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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0576400 |
| Transcript ID | LotjaGi1g1v0576400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic; TrEMBL-Plants: tr|I1N4S0|I1N4S0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0576400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111507878..111510944) extracted from Lotus japonicus Gifu genome v1.2.
ATACAACCTTACAGTTATTTCCCATTCGCCAGAAAAAAAAAATATACAACCCAGAGAGTTTGTCGTGACACTGCTCTCAA GATTTTGTCATTCAAAACATAGAGCGGTGAGCACTCCACTGTGTCTGTGTGAAGCAGAAAATATCAGCAAGGCTTGGAAC AACCGAACAACTATCGCCTCAGACTCTCAGGTACCTCAAACCTTATTTCTATCAAGTTTTTCACTTTAGGTAGGGTGTAT ATAGCGGTAAAATAAAATTAGATGGCACAGGAACCCTATGTTGTTGCTTCTTATTTTAAATTGTTTTGAGTAATTTGGGT TTTCCATTTCCTTTCTTTCTTTTTAGGATTTTATTTTATGTAAACCATTTGTGTAACCATAGTTTCTTTTGGGTTCTTGC TTAATTACAGGTATACCATAGCTTTGTGAGACTGGAAAGCAACATCATAACTTAATTCATTCATATTCATATATTTTTCT AAAATAGCTGAAACACTTAGGAACCTGTTCAATAAGAGTCTGATGAGGGTGCTTCAGAGTCCCCAACATGTCAGGCAAGC TCCATTTCAAACCCACCTCTGCTACACTTCCCATGTCTCATCAAGGCTGCCAGTTTGTTTTGTTTCAATCAACCCTTCCG CCAACCCGGTAAAAGATATCAAGAGCAACAACAACAACAACAACAACCAGTTGATACAGTCGTTATGTAGAGGTGGAAAC CATAAGCAAGCCCTTGAGGTCCTGTGGAGCGAGCGCAATCCGAGCCATAAGACTATTGAGGTCTTAATACAGTCTTGCGC GCAGAAGAGTTCGTTTTCCGATGGCCGTGATGTTCATCGCTATCTTGTCGATAGTGGTCTTGACCAAGACCCGTATTTAG CTACTAAACTTATCAACATGTACCATGAGCTTGGGTCTCTCGATTGTGCGCGTAAGGTGTTTGATGAAACTCGCGAAAGA ACCATCTATATCTGGAACGCGTTCTTCCGAGCGTTGGCGATGGTGGGTCGTGGCGAGGAGCTGTTAGAATTGTATAGGCA GATGAACTGGAGTGGGATTCCGTCGGATAGGTTCACATATACGTATGTGCTTAAGGCTTGCGTTGTTTCAGAGTTTTCAG TCTACCCTCTCCAGAAGGGCAAGGAGATTCATGCCAATATTCTGCGACATGGCTATGAAGAAAACATTCATGTTATGACA ACTCTGTTGGATGTATATGCTAAGTTTGGCTGCATATCCTATGCAAATTCTGTGTTTCGTGCAATGCCTGCCAAGAACTC CGTGTCATGGAGCGCTATGATTGGATGTTACGCAAAGAATGACATGCCTGTAAAAGCACTGGAACTGTTTCATCAGATGG TGCTTGAGGCTTGTGATTCAATTCCAAATTCAGTTACAATGGTTAGTGTGCTTCAAGCTTGTGCAGGTCTTGCTGCATTG CAGCAGGGAAAGTTGGTTCATGGCTTTATCCTTAGAAGGGGTCTTGATTCTATAATGCCAGTTATTAACGCCCTTATAAC AATGTACGGACGATGTGGTGAGATTTCAATTGGAGAAAGAGTATTTGATAAGGTGAAGAATCCTGATGTTGTTTCATGGA ATTCTTTGATTTCCATGTATGGTAATAACGGATATGGAAAGAAAGCAATTCAAATTTTTGAAAATATGATACACCAAGGA GTTTCACCAAGTTACATATCATTCATTACTGTTTTGTGTGCTTGTAGTCACGCAGGCCTTGTTGAGGAGGGAAAGATTTT GTTTGAATCTATGCTTAGTAAGTACAGAATCCATCCAGGTATGGAGCATTATGCCTGTATGGTTGATCTTCTTGGCCGAG CTAACAGGTTAGATGAAGCAATCAAACTAATAGAAGATATGCCTTTTGAACCAGGACCAACAGTTTGGGGTTCCCTTCTT GGATCTTGTAGGATTCACTGTAATGCTGAGCTTGCAGAGAGAGCAAGCGCTATGCTTTTTGAGTTGGAGCCTTGGAATGC TGGCAATTATGTTCTTTTAGCTGATATTTATGCAGAAGCTAAGATGTGGAGTGATGTAAAGAGTGTGAGGAAGCTAATGG GAAAACGTGTGCTGCAAAAGGTTCCTGGTTGCAGTTGGATTGAAGTTAAAAAGAAAATATACTCATTTGTCTCTAGTGAA GAGGATAACCCACAGATTGAAAAACTCCGTGCTTTACTAATTAAATTATCAACTGAGATGAAGGAGCAAGGTTATGCCCC CCAGACAAACATTGTTCATTATGATCTTGATGAAGGAGAGAAGGAAAGAATTTTACTGGGACACAGTGAAAAGCTTGCTG TTGCTTTTGGACTCATTAATACTGTGAAAGGTGAAACCATTAGGATCACAAAAAACTTGAGATTATGTGAAGACTGTCAT GCTTTTACAAAGTTCATTTCCAAATTTGCTAATAGGGAGATTCTTGTTAGAGATGTGAACCGCTTCCACTGTTTTAGAGA TGGAGTCTGTTCCTGTGGTGAATATTGGTAGTTCAGGGCAGAATACAATGCTGTTCAAATGCTTCTGTAAGTATTCTAAT ATAGAGGAATACATCGAATGATGTTATGGCTTCAAGTTCAAACACAAAAGCTCCAATTCTACTGCACTTTTATTGTCTCT TGGTGTCATGAAATTCAATCTTTATTAAAACAAAAAAAATTGAGAACATCCAACTTCTAGTCGCTTGATCATAAATGCTC TTACATCTTATCAAGAAAATTTTCTTAAAGTTTATTATGCTACTGGGTGAGGACTAGTTTTCTGATATCTGAACATTGTG TTTTCATTGTAATCAGTTTGCTGCTTATTTAAGGTAATTAAGTTCCAGTCTCAGATGGCAAAGACATGTGGTGTCAAAGG TGAGGTGTGTGAGCCATCAAAGAATTTAAGAATCATTTAACTCACATTTTATTGAATAATTAATCGAGTGCGTGCCTTGT TGGGAAACCTCATGATCAAGTTCAGATAGGATAGCTCGCAGACTCGCAGATCCAGCCAAATTGAGAATTTTGGGTTCTGT CAACGATGGAACTGATTTCACTTCTAA
CDS sequence (LotjaGi1g1v0576400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGTGCTTCAGAGTCCCCAACATGTCAGGCAAGCTCCATTTCAAACCCACCTCTGCTACACTTCCCATGTCTCATC AAGGCTGCCAGTTTGTTTTGTTTCAATCAACCCTTCCGCCAACCCGGTAAAAGATATCAAGAGCAACAACAACAACAACA ACAACCAGTTGATACAGTCGTTATGTAGAGGTGGAAACCATAAGCAAGCCCTTGAGGTCCTGTGGAGCGAGCGCAATCCG AGCCATAAGACTATTGAGGTCTTAATACAGTCTTGCGCGCAGAAGAGTTCGTTTTCCGATGGCCGTGATGTTCATCGCTA TCTTGTCGATAGTGGTCTTGACCAAGACCCGTATTTAGCTACTAAACTTATCAACATGTACCATGAGCTTGGGTCTCTCG ATTGTGCGCGTAAGGTGTTTGATGAAACTCGCGAAAGAACCATCTATATCTGGAACGCGTTCTTCCGAGCGTTGGCGATG GTGGGTCGTGGCGAGGAGCTGTTAGAATTGTATAGGCAGATGAACTGGAGTGGGATTCCGTCGGATAGGTTCACATATAC GTATGTGCTTAAGGCTTGCGTTGTTTCAGAGTTTTCAGTCTACCCTCTCCAGAAGGGCAAGGAGATTCATGCCAATATTC TGCGACATGGCTATGAAGAAAACATTCATGTTATGACAACTCTGTTGGATGTATATGCTAAGTTTGGCTGCATATCCTAT GCAAATTCTGTGTTTCGTGCAATGCCTGCCAAGAACTCCGTGTCATGGAGCGCTATGATTGGATGTTACGCAAAGAATGA CATGCCTGTAAAAGCACTGGAACTGTTTCATCAGATGGTGCTTGAGGCTTGTGATTCAATTCCAAATTCAGTTACAATGG TTAGTGTGCTTCAAGCTTGTGCAGGTCTTGCTGCATTGCAGCAGGGAAAGTTGGTTCATGGCTTTATCCTTAGAAGGGGT CTTGATTCTATAATGCCAGTTATTAACGCCCTTATAACAATGTACGGACGATGTGGTGAGATTTCAATTGGAGAAAGAGT ATTTGATAAGGTGAAGAATCCTGATGTTGTTTCATGGAATTCTTTGATTTCCATGTATGGTAATAACGGATATGGAAAGA AAGCAATTCAAATTTTTGAAAATATGATACACCAAGGAGTTTCACCAAGTTACATATCATTCATTACTGTTTTGTGTGCT TGTAGTCACGCAGGCCTTGTTGAGGAGGGAAAGATTTTGTTTGAATCTATGCTTAGTAAGTACAGAATCCATCCAGGTAT GGAGCATTATGCCTGTATGGTTGATCTTCTTGGCCGAGCTAACAGGTTAGATGAAGCAATCAAACTAATAGAAGATATGC CTTTTGAACCAGGACCAACAGTTTGGGGTTCCCTTCTTGGATCTTGTAGGATTCACTGTAATGCTGAGCTTGCAGAGAGA GCAAGCGCTATGCTTTTTGAGTTGGAGCCTTGGAATGCTGGCAATTATGTTCTTTTAGCTGATATTTATGCAGAAGCTAA GATGTGGAGTGATGTAAAGAGTGTGAGGAAGCTAATGGGAAAACGTGTGCTGCAAAAGGTTCCTGGTTGCAGTTGGATTG AAGTTAAAAAGAAAATATACTCATTTGTCTCTAGTGAAGAGGATAACCCACAGATTGAAAAACTCCGTGCTTTACTAATT AAATTATCAACTGAGATGAAGGAGCAAGGTTATGCCCCCCAGACAAACATTGTTCATTATGATCTTGATGAAGGAGAGAA GGAAAGAATTTTACTGGGACACAGTGAAAAGCTTGCTGTTGCTTTTGGACTCATTAATACTGTGAAAGGTGAAACCATTA GGATCACAAAAAACTTGAGATTATGTGAAGACTGTCATGCTTTTACAAAGTTCATTTCCAAATTTGCTAATAGGGAGATT CTTGTTAGAGATGTGAACCGCTTCCACTGTTTTAGAGATGGAGTCTGTTCCTGTGGTGAATATTGGTAG
Protein sequence (LotjaGi1g1v0576400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVLQSPQHVRQAPFQTHLCYTSHVSSRLPVCFVSINPSANPVKDIKSNNNNNNNQLIQSLCRGGNHKQALEVLWSERNP SHKTIEVLIQSCAQKSSFSDGRDVHRYLVDSGLDQDPYLATKLINMYHELGSLDCARKVFDETRERTIYIWNAFFRALAM VGRGEELLELYRQMNWSGIPSDRFTYTYVLKACVVSEFSVYPLQKGKEIHANILRHGYEENIHVMTTLLDVYAKFGCISY ANSVFRAMPAKNSVSWSAMIGCYAKNDMPVKALELFHQMVLEACDSIPNSVTMVSVLQACAGLAALQQGKLVHGFILRRG LDSIMPVINALITMYGRCGEISIGERVFDKVKNPDVVSWNSLISMYGNNGYGKKAIQIFENMIHQGVSPSYISFITVLCA CSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMPFEPGPTVWGSLLGSCRIHCNAELAER ASAMLFELEPWNAGNYVLLADIYAEAKMWSDVKSVRKLMGKRVLQKVPGCSWIEVKKKIYSFVSSEEDNPQIEKLRALLI KLSTEMKEQGYAPQTNIVHYDLDEGEKERILLGHSEKLAVAFGLINTVKGETIRITKNLRLCEDCHAFTKFISKFANREI LVRDVNRFHCFRDGVCSCGEYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 50 | 80 | 31 | 5.448 | ||
| Gene3D | 50 | 201 | 152 | 5.3E-22 | ||
| PANTHER | 55 | 194 | 140 | 3.5E-102 | – | |
| ProSiteProfiles | 81 | 115 | 35 | 6.675 | ||
| ProSiteProfiles | 116 | 146 | 31 | 7.015 | ||
| ProSiteProfiles | 147 | 181 | 35 | 9.054 | ||
| Pfam | 150 | 179 | 30 | 0.034 | ||
| ProSiteProfiles | 182 | 220 | 39 | 5.064 | ||
| Gene3D | 203 | 307 | 105 | 1.8E-18 | ||
| PANTHER | 203 | 309 | 107 | 3.5E-102 | – | |
| ProSiteProfiles | 221 | 251 | 31 | 6.862 | ||
| Pfam | 251 | 301 | 51 | 1.4E-7 | ||
| ProSiteProfiles | 252 | 286 | 35 | 10.041 | ||
| TIGRFAM | 254 | 280 | 27 | 1.6E-6 | ||
| ProSiteProfiles | 289 | 323 | 35 | 5.656 | ||
| PANTHER | 306 | 519 | 214 | 3.5E-102 | – | |
| Gene3D | 308 | 417 | 110 | 3.6E-22 | ||
| ProSiteProfiles | 324 | 354 | 31 | 5.7 | ||
| Pfam | 329 | 352 | 24 | 1.4 | ||
| Pfam | 354 | 402 | 49 | 1.9E-10 | ||
| ProSiteProfiles | 355 | 389 | 35 | 12.408 | ||
| TIGRFAM | 357 | 390 | 34 | 3.5E-7 | ||
| ProSiteProfiles | 390 | 420 | 31 | 7.125 | ||
| Gene3D | 418 | 577 | 160 | 4.4E-10 | ||
| ProSiteProfiles | 426 | 456 | 31 | 7.388 | ||
| Pfam | 430 | 453 | 24 | 0.034 | ||
| TIGRFAM | 430 | 453 | 24 | 0.0031 | ||
| ProSiteProfiles | 492 | 526 | 35 | 5.634 | ||
| Pfam | 528 | 652 | 125 | 1.0E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0576400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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