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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0577200 |
| Transcript ID | LotjaGi1g1v0577200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151QTL3|A0A151QTL3_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi1g1v0577200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111643594..111647164) extracted from Lotus japonicus Gifu genome v1.2.
AGCTTGACACCCTTGAAATATAAGTAAACAAACTCACTCCCCTCTCACTACTAGACATGGTTTAATTACTTATGGATAGT ACTTTCACCAAACAACATGACCACCTGAAGCATTGTGCCCCTGCCCCATTGGTGAAAATTAGAAAGTCCCCAAATCAGAA CAACAACAACCCATTTTCAATCCTGGTCTTCTGGGTCTCCAAATCCCTTCGAAGCTTGTGTTTCAGAGTTCACTTCTCAC AACAAGGGTTATGCTTCAGAACGATTCAGTACCCTGGCATGGTGATTGAAACCACCACTACTACTACTACTACTACTGTT CTCTATGCTTCTTCATCAATGGAGGGTTTGAGTTTGGCTGAGAAGAAGAATGAAGTTGTTGTTCAAGAAAATGGAACCCT TGCTGCTGATTTGATTGAAGAAAAGGGTCGTGAGAGCAGTTTCAGCTCCGAGTTTCTGTCTTCTGAGACCACCACTGCTC ATGAAGAACAAAGTCGGAGCAGCACTGAGGATTCTTCATCTTCACCGTCTTCAATGGGGTGGCCGGTTCAGGAAATCGCT GCTTCTTCAGATTGCGAGGAAAAGCACTTGGAGAATGAGAAATTTGAGAAACAAGCTTCAGCATTATCAGGTTTTCATTT TTGTGGTTTATGCACAACCCCTTTTTTCTAATTTAATTTTTACTGATTTGTTTGGTGATTTGATGTGGTAGAGATTGAAA TGATGAAGGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTCCCTACAGCCTTGGCT ATCTCAAACGCGATAACGAACTTATGTGGTATGTAAAACTCACACCTAAGGCGGCTGTGTTTGGTTTTCAGTTTGGAAGT CCGTTTGGGGCATTGGAATTCGAGATCACAATTTTCAATGCCCCAAACGTGTTTGAGGCTTTGGACCTCTGTTAGGTGAA AGCACTTTCAAACTGAAAACCAAACATACACTAAAACTGTTTTGATGCTCTTATTTGGTTGTGCTTTATTAATGAATGCA ATTTTCGCCTCTGATTGTTATTGTTCATCGCGTTATTGAATATGCAGCTACCATTTTTGGGCAACTTTGGAGATTAGAGC CTCTTCGTGCAGAGAAGAAATCAATGTGGCGAAGAGAGATGGAGTGGCTTCTTTCTGTCAGTGATCATATAGTTGAATTA ACACCTAATTGGCAAACCTTTCCGGATGGAAGCAAGCTTGAGGTACAACTGGAAATATAAATGATTAATGTAGCTGTTTG ATGTACTTTTTGGTTATGAAGATGTTCTTATTTTCCCCTCTTTTCTTTCACAAATAGTTTATGCATGACCCCAATATCTG GTAATGACAAAATTGAAATTATACTCTCAGTCTCTCACCTGTAGTGAAATAAATGGGAAAGCTTTAAAGTAACTTATGCC AGTAGATACAGGGCAAAATGATTGAGTATGGACTGTGGAGTGTAAATTGAAATTGTAAGATAACAATGTAAAATTATGCG ACTTGGTTAAGTTACTTGACCTAAATAAATTTTAAGAGTCTTACAAGTAAATTTACTCGTGCTTGAAATGTATTGAACCC ATTTTGTAGGTTAGTCATGAAAGTAAGTTGAGTCCAGGAAGAATTAGGTTTATTTATTTTGTTAGCCATATTTACTTCAT TTCTGTCTCTCCCAAATGAATGGAGTGCATTATAATTTTTTTATCCTTTATTTGGCTGTGAATTTCATGTCACCATTCAA ATTAAAGTTTTTTTTTTGAAATGGGGGAGAATATCTATTTTTTTCCCTTTAGTGATTAAGCTTTCTTGTTTGTGGTAAAT TGTTGGTTAATGATTAACAATATTTTTGAAATGTGAATCAGGTCATGACTTGTCGGCCCCGCTCAGATCTTTATGTCAAT CTTCCAGCTTTGCGCAAATTAGACAACATGCTTCTTGTAAGATTTCTCACATTAATTGTACATCAGTAGCCCATTATTAA GAAATAGACTATTCTAAAATTTAGTATTTTCGCAGGAAATTCTAGATAGTTTTGTCAATACAGAGTTCTGGTATGTAGAC CAAGGTGTTATAGCTCCAGATGCTGACGGTCCATCTTCTTTTCGACAAGCACAGAGGCAAGAGGAGAAATGGTGGCTTCC TGTACCCCGAGTTCCCCCTTGTGGCCTCCATGAAAATTCAAGGAAGCAGTTGCAGCACAAGCGTGATTGCACAAACCAAA TACTAAAAGCAGCAATGGCCATTAACAGCATTACTTTAGCTGAAATGGACATTCCTGAGTCTTATTTGGAATCTCTTCCA AAGGTATGATTACTTTTCTATTAATTTTTTTTAAACATTATGAGGGCAAATGGCGTAATTGTCAAATTGGGAACCGGACT TTCTTTCAGAATGCTCGAGTCAGCTTGGGGGATGTCATTCATCGTTATATCACATCAGAACATTTTACTCCTGAGTGTTT GCTTGCTTGCCTTGATCTATCTTCTGAACATCAAGCTTTAGAAATTGCCAACCGAGCTGAGGCTTCCATGTATATTTGGC ATAAAAGAACCAATTCAAAGCCCGCCAATGTCAGTGCCAGAACTAGTTCAAGATCGTCATGGGAAATGGTCAAGGATCTA ATGGTTGATGCTGACAAGAGGGACTTGTTTGCGGAGAGAGCAGAAAGCCTTCTGCATTCCTTGAAACAGCGTTTTCCTGG TCTCCCTCAAACTTCCCTGGATATGAGCAAAATTCAATACAACAAGGTTCACATTTATTATATTCAGGCTAAGAGTTTTT TTGTTTTTGTTTCTTTGTTTCTTGAACATGAACAAGTTTGATCTTATTCCTTTTTAAATCTTTTGTAATCTCTAGGATGT TGGGAAAGCGATTCTGGAGAGCTACTCGCGCGTGCTTGAGAGTTTGGCTTTTAACTTGGTAGCACGGATTGACGACGTGC TCTATGTAGATGACTTGACCAAACATTCTGATCAAATCCCACCTCTCTCAAAAGTTGGTGTTATTACTCACAAGAACATT TCAGTTCCATACTCAGTGCCTGTCCCAAGCACTCCATACAGATCTGCTTTCGCCACACCGACGCTCTCTCCCGCACATGG CGTTAGCCCTGCAAATGGAGGAAAATCCCCACTCAGCAATGGCAGCAACCTTCCCCAGAGAAGGGTAGGGGTGAAAAAAG CTTTGACTGATTTTCTCAGCATTGATACAAATGGGAAGAACTGTGGTAGTTCCACTGAGGAACCAGTTTCAGAATCTGCA ATTCTTGATGAACTGTCAGCATTTGGAACAGATGTGGACTCCAGCACAGAAGATGCTGTTAGCTCAAGTATCATGGACCA GGCATGACAAGTGTAAAAGGCTATTGTTGATCTTTTATGGCCTTGCCATTTATCTAGTTTTTTTCTTTAGAGGAAGGTTG AAGTCTTTGTATGTATATGAATTATGAAATACGTAGAAGGACTCACTTATTTAGAGTGGATAGTGTTTTATACCATTACC TGTAATATTAATGAGGTGCCTCTAATAGGGTTATCATTCCCTTTTCTACTA
CDS sequence (LotjaGi1g1v0577200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGTACTTTCACCAAACAACATGACCACCTGAAGCATTGTGCCCCTGCCCCATTGGTGAAAATTAGAAAGTCCCC AAATCAGAACAACAACAACCCATTTTCAATCCTGGTCTTCTGGGTCTCCAAATCCCTTCGAAGCTTGTGTTTCAGAGTTC ACTTCTCACAACAAGGGTTATGCTTCAGAACGATTCAGTACCCTGGCATGGTGATTGAAACCACCACTACTACTACTACT ACTACTGTTCTCTATGCTTCTTCATCAATGGAGGGTTTGAGTTTGGCTGAGAAGAAGAATGAAGTTGTTGTTCAAGAAAA TGGAACCCTTGCTGCTGATTTGATTGAAGAAAAGGGTCGTGAGAGCAGTTTCAGCTCCGAGTTTCTGTCTTCTGAGACCA CCACTGCTCATGAAGAACAAAGTCGGAGCAGCACTGAGGATTCTTCATCTTCACCGTCTTCAATGGGGTGGCCGGTTCAG GAAATCGCTGCTTCTTCAGATTGCGAGGAAAAGCACTTGGAGAATGAGAAATTTGAGAAACAAGCTTCAGCATTATCAGA GATTGAAATGATGAAGGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTCCCTACAG CCTTGGCTATCTCAAACGCGATAACGAACTTATGTGCTACCATTTTTGGGCAACTTTGGAGATTAGAGCCTCTTCGTGCA GAGAAGAAATCAATGTGGCGAAGAGAGATGGAGTGGCTTCTTTCTGTCAGTGATCATATAGTTGAATTAACACCTAATTG GCAAACCTTTCCGGATGGAAGCAAGCTTGAGGTCATGACTTGTCGGCCCCGCTCAGATCTTTATGTCAATCTTCCAGCTT TGCGCAAATTAGACAACATGCTTCTTGAAATTCTAGATAGTTTTGTCAATACAGAGTTCTGGTATGTAGACCAAGGTGTT ATAGCTCCAGATGCTGACGGTCCATCTTCTTTTCGACAAGCACAGAGGCAAGAGGAGAAATGGTGGCTTCCTGTACCCCG AGTTCCCCCTTGTGGCCTCCATGAAAATTCAAGGAAGCAGTTGCAGCACAAGCGTGATTGCACAAACCAAATACTAAAAG CAGCAATGGCCATTAACAGCATTACTTTAGCTGAAATGGACATTCCTGAGTCTTATTTGGAATCTCTTCCAAAGAATGCT CGAGTCAGCTTGGGGGATGTCATTCATCGTTATATCACATCAGAACATTTTACTCCTGAGTGTTTGCTTGCTTGCCTTGA TCTATCTTCTGAACATCAAGCTTTAGAAATTGCCAACCGAGCTGAGGCTTCCATGTATATTTGGCATAAAAGAACCAATT CAAAGCCCGCCAATGTCAGTGCCAGAACTAGTTCAAGATCGTCATGGGAAATGGTCAAGGATCTAATGGTTGATGCTGAC AAGAGGGACTTGTTTGCGGAGAGAGCAGAAAGCCTTCTGCATTCCTTGAAACAGCGTTTTCCTGGTCTCCCTCAAACTTC CCTGGATATGAGCAAAATTCAATACAACAAGGATGTTGGGAAAGCGATTCTGGAGAGCTACTCGCGCGTGCTTGAGAGTT TGGCTTTTAACTTGGTAGCACGGATTGACGACGTGCTCTATGTAGATGACTTGACCAAACATTCTGATCAAATCCCACCT CTCTCAAAAGTTGGTGTTATTACTCACAAGAACATTTCAGTTCCATACTCAGTGCCTGTCCCAAGCACTCCATACAGATC TGCTTTCGCCACACCGACGCTCTCTCCCGCACATGGCGTTAGCCCTGCAAATGGAGGAAAATCCCCACTCAGCAATGGCA GCAACCTTCCCCAGAGAAGGGTAGGGGTGAAAAAAGCTTTGACTGATTTTCTCAGCATTGATACAAATGGGAAGAACTGT GGTAGTTCCACTGAGGAACCAGTTTCAGAATCTGCAATTCTTGATGAACTGTCAGCATTTGGAACAGATGTGGACTCCAG CACAGAAGATGCTGTTAGCTCAAGTATCATGGACCAGGCATGA
Protein sequence (LotjaGi1g1v0577200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSTFTKQHDHLKHCAPAPLVKIRKSPNQNNNNPFSILVFWVSKSLRSLCFRVHFSQQGLCFRTIQYPGMVIETTTTTTT TTVLYASSSMEGLSLAEKKNEVVVQENGTLAADLIEEKGRESSFSSEFLSSETTTAHEEQSRSSTEDSSSSPSSMGWPVQ EIAASSDCEEKHLENEKFEKQASALSEIEMMKERFAKLLLGEDMSGCGNGVPTALAISNAITNLCATIFGQLWRLEPLRA EKKSMWRREMEWLLSVSDHIVELTPNWQTFPDGSKLEVMTCRPRSDLYVNLPALRKLDNMLLEILDSFVNTEFWYVDQGV IAPDADGPSSFRQAQRQEEKWWLPVPRVPPCGLHENSRKQLQHKRDCTNQILKAAMAINSITLAEMDIPESYLESLPKNA RVSLGDVIHRYITSEHFTPECLLACLDLSSEHQALEIANRAEASMYIWHKRTNSKPANVSARTSSRSSWEMVKDLMVDAD KRDLFAERAESLLHSLKQRFPGLPQTSLDMSKIQYNKDVGKAILESYSRVLESLAFNLVARIDDVLYVDDLTKHSDQIPP LSKVGVITHKNISVPYSVPVPSTPYRSAFATPTLSPAHGVSPANGGKSPLSNGSNLPQRRVGVKKALTDFLSIDTNGKNC GSSTEEPVSESAILDELSAFGTDVDSSTEDAVSSSIMDQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 107 | 614 | 508 | 2.8E-292 | ||
| PANTHER | 107 | 614 | 508 | 2.8E-292 | – | |
| MobiDBLite | 123 | 157 | 35 | - | – | |
| MobiDBLite | 124 | 138 | 15 | - | – | |
| Gene3D | 178 | 417 | 240 | 8.0E-113 | – | |
| ProSiteProfiles | 178 | 559 | 382 | 121.746 | ||
| Pfam | 186 | 553 | 368 | 6.9E-186 | ||
| Gene3D | 448 | 558 | 111 | 5.3E-20 | – | |
| MobiDBLite | 596 | 618 | 23 | - | – | |
| MobiDBLite | 661 | 680 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0577200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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