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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0580600 |
| Transcript ID | LotjaGi1g1v0580600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT5G02320.1 myb domain protein 3r-5; Swiss-Prot: sp|Q6R032|MB3R5_ARATH Transcription factor MYB3R-5; TrEMBL-Plants: tr|A0A0B2Q2F2|A0A0B2Q2F2_GLYSO Myb-related protein 3R-1; Found in the gene: LotjaGi1g1v0580600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112007468..112015104) extracted from Lotus japonicus Gifu genome v1.2.
TAACGGCAACGTCGGTGAGTGTATTCGGTATATAATAAATAAATAAATAAAATATTCGGATTATTTCTATTTTTATTTTA AATTAAGTTTCAATTTTCCATCGATTCAACGTTCGAGGATTTTTCGAAACCTTAGCTTCCAGAGAGAGAGAGAGATAGAG AAGAAAGCAATCTTGGGCTCTCTTCTTCTATGAGCTTCACTTCGATTCCCGCCACTTCGCTGCAACCACAGGTACTTCTT CTTCACTTCAGATGATTATTACGATTTTCTTTCTTGTTGTCGATTGATTTTGTGTATGTTTTCTGTTTTTTTTTATCGAT TCTTGGCTGTTTATAGTTTCCATCAAACGATTTCGATAGGGTTTTAGTTTAAATGTTTTATGTCAGTTTTTTCTTCTTGT TTTTGGTGGAGGGGTGTTGATTGTTGAAGGTTTTGATCTCATAGTGGATTCTAAGATCTGGGTTCTATTTATATATGTGT TTCCCTGCGCAAGTTTAGAAATTTCTCAATTTTAGCTGGGTTTTTAGGGTTTTTCATGGTTGCAATGTTCTGGGTTCTCG AGGATTTTGTACATATATAGGAGAATAGGGGGGATTAGATAGTAGATAATAATCAACCATCCTATTACTCTGTCAATTCA ATAGCATTAATGGCCTATATACACTCCCTTTGTCCACCTGTACTGTAGTGTGTAGTAGGTTGTTAATGGCGGATACTGTA GCGTTGTGGAAGCCCAAAAAAACGCTATTTCGAGCGCTATAGCGGAAAATAGTGGAGTAGCGGTGAACCCCCAGGGCGCT ACGCTATAGCGCGCTATTAACAAGCCTAGACTTGTACCAGAACCCTACTCTCTAGAACAGAACAGAATCGGTTGCAACGA AACAGTACTTTCCGCAATTGCTTCTTTACAAAAATACTTTATCTTACAGACTTATTGTTTTTCTTGATTATATAAGATAT ATGCAATGGTTTGTTGATTGAAATTTATGCTTTTTGAAGGATATGGCTGGGGTGAAATCAGAGGAGTGTTGTTTGGAGAA TAAGCAAACTACTGTCGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCACTTCGCAAATCTCCAGGGATATGTA GCCCGGCGTCGACATCAACCTCACATCGGTAATATCCGTTAAGTTCTTTACTTTTTCATTGCAGTATTGGTCATGATTCA TGAATCATGATCAATCATCCTGTTGAACCTTAGGGAAGCTTGCTTTACTGCATGTTTTATGCCTATCTGGCATTGGCTTA ATTTCCCATTCTTCAATAGTAGCTAACTTCCATTATACTGGTGGAAAATTTATCTATTTCGACAAATCTTCAGTGTGATG TTCATACATTGATTTTTCTCATGTGAATAATTTTATGTACAGGAGGACCACTGGCCCTATAAGACGTGCTAAAGGTGGTT GGACTGCAGAGGAGGTTAGTCTTTACTCATTGGAGACAGATTTCTTTTTTTGGCTAGATATGCTCTTGCTTGTTAGCATA GCTGATGCCTAATTGAATAGTGAATTCATCTCATTTGTTTTAACATCTATCTAAAGTGTAGTCCAACATATGTTATGCTT GTCCTTGTCAATTATTGCTGCATGTATATAAGTTAATAATTTCTCTTAATGTTTTTTGCACATGCTGCAGGATGAGACAT TAAGGAATGCTGTTGCAGCTTTTAAAGGAAAGAGTTGGAAGAAGATAGGTATTTATATGTACTTATATATATATATATTT ATATATTCACCCTTGTTAGTGTTTCTGACATCACTTGTTATTGCTGCAATGATTTTGAATGGAGATATCTTTTGCAATGG ATCCTTGATTTTATTAAAAAATAAATATTTGGACTTACCTAAGATAGTTTAACTGCATTTTTAAGATTACAGGTTTCTAA ATTAATTTAACTAAAATCTTGTTTTTGCAAAGTTCTTTGTGATAATTGAAAAGACATACCGGGAGGGAGTTTGACTACCC AACACAGGGTCTTGGTTATCAATGTATGAGACTATAAGCCAAGAAAAGGGTAAATAGAATTAGAAACAATTAGGACATGA TTTCAAGTATCATATGGTGGCAATTGAAGGTGAAATACAAACGAATATTTCAAAGAAGGGTGTTGGGAAAAACATAGAAA TGCTAGTGAAATGTGGAATGAGCTAACTAAAGGGATTAGAAAGGTAGCAAAAGAGAAACTCCGTAAATCAATAAGTTTTT TACCAAAGGGTAAAAATTCATGATGGTCGGACATGTGCATACAATATAATGTTAAGTTTAAGAGAGAACTATACCGTGTG ATCGTGATGTTAAATGCTGAAAATTGAAAAAAGAAAAATTGTTGTGAAGAAAGTTATTAGGATGGCAGTGAGTTAAGCAA GACCTAGATGATTTAATTGGTTATACCAATTCTTATGCACCAAAGTTGGGGACAAAATGTATTTGCAAGCATTGTTAAAG GCGGAGGAAGAAAGACGAGACTTGAACAAAGTGAGATGTATCAAGGATGATGGGGGTGCAGTGAAACAAGATATCAAGGA AGGGTGGAAGAGCTAATGTCACGAGTTACTAAATTAAGGGCATGAGATTTAGCAATTAAAAATAGGTAGGATTGGGTCAC GACTTGTGTGATAAGACAATGTAAGGCCAGAAATGACTTTTTTATTTATTTTTAATTTTATAAGTATATGACTGTACCTA CTCACCAAGGATCAATTTTGAGCCCTTATCTTTATAACTCAGTCTTGGATGTGGTTATTGAACATATCCAATCTAATAGC TGGTGCCACGATGCATACTTTTGGATGATGATGTAGCCCTAGCCGGAAAGTCAGAGAAGAAATAAATAAGAAGCTAGAGA TATGTAGACAAGCTTTGAAAAACACGTGACTTTCATTTAAGTAGAAGTAAAATAGAGTATGTGAAATTTAAGTTTAGCAT GGGACACTCTAATTTTTGCTTATAAATGAAAATTAGAGATCATACCTTAACACTAGTCATATTGTTTAAGTACCTCGATT CCAGCTTACAAAATGATGGGGAAGTAAAAAAAGTTCTAAATCGCGAAGTTCCTCAAAATTGTTTTCTACGTGCAGAGCAG TTCCATTCATCATATGTTTTGAAATAGAAACTGCATTGGCATTTTAATCTCGAAGGACATGAAAACTATATGTAATGGGA CTTCTATGCTGTGAAAACTCTCTAGTTAGTGTAGATGGTTTTCATGCTACTAAAAGGGAGGTTGAGAAGTAATCTGGATT GAAGACAAATATAATTTGAAAGACATAAGCTCAAGGATAGCTTTTAGCTAGTTTTTCACTTCTTTGGAATGCACATAAGT TGGAAGAAAGCCACAAAAATTAAAACTTTGAAACCTCTATTTGCGTGTAATGTTTGTGTGTAATTTGTTCTTCAACAGAG CATTGTAATGTCTGTGAATAAACGAATTTGTTCATGTTGCTCAATATGATGTGCTTAATGAAAGCATTATGCTCATTTTC CTGACACCAATTTATAATGTGGAATGCAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAA AAGTTCTTAATCCAGAGCTTGTTAAAGGACCATGGACACAGGAGGTTGAAACCTAGTCCTTTTCTTCTTTTTCAATTTTC ATACAATTTTATTCAAGCGTTAACTTCTCTTACTTCAATTATAGGAAGACGATAAAATTATTGATCTGGTGTCAAAATAT GGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAGCGGTAGGTTAACTG AACTTCATGTGGTAGTTTTTTACATTTTGTATCTTCATTTAAATCATTTTTTATTGATAAATGATGTTATTCTCCATATC ATATGCACAAATTTTATATCTGTTTCTTACATATCAGCTTCAATTTTTTAAGATCCTCATTCTGTCTGGATGTTCCTAAG GGATGATTTGATCCTATATCTTGCTTTGCGCACGGACTGCTCAAATTTACTGGTTTTTCCTTTTCAAATGTTTTCAGGTG GCACAATCATCTTAACCCCGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTGGCCCTGATGAATGCTCATCAGA TATGGGGGAATAAATGGGCTGACATAGCTAGGTTTCTTCCTGGAAGGTTCGCTTTCTTATTAATTCTTTATTTGTTGTAA AGGAAATTAAGGTACTAGCAAAATCATGGAATAGAATCTTTGTTATTTATGCTAATTAAGATGTATAATCCTTGGTAGTA TCTGCAACAGACTTTTGACATGATTTCATTTTCTTTCGGTGGTGGTGGTGTTGCTTGGACATATTTCTCTTGCTCTCAAT AATAAATCTTAGGAGGATATATTGTAGTTGCATTTTTTAATATGAAAGTAATTCATTAAGATGATCAGAAAGAAATTAGA GTTGGTAGTAAGAAATCTTGTTTAACATAAGAATGAAACACAAAATAAGAAAGTAAAGAGCAAAAAAATATGTTAGGGAA CTTCTATTTAAAGGCCACGTGCTTTACTCCTAATGGAGGCCAAACGTCTCTCCTCAACACTTGTTTCTCAAATGATAGTT CACTCAACCCTCCTTAAGCCCCAGTCCCTGCCACACAAAAGAAAGAAGCAAGAAAAGCTCTTTTCTAATAACATAGAAAG GGCCTTTTTTCGTACATTTTTCATCAAAAAGAGAAATGCTGTAGTTAGCCCAAAGCAGGTAGCCACTTCACTGGTGTATG AATAATATTGGTCTTCTTACTTTAAAAATTTGAAATCTATATAGTCTTGCTTTTATCACTTGTCAGTTTTCCCTTTGCAA GTTTGTTCAGTGATGCATTTCTTATGGTTCCTGTTCTTAGAATTTACGGACAGAAAAAGTTATGATGATTTGTCCACCTT CTTCATTATGGAGTGAACTAATCTGCTCAATGCTGTTTAAAACATATTTAGTGGAAGTACCATGCTTCTATAATTCAATT AAGTTCATTTTATAGTAGTGTGTGTTATCAAATATCTGCCACGGCGGGCATCTCACGGATGGTTTTTGGCTCTCGGCCAC GGATGATATCCAGCTATGATCTGCCATAATCCACCATCATTATTTGTCAAAACTCCGCCATAGTCCGTCATCCGCCATTG ACAACACTGTTTTAAAGATTGAATCCCTGCCAAAAAGGATAAAAAGATACTACTGATTATTAAAGTTACATAAGAACTTA GATGGATGGCACAATAAGTTGATTATATGACCCTCTTTACAAAAGTTTTAAGATATATTTGAAATGGCATGCCACTTGTA TTTGAAACAAATATTAATATATCATTTGTTTACCTGAATTTTTGTTCTGCAGGACTGATAATGCAATAAAAAACCACTGG AATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAACTACTGGAAGACTTCCACCAATTCCAAAGAACAGCTCGCAAGT TGCTGCCAAAGATGCAATTAGACATTCTGCTACTAAAACATTGCACATGCAAGAACAGTTTGCAAGTTGCTCAAATAAAG AATTAAATGCAGCTGTTGAAACATCGTCTGAAACTACAGCCATTAGTAAGATAGATGACAGTAGCAAGTATCAGTTTGAG TCCTCAGGAACAATTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAACCTGCTGATTCTGACGGTATAGAATG CAAGCCTGGACCATCCAACATGGATCATAGCTATAGCCACTCAGAACAAGTACCAACTGCTAATTTTGGAATTACACATG AGCAGAAGTTTGAGAATTCTGGACTAAATGGAAACTCAACAAGTGAGCATTGTTTAAACAATGGCAAGATGAGCAGTAGC AGGTTAATCAGGACACCTTCTTCAAAAGAAAGTCTAACCTATGGTTCTCTATGTTATGAGCCACCCCAATTAGATGGTTC GGTTCCTTTAGATTCTCTTTATTTAAATATTGTTTGCCAGCAGAATGAGTATTGTTCCAATCCAATGTTGTCATCACCTA TTGGTTTCTTCACTCCACCTCGGGTGAAGGCTAGTGAATTATGCACAGAGACACCTGAATCAATATTGAAAAAAGCTGCT AATACTTTTCCAAATACTCCTTCCATATTGAGGAGAAGAACTAGAGTCCAAACGCACACTACTCCAAGTAAAGTTTTGAA AGTAGACAGTGATTCACATACTTCTAATGAACCCGATAAAACCAAGAATAATTCTGGTTCGGAAGTTGAGACGTTCTCTG AGAGTCCAGAAAGCCATGGCAATGGGAGCAACATTCCCAATAATAAGGCATTCAATGCATCTCCGCCATATCGGTTAAGA TCGAAGAGAACAGCAGTTGTGAAGTCTGTTGAGAAACAACTTGAGTTTGTGTTTGACAAAGAGATGAATGATGAGAATAT GAATACAATGGAAAAGCCTGTGAAGAGGAGCAATGTGAGGACTGAAGATTGTCTGCATGAAACAAAATTGCTAGTAACAT AATGAACAAATTGTAAGTCCTTGCTAATAATTTTCTTTAAATGTATAGCATTATGTTTCTCCCTATGCTTTAAAGCATCA GGGAAATTGATGTGTACTTAGTGAGGAAGCCACCTTTTTGCCTAGGAGTGAAGTTTGTCCAGAATAACAAACTCAGTCAT AGAGAAATTCATGATGCTAGTTTCTTTTTCTTCAATAAATGTCTAATGCATTTTCCCTGTTAGGGGAAGGATATTATTTT CCCTGTGGAATTCTGGAACAAATGGGATAGTAATCTTAGTTGTCTTTCTTATCCAATCTGTAAAGAACTTATCTATTTTT CTCCAAATTAAAGAACAACTTTGATGAGCTCAAATGTTATTTAATATGATTATCTTATTCTGTCTACGAGCTATTATCTG TGTAGTGCATTATAGGTTGTATCGCATCACTTCTTTTAACCTTAGGGTTATGGCCTTATTTCAATGTATCTTTTCCATGA AACACCAAATGCGCAGTAGAAATGGATTTGTGTATCTTTTGGCTGGAGATAATGTATTCTTATTGCTTCAATCTGACTTG GCTTATATTAGGGGTACCATTATAACTGTTGTTCTGAATTGATGCAGGGACTATTGCAAGACTCATTCTTGAAGCTGGGT GATTGTTTCATTAAATTGTTTGACAGAAGTTAGCTCATAGTGTAGAATAAGAATTGATAAATTCCATTTACTTGTGGATA TCTATATAGCTAGCTGTATTTTACCAGACTTGTACAGTTTAGGAAATGTTAATTTTCTAAAGTTTCATCAGTGTCGAAGA TTCCTTTAGTACTTACTCTCAATAATTTACAGCCTGACGTACAAATGAGTGTAACCATTTTATGCACACTTTACAATTGA AATAATATTTGACTATAACCCAAGGGTGCTACAAGTTCATTATGGAAATAGAGTATGCTCTTCTAGAAATTATGATCAAA CTCAAGGATAATTAATACATGATGAACATCTCTACTGGGCTAGAAGATTCTATTTTCTGCTTTGCTTGTATATGAATAAC TTATTTTTTTATTGTTTTCGTTGTTTTTTAGAGGGCC
CDS sequence (LotjaGi1g1v0580600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCACTTCGATTCCCGCCACTTCGCTGCAACCACAGGATATGGCTGGGGTGAAATCAGAGGAGTGTTGTTTGGA GAATAAGCAAACTACTGTCGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCACTTCGCAAATCTCCAGGGATAT GTAGCCCGGCGTCGACATCAACCTCACATCGGAGGACCACTGGCCCTATAAGACGTGCTAAAGGTGGTTGGACTGCAGAG GAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAAAGGAAAGAGTTGGAAGAAGATAGCTGAGTTTTTTCCTGATAG ATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAGCTTGTTAAAGGACCATGGACACAGGAGGAAG ACGATAAAATTATTGATCTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGAATA GGGAAACAGTGTCGAGAGCGGTGGCACAATCATCTTAACCCCGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATT GGCCCTGATGAATGCTCATCAGATATGGGGGAATAAATGGGCTGACATAGCTAGGTTTCTTCCTGGAAGGACTGATAATG CAATAAAAAACCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAACTACTGGAAGACTTCCACCAATTCCA AAGAACAGCTCGCAAGTTGCTGCCAAAGATGCAATTAGACATTCTGCTACTAAAACATTGCACATGCAAGAACAGTTTGC AAGTTGCTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCGTCTGAAACTACAGCCATTAGTAAGATAGATGACAGTA GCAAGTATCAGTTTGAGTCCTCAGGAACAATTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAACCTGCTGAT TCTGACGGTATAGAATGCAAGCCTGGACCATCCAACATGGATCATAGCTATAGCCACTCAGAACAAGTACCAACTGCTAA TTTTGGAATTACACATGAGCAGAAGTTTGAGAATTCTGGACTAAATGGAAACTCAACAAGTGAGCATTGTTTAAACAATG GCAAGATGAGCAGTAGCAGGTTAATCAGGACACCTTCTTCAAAAGAAAGTCTAACCTATGGTTCTCTATGTTATGAGCCA CCCCAATTAGATGGTTCGGTTCCTTTAGATTCTCTTTATTTAAATATTGTTTGCCAGCAGAATGAGTATTGTTCCAATCC AATGTTGTCATCACCTATTGGTTTCTTCACTCCACCTCGGGTGAAGGCTAGTGAATTATGCACAGAGACACCTGAATCAA TATTGAAAAAAGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGAAGAACTAGAGTCCAAACGCACACTACT CCAAGTAAAGTTTTGAAAGTAGACAGTGATTCACATACTTCTAATGAACCCGATAAAACCAAGAATAATTCTGGTTCGGA AGTTGAGACGTTCTCTGAGAGTCCAGAAAGCCATGGCAATGGGAGCAACATTCCCAATAATAAGGCATTCAATGCATCTC CGCCATATCGGTTAAGATCGAAGAGAACAGCAGTTGTGAAGTCTGTTGAGAAACAACTTGAGTTTGTGTTTGACAAAGAG ATGAATGATGAGAATATGAATACAATGGAAAAGCCTGTGAAGAGGAGCAATGTGAGGACTGAAGATTGTCTGCATGAAAC AAAATTGCTAGTAACATAA
Protein sequence (LotjaGi1g1v0580600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFTSIPATSLQPQDMAGVKSEECCLENKQTTVASCSSVSEGSGSALRKSPGICSPASTSTSHRRTTGPIRRAKGGWTAE EDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIIDLVSKYGPTKWSLIAKSLPGRI GKQCRERWHNHLNPDIKKDAWTLEEELALMNAHQIWGNKWADIARFLPGRTDNAIKNHWNSSLKKKLDFYLTTGRLPPIP KNSSQVAAKDAIRHSATKTLHMQEQFASCSNKELNAAVETSSETTAISKIDDSSKYQFESSGTIREVGDSSSVPANEPAD SDGIECKPGPSNMDHSYSHSEQVPTANFGITHEQKFENSGLNGNSTSEHCLNNGKMSSSRLIRTPSSKESLTYGSLCYEP PQLDGSVPLDSLYLNIVCQQNEYCSNPMLSSPIGFFTPPRVKASELCTETPESILKKAANTFPNTPSILRRRTRVQTHTT PSKVLKVDSDSHTSNEPDKTKNNSGSEVETFSESPESHGNGSNIPNNKAFNASPPYRLRSKRTAVVKSVEKQLEFVFDKE MNDENMNTMEKPVKRSNVRTEDCLHETKLLVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 38 | 70 | 33 | - | – | |
| PANTHER | 46 | 515 | 470 | 9.3E-135 | – | |
| PANTHER | 46 | 515 | 470 | 9.3E-135 | ||
| MobiDBLite | 52 | 66 | 15 | - | – | |
| ProSiteProfiles | 69 | 120 | 52 | 15.363 | ||
| Gene3D | 73 | 123 | 51 | 1.0E-18 | – | |
| SMART | 73 | 122 | 50 | 2.1E-14 | ||
| Pfam | 74 | 120 | 47 | 3.4E-14 | ||
| SUPERFAMILY | 75 | 130 | 56 | 8.61E-15 | ||
| CDD | 77 | 120 | 44 | 2.75265E-13 | ||
| ProSiteProfiles | 121 | 176 | 56 | 32.969 | ||
| SUPERFAMILY | 123 | 219 | 97 | 8.07E-32 | ||
| Gene3D | 124 | 178 | 55 | 1.1E-27 | – | |
| SMART | 125 | 174 | 50 | 2.2E-18 | ||
| CDD | 128 | 172 | 45 | 6.94136E-17 | ||
| Pfam | 129 | 187 | 59 | 3.5E-18 | – | |
| SMART | 177 | 225 | 49 | 5.8E-15 | ||
| ProSiteProfiles | 177 | 227 | 51 | 21.4 | ||
| Gene3D | 179 | 245 | 67 | 9.8E-19 | – | |
| CDD | 180 | 223 | 44 | 1.1503E-11 | ||
| MobiDBLite | 298 | 341 | 44 | - | – | |
| MobiDBLite | 298 | 317 | 20 | - | – | |
| MobiDBLite | 458 | 535 | 78 | - | – | |
| MobiDBLite | 458 | 488 | 31 | - | – | |
| MobiDBLite | 498 | 530 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0580600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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