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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0575400 |
| Transcript ID | LotjaGi1g1v0575400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G66370.1 myb domain protein 113; Swiss-Prot: sp|Q9FNV9|MY113_ARATH Transcription factor MYB113; TrEMBL-Plants: tr|A0A072TGV7|A0A072TGV7_MEDTR Myb transcription factor; Found in the gene: LotjaGi1g1v0575400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111025118..111027293) extracted from Lotus japonicus Gifu genome v1.2.
ATTTACTATGAGTTCGAGGCACAAAGTTGTACCTTGGTGGCTTGTTTGGCCCATTGTACTTGAGAAATACATGTATAAAA GAAGATGCTTTGGCTTTGAGAAAGTGAGAGGTGGTGTGAGTCTGAGAAGAGATGGGTGGTGTTGCTTGGACAGAAGAAGA AGATTACCTGCTCAAGAAATGCATACAGCAATACGGAGAAGGAAAGTGGCATCGCATTCCTCTATTGGCTGGTAATCTTA AATTCACTTTTTCTTTTCTTTTTCTTGAGTTTGCCGGTTGTATTCTCCTAGAAAATGAGTGCTCCATAATTTATAGCATG CTTGGACCCCCTTGCCCCCTTATCATTCCTGAGAATCAATTCTCAATTCTTTGAAACTATTCACAGAAACTTTTCCATAA AATTGACTATTGCTTTAGTATCAAGTGTGTAGAACGATTTCCAAAATGCACTTGATGGTAAAAAAGAAAATGGGATAGTT AGGCAAATTATATGATACCCTTTTAAAAATGAAGGGGCTTCATACCTTTTATCTTGATTTATCATGTTTTCCATCATCAA TTTTTTTTTTATAATTTGCAATCTAGGTTTTTGTATTAAAAAAATGAACTAAATGGTACCACACTCTTTCTATTTAAATG GGTACCGGAGCCAAGCCCAATTTATAAGGGTGAAATAACTTGTTCATTTGGTAATGGCCTGAGAGATTTATGTCAACAGA GCATGACTGTCATTGCATAAACTGAATCTTGCCAGAGATTGAGAAGAACTATTACACTGGAATGGACTTTTACATTTACA ATAAAAAGTTGTATTAAGTTTGTTCTTTGTTTTTTAATTGAGCTTATCCCTTCTTCAAAAGAAAGAAAAATTGTACAGTG AGACTACATTTTGGATAATACAAACAAACAAAAAAACCTTTTCAGCTGATTAGTTCTTCTTTAAATATTTGTGTGTTGAA GGTCTAAACAGGTGCCGAAAGAGTTGCAGGTTAAGATGGCTGAATTATCTTCGTCCAAACATCAAGAGAGGAAATTTTAC TGATGAAGAAGTTGAAATGATTGTCAAACTCCACAAATTATTAGGCAACAGGTCAACTTTGACTTTGCAGCCTTTCTTTT CATTTTTTTCAGTGTGTGTTAACCTCGTGGTTTTGTATTCATACTAACAGGCATTACTCTTTTGGGTAAATAATTTAGTT AATCACTGAATACATCAAATGCTCATGAGATAAGCATATACTTAAAAGCTGATTTGAGAACCATACTGAAATAAGCTCAA AATATAAGATATATATAGGTATGAGAGCCCATTCATAAGCTAATGTAAGCATGAAAATAAACTCAAAACAACTTATAAGT TGATTATAAACTATTTACATATGCTCTTCAAAACACTTGCACATGTGTATATGCTATTACATAAATTCAAACAAACTCCT TCAAACATGGCCTAAGCATGTTGCAACTCTTTTCCAGGTGGTCACTGATTGCTGGAAGGCTACCAGGAAGGACTGCTAAT GATGTGAAAAACTATTGGAACTGTCATCTGAGTAAAAAACTAAATGCTCAAGAAGCTGAAGATCACAGAGAACTAACAAA AGATGTTCAAGTCATTAGACCCCAGCCTAGAAACATAGGTTCAAGCTCAATGAAGAGGATGAGCCAGAGTGAGTCTCCAA CTGACCAAGGAGTTCAACAAGAGAATATTGGCGTGACATTTGATGCTGGAGGGCAGAGTCATAATCCTGAATCACAACAA GAGAGCATGTATCCAGGCTTGAACCAACAGGGCATGGTTGGTTGTGAGTTTCCAATGGACTTTCAATTAGAAGGATTTGA AACAATGGCAAGTGGAGAGGGTAGTAGCAGCCAGTGGAATTGGGATGATTTGTTCTTGGACATGGATCCTTATAACGAAT TTTCTTCTTAGATTATGATCCTGCTACGGTAGAGAAAGCCTAGGTGTTGTACCTGGCTGTGTATCAATGTTAAGGTTAAA ATGTTTTGAGGAAAATGGTGGCCACATTGATGTATTTTCACTCGAATGGAACATCATGCCTTTCTCTCAAATCAGACCAT TGCTTTAAATAAATTTAGCTCTAACTATTGTCGTGTGTGTTGGCTAAGAAAGCAACACAATGATTCTCTAAACAAACAAT TACTCGAAGAAGTGAC
CDS sequence (LotjaGi1g1v0575400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTGTTGCTTGGACAGAAGAAGAAGATTACCTGCTCAAGAAATGCATACAGCAATACGGAGAAGGAAAGTGGCA TCGCATTCCTCTATTGGCTGGTCTAAACAGGTGCCGAAAGAGTTGCAGGTTAAGATGGCTGAATTATCTTCGTCCAAACA TCAAGAGAGGAAATTTTACTGATGAAGAAGTTGAAATGATTGTCAAACTCCACAAATTATTAGGCAACAGGTGGTCACTG ATTGCTGGAAGGCTACCAGGAAGGACTGCTAATGATGTGAAAAACTATTGGAACTGTCATCTGAGTAAAAAACTAAATGC TCAAGAAGCTGAAGATCACAGAGAACTAACAAAAGATGTTCAAGTCATTAGACCCCAGCCTAGAAACATAGGTTCAAGCT CAATGAAGAGGATGAGCCAGAGTGAGTCTCCAACTGACCAAGGAGTTCAACAAGAGAATATTGGCGTGACATTTGATGCT GGAGGGCAGAGTCATAATCCTGAATCACAACAAGAGAGCATGTATCCAGGCTTGAACCAACAGGGCATGGTTGGTTGTGA GTTTCCAATGGACTTTCAATTAGAAGGATTTGAAACAATGGCAAGTGGAGAGGGTAGTAGCAGCCAGTGGAATTGGGATG ATTTGTTCTTGGACATGGATCCTTATAACGAATTTTCTTCTTAG
Protein sequence (LotjaGi1g1v0575400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGVAWTEEEDYLLKKCIQQYGEGKWHRIPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFTDEEVEMIVKLHKLLGNRWSL IAGRLPGRTANDVKNYWNCHLSKKLNAQEAEDHRELTKDVQVIRPQPRNIGSSSMKRMSQSESPTDQGVQQENIGVTFDA GGQSHNPESQQESMYPGLNQQGMVGCEFPMDFQLEGFETMASGEGSSSQWNWDDLFLDMDPYNEFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 1.3E-86 | – | |
| ProSiteProfiles | 1 | 50 | 50 | 17.325 | ||
| PANTHER | 1 | 222 | 222 | 1.3E-86 | ||
| SMART | 2 | 52 | 51 | 4.7E-14 | ||
| Gene3D | 4 | 56 | 53 | 4.8E-17 | – | |
| SUPERFAMILY | 5 | 97 | 93 | 2.93E-28 | ||
| Pfam | 5 | 50 | 46 | 1.5E-15 | ||
| CDD | 5 | 50 | 46 | 6.94449E-12 | ||
| ProSiteProfiles | 51 | 105 | 55 | 25.842 | ||
| SMART | 55 | 103 | 49 | 1.9E-16 | ||
| Pfam | 56 | 98 | 43 | 8.2E-14 | ||
| CDD | 58 | 101 | 44 | 3.62137E-12 | ||
| Gene3D | 58 | 124 | 67 | 6.8E-20 | – | |
| MobiDBLite | 127 | 177 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0575400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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