAATAAATGTTCTGTACAAGGTGAAAGATACTTTTTAAAAAATGTAGGACACCGGTGCAAAACTAAATGAT AAATTTGTTCTTAAATCAATATGAATTATACAAATTCACCATCACTATCCTATCTGCTTCATCCACGCATCATCATGCAA CCGCATAATCTTATGTCATTTTGAAACTTACTCAACCACCACAACTTGGATTAAAATCCTCTGTCCCCAAATCGTGTTTC ATTTCTACATGCACTTGTACCTCATCTGAGCAATCCATGTCTTGCTCCACCAACATTTTTCTCTCCCTCTTTCTTCTTCG TCCAATAAGCCTGACTTCTATCCCACCATTATGCTCATGCTTTGCTTCGCAGCAATATCGTCCTCATTCGCCCTCTATTT GTTAGCTCTATACCGCGGTGGACTAATCGATACTATTTGTAACATTCACAAGTTCAAGTCGTTGTGCGGTGCAGTCAAGT GTTGTGCTATGCCCGTTCCTGCTAAGGGTCACTACCTAAAATGGCCACCAGCCCACCATTAGAGTTCCAGAATTTTCCAT CTGATATTTTGTGATTTTTCAACTACCAAAGCACAAAGAAATTCCCATCACATCAAGAAATTTTGCACATCATAAGAAAC CTCAAACCTTGAGTCCGATGGTAAAAGGAATTGTAGAGGTCGCGTCAGCTAGATTTTATTAAGACAATCCAACATTTGTA TAGCGGGACCTCATGGCGACAATCCAACATTGTCGACATAGTGACAGGGAAGGACTCCTAAATCTTAATAGTGACTAGGA ACCATGTAAGGGGAAAAGATGGGGATCAAGTGAGGACAACATAGAAGGTGGATGGTAGGAGAGCAAAAGCAATACACGCC GTTAGTCAAACACGCAACCGTTCAGGGAGACCGACCGAATAACCTAACTAGATTTAGTGGCGGTTAGGAATATTACCCAC CTTAAGGACAATTTGGTTTTTTTGGAGAGTATTGTTAGGGTTCTAATTATGCGACCTTGTTGATTGTGGACCTGAGTTTA GTTTATTAGGTTTAGTTTATAAAGATTAAGAGTATCTTTATTTTAGGCGTTGATCTTTTATTTGATTAATCTATCTTTAT CGAGTTAGATTAATATAAATAGAAGTATTGTCATTAGGAGTTTTCAAGGATTTGATTATTGAGTAGTAAAAGGTTTTTAG CTTGTAAAGGGATTTTCCCTCGTTAAGAAGGTTTTCCTTCTTGGGTATATTTCTTTTAATAAAACCAGTTATTCCATTCA CGAAATTACCTCTTTCCCCTACTTTCAGTGTTGTTTGGCTGTTGGGGATTTCCAAGCCTAACAGATCTAGCTCTAGATGT TTCTTCTTTAACCCAATTTTCACATGTCTATAGGAGAAAGATGCCAGAAGTGAGGAGTTAAAGCACAACCCATAGGGAAA AATGAAGATAGTTAGTAGAAACAAATATAAACCCAGACTCCTAATTTTACATAAAAGGCAACAACCAAATATAGACCCAG TTTTTCTTATAAAAAATACTTGTTACATATGACTTATTGTATATATTATGCATGTTAAAATTTAATTTCCTTATAAGTTA TATGATCTTTGGCCTTGGTCCCTCCTGAGCCAAAATTCTGGGTCCACCACAGCCACTAAGGTTTTGCCTTAATCCTCTTT TTGCAAGGAGATTACAAACTGTTCTTACACGGACCTTCCCCTCTCAGATCTAGGGTTTAGAGCCGTCAAGACAATAGAAA CAAGAATAATGAGAACCTGTCTTATTGAATAGGGGGCTTAGCCTTTAATAGTGGGGCTAAACCCTAACCCTAAATCTATT ACATTTGGGCCTTGCCTCATCCTATTGGGCTTTTAATCAAGACGAGCCTGACTCTAACCTCCAGCCTAGATTCTAAGGAG TCGACCCGCCTAGGTCGACGATCCCTCCTGGTAGGGGTCGAGCCGCCCTGTTTAGGGCGAAACCGGTCCACAAACTATAT AAAACATTCTAACTTTGAAAGGCATAAAATATATTAAATTGAAATACAATGCAGCCCAAGGTGAAATTACCTTAATCTCA TAAAAAGTGATTAGAATCGCCCCAACCTTTCCAGCTATTTCAATTGTAGGCCTCTCTTGCCAGCACCTACAGGACACACT TATAAGAATCAGTAAGTTGTATAAATTTGAGATTGTGTAAGCTTATGGATAACTAGTTCATTGAATCAGTTCATTACTGT CATTTTAATCATTAGTGACTATGTCTAGTTAGCTAAACAATTTTTTAATCCACTGTTTCATGCCAATTGTTGACTTTTTA ATCCAAAGTGGACGAATTCACTCGAAACACAAACAACATGCATTATACATCATTGACTGGTACCAAACAATCATATAAAC ATCTTAATTTTACACCAAACAAGATACATATGAACTTGCTGCCATATTGTATCCATTTTTCTGTCATGCAGAATTCAAAA GCTCTAACCAAACATAATTTAATGTATTTTTTATTAAGATTATTGCACTGACTCCCAAATCATTCTTCTAAACATAACCT TAAAACACTTCATTAAGCTCACTGATGAATTCATGACCCACTCCATGCATGTTATGAAGTAATTCGTCCAAGTACTTCAA ACCAAAGACATACATGGACGATCAACAAAAGGGAAGGGAAGGGTGATTACACTCACCTAAATCCTTGGATTAAAGCTTCA ACTTTTGATTCCAAAATGAAGATACTGGTGATAAATAGCAAATGGGGCAGAGTTTGGTAAAAGATACAAGATCTCTCCCC TGCTTCTACTCAGAAGTGGCTCAATTTTATTGTTACTTAAAAAGGAGTTGATACTTATTTACCATCAGTATCAGAATGCG TACTCTTCAGAATACAAGTTGTTCATAAGTTAATTTTCCTATCAGAAGGAAACCTCTAGTTAAAATTTAAAACAGCATCA GAACAACACTTATAATTCTTAAAACATTACAGCAACACTAGAATTTTGGAGCAAGCATCCAAAGTCCACACTATAACTAA AATCAGCAAATATTATAATCCCAACACTATTAATAACATTTCACCAGAAATAGTAACCTTAGCATAACATTGACCCAAAT ATAATTAGTGTAAGGGAGAAAGATAAGTCCCAAAAACAGGGAGAATCAGATTGAATTTCTAAATATGCCACAAACAACGC AAGTCACTCTAATCAACACAAGTTATGAATTACTGGGGTTTCAGATTGTGATTTCTCTGCAATTGTTCTTCTTTCTCTGT TTGGATTTACCTGATGTTATCACTGGTATCAGAGCACCGATCTAGTACCCTAAAAAACCACGAGATTTGCAAGTTGCGTA TGAAGACAAGAAGAATGGCACGTACCGCAAAAGATTGGGAACAGGAACGCGAGGAAATAAGCACTCGCCAAAAAGCATGA GGACCAGATTGCTGAAATTGTGGCCAATTATGGCCAATTTCGTGAGAGAAGGCCCAATTTCGAGGAGAATACACAAGTGG AGGACGCACAGAGGTGGAAAATTGAAGGGAGACGTAATTCTTGTTGAAGGAAGTGACAGAAGACGAGAAGATGCAGGCGA CAGTAATGGCTTTAGAAGGTAAAGCCTTGAGTTGGTACCAGTGGTGGGAGAGATGCAACATGAATTCAAATTGGGAAGGG TTCAAGCTAGCTGTTATTCGCAAATTCCAGCCTTCAATGGTTCAAAATCCATTTTAATTGCTGCTTTCTTTCAAACAAAC TGGAACTATGAAGCAGTTTGTTGAAGGGTTTGAAAAATACGTTGGGGCTTTGGGGACAATTGATCAAGATTTTGTCATGG GAATCTTCTTTAATGGTTTGAAGGAGAAGATCCAAGGTGAGGTAAGACTCTATGAATTAAACACATTGTCAAGTGA
CDS sequence (LotjaGi1g1v0574600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCCAACAACAATCTTTGCTAGACAAGCCTAGAAAATCCTTTTCCAAAACTTTCTGGTTATTCCTCTCTTTAGT TGCAATCATAAGTTCCTCAGCCCTTATTGCTTCTTATCTCAAACCCACCTCCTTCAACCTCTTCTTGTCACCTCCCCATG GCTGTGAACATGCACTTGACGCATCATCATGCTTAGCTCATGTTTCAGAAGTATCTCAAAGCCCCATCTCAGCCACAAAA GATCCCAAACTGAATATTCTCATATCCTTAATGACCAAGTCCACCTCACATATTCAAGAGGCTATGGTTAAAACAAAAGC TATCAAAAACCGGATTAACAACCCTAGAGAGGAAGCAGCTTTGTCTGACTGTGAGCAGCTAATGGACTTGTCCATAGACA GAGTGTGGGACTCAGTTATGGCTCTAACCAAAGACAACACTGATTCACACCAAGATGCTCACGCATGGCTAAGCGGTGTT CTCACGAACCATGCAACTTGCTTGGATGGACTTGAAGGTCCTTCTCGAGCACTGATGGAGGCTGAGATTGAGGACTTGAT TTCAAGATCAAAAACTTCCCTGGCCCTACTTGTTTCTGTTTTGGCTCCAAAGGGTGGTAATGAACAAATCATCGATGAAC CACTAGATGGGGACTTTCCTTCGTGGGTGACCAGGAAGGATCGGAGGCTGTTGGAGTCTTCGGTAGGGGACGTAAATGCC AATGTTGTGGTGGCTAAGGATGGGAGTGGCAGGTTCAAGACTGTGGCTGAGGCTGTTGCATCGGCACCTGACAGCGGTAA GACAAGGTATGTTATCTATGTGAAGAAAGGAACCTATAAGGAGAACATTGAAATTGGTAAGAAGAAGACGAATGTGATGC TCACTGGAGATGGTATGGATGCAACTATTATCACCGGGAACTTGAATGTCATCGATGGAAGTACCACATTCAAAAGTGCC ACTGTTGCTGCTGTGGGCGACGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACAGCAGGACCAGAAAAGCACCAGGC AGTGGCTCTTCGTGTTGGAGCAGACCAATCCATCATAAACCGTTGTCGAATTGACGCTTACCAAGACACTCTCTACGCCC ATACGAATAGACAGTTCTACCGAGACTCCTTCATCACAGGTACCGTTGACTTCATATTCGGAAACGCGGCTGTTGTGTTC CAAAAGTGCAATATAGTGGCCCGAAAGCCCATGAGTAACCAGAAAAACATGCTCACGGCCCAAGGGCGTGAAGACCCAAA CCAAAACACAGGAACTTCAATTCAGCAATGTAACCTGACACCAAGCCAAGACCTTAAGCCCGTTGCGGGCTCCATTAAAA CTTATTTGGGTCGCCCGTGGAAGAAGTACTCAAGAACTATTGTGCTACAGTCCTCAATTGATAGCCATATTGATCCAACA GGATGGGCTGAGTGGGATGCTCAGAGTAAGGACTTTCTGCAGACATTGTATTATGGAGAGTACTTGAACAGTGGAGCAGG TGCTGGTACTGGTAAAAGAGTGAACTGGCCTGGTTTCCATGTCATTAAAACAGCAGCAGAGGCTAGCAAGTTCACTGTAG CACAACTCATCCAAGGTAATGTTTGGTTAAAAGGCAAGGGGGTTAACTTCATTGAGGGCCTTTAG
Protein sequence (LotjaGi1g1v0574600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQQQSLLDKPRKSFSKTFWLFLSLVAIISSSALIASYLKPTSFNLFLSPPHGCEHALDASSCLAHVSEVSQSPISATK DPKLNILISLMTKSTSHIQEAMVKTKAIKNRINNPREEAALSDCEQLMDLSIDRVWDSVMALTKDNTDSHQDAHAWLSGV LTNHATCLDGLEGPSRALMEAEIEDLISRSKTSLALLVSVLAPKGGNEQIIDEPLDGDFPSWVTRKDRRLLESSVGDVNA NVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKKGTYKENIEIGKKKTNVMLTGDGMDATIITGNLNVIDGSTTFKSA TVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSIINRCRIDAYQDTLYAHTNRQFYRDSFITGTVDFIFGNAAVVF QKCNIVARKPMSNQKNMLTAQGREDPNQNTGTSIQQCNLTPSQDLKPVAGSIKTYLGRPWKKYSRTIVLQSSIDSHIDPT GWAEWDAQSKDFLQTLYYGEYLNSGAGAGTGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 11 | 552 | 542 | 4.0E-235 | – | |
| PANTHER | 11 | 552 | 542 | 4.0E-235 | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 554 | 514 | - | – | |
| SMART | 47 | 196 | 150 | 2.5E-13 | ||
| Gene3D | 53 | 201 | 149 | 2.5E-10 | ||
| SUPERFAMILY | 55 | 196 | 142 | 1.06E-17 | ||
| Pfam | 55 | 190 | 136 | 1.8E-16 | ||
| TIGRFAM | 55 | 194 | 140 | 1.6E-14 | ||
| CDD | 57 | 200 | 144 | 1.74116E-33 | – | |
| Gene3D | 238 | 554 | 317 | 1.7E-131 | ||
| SUPERFAMILY | 239 | 553 | 315 | 4.08E-111 | ||
| Pfam | 241 | 540 | 300 | 6.5E-144 | ||
| ProSitePatterns | 266 | 285 | 20 | - | ||
| ProSitePatterns | 385 | 394 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0574600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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