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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0580800 |
| Transcript ID | LotjaGi1g1v0580800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G24130.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29; TrEMBL-Plants: tr|K7K766|K7K766_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0580800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112024764..112033485) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAAATGTGTGAAGATCACAAACTTCTTGGATCAATTTTTCCTCTTTGATCCATCATGTATTTCCCTTGGTGTCACTT CACTTGCTTTTTTCTTCTTTTGGGTTTTGGAGTAGACCTAGCAAATTCTCAGACTTGTAGAAGAGTTGGAGGAAAGATCC TTCCTTGCTGGACAATAGTTGTGGATCCATCAGGGCATGGAAACTTCACTACCATACAATCTGCTATTGGTTCAGTCCCT TCCAACAATAGGCATTGGGTTTCCATCAATGTGAAGGCAGGTATCTACAGGTAAAATTATGAATACCAACCTCCATTAAT CTTATAGTACATATAAAATCAAGAACTATATATTACATACATATCAAATAAGTGTGTTCATGTTAGTGTGTTTTTTTAAC AAGCATATGACCAAACCCAAAAATCTCTGTCTTCTGCTTGCTCTGCATCTTAATTTTGTTATTTGAGTTTTCAGTATTGC GTTAACAAGTTTTAATTTTATATAACATAGGGGTATGATGAAGACATTTTTTTGTGTATATTGGACGGAGAGTGTGATAA AACAGTGAGGTTCAAATATTTATAAGGGATTGCTGTTTTCATACCCATTTTTGCTATTTACACACCTTGAACTCATATTT TCAGTTTTAATTTCAAAAGAAAAGAATGTATAAATATAAAAAGAGGAGTGCAAAAATTAATTTCCATATTTTATGCCTCA CAAATCAAATTGTTAATAAATAAAAGTTGTTACTAGTAATAAATTTGTACTCCCTCAGTTCCTATAGATAAGTTCATTTT ACCTAATTCTATTATATAAAAAAAATATTTACAAGCAATAATTTATAAAAGAATTTATTCACTTTTCTAGATACCTTATT TAATTTCTCTCTTGAAGTTATTATTTCAAAATCTCATAATCTATTTCATATCAAATATGAGATAGTTTTGGGAAAAAAAA TATTTAATGCTCCATTGATACGGTAAAAGGACTTATGTTTATGAACAATTTTTTTATATATAAATGGACTTATATTGAAA CAGAAGGATTATATGATTTCTAATGTTTTCAGGGAAAAGTTGGTAATTCGTGATGACCAGCCTTACATTTTACTACAAGG AGAGGGAAAGACGAAAACCCTTGTTGAGTGGGGTGACCATGATACAACATCCCAGAGCCCTACATTCTCCACCATGGCAG AATATATTGTCGTCAAGTATATCAGTTTTATTGTGAGTGACATTATCTCTTGCTATTTCATATTATTAATTACCTTTTAG TGTTAATTAGTTGATGATGAAATGATAAGGAAACATTAGTAAATGAATTGATAATGAATTAGAGTTTAATGGATATGCAC TGACAGTGTAAAATAGTTTTACACAGACATCCAATTGAATTCCGCCAAATCAGAAAATATATTATTCTTTTAATTAAAAT TAAAGTCAAATGTAATTATCTCTCCTATGTGACATGCTTTGATTGGATGACTGTGTAAAACTATTTTACACTGTCAGTGC ATATCCATTAAACTCAATGAATTATGTTTAAAAATTGAAAATTCATTTAACAATATTTTATGTGTTAAATTTTTTTAGTT ATTAAATAAAAATAAAATATTGAAATTAATTTAAAATAATACTACCTCTGTTCTTATTTAATTGTCCGGAGAAATAGTAG AAGTATTGTTTATTTTCCAATTCTACCCTTTAGAATGTAATTTATCTTTCCTCATTTATTGTTCCCACAAGGGCATTACT TGGAAAAACATCATTTAATGCTCTCTTGAAATGTTAATTTGTTATGCGGGGGAAGTCGGTCTTTGATGTGGGATTGTGGT AGAAGACTCATACCGATGGGCTTATAGATATTGGACCCTAATTCCAGCTGATCCCTACTGAGTAGAAGCCAGAGAAGAAA GAGCCATAGATGTTGGGGTATGAGGCTTAGCATCAGATAAAACCTGAGGTTTCTGTTTGTGGATATGCCGTTGTCTCCAA TTCGTCATGGTAAACCGTCACACCTTTTCGTGGAGGCACAACAACTGTTGTTTTCTCAAGCACAGTCCCACTTGATGCTG CAATGTGCTCAGATTTGAATTGTATAAACTGCAATTTGAACACCTCGCAAAATTTCTCCCATGAGTCAAGCTGGTGGCGC CATAAATTGAACCATGTTAAGGCTTGTCCCTCTAGATAAAGGGCAATGAACTGAAACCGAAGTTCCAGTGGCCATGGATG CTGCAGGAAAAACACTTCAGTGTTCAATAGCCAAAAAGTAGGATCGGATCCAGAGAACTTGATAAGTTTCAATGGTGGAG ATGAGAGTGCAGAATGTTGTGTCTGGGATGGATAATTGTGATAGTGGGCTGGGTTGTGGTGGTAGATAGGTGGAGGTTGT GGTGGGATGGAGTGAAGGTGGCCATTCAGAAACGATACCTGATCAATGAGCCCTGAGATGGCAGAAGTTCGAGTATCAAA GTCGACCTGTAACTTGGTGGCCATGGAAGCAAGTTTAGCGTCTATGGCATCAAGCACAGTGTGTATAACCGGTGAATCTC TAACAGGAGGCATGGAGATCATGAATGAAAGCACCAAATTGGTAGAGAGAAACTCTACCAAGTAAAATCAAAGGAAGAAA ATCAAAAGAAAACTAAGAAAATAAGATAAAATAAAACTTTGTCAATTTTCTTGTTATTAATTTCAACAGCAAAAGATACA ATTTAAATTGTAGTGTTTATAGCTAAAGCTTAATTTTCTTGATGACCAACAAGTGACATCATCTTAATAGAGGGAATATA CTAGAAGCTTGACACCTTATAAGAGTATGGAAACTAAAGCTAGAATAATAAAACTATAAACATGCAATAAAAAGATAAAC TTCATAGGGCCCAATGTCCATAAGGTCCAATAACTATAAGCCCATCGGTATGAGTCTTCTACCAGATTGATGTTCATCAT GGGGAGGCGTTTCAGATTAGAGGGTTATTTTACACTGATTCTGGGTTTGTTGTGGTAGAGGTGGAGCGCCCTTTCTACGA TGGCATTGGAATGATCTGCTCTCTATGGTGTCATGGCATGGAGGGAGTTCTAGCATTGTTTCGTCGAAGACGATAGCGTT TTAGTTTCTTCGTTTGATGACGATTATTTCTTGATCGTAACGATCTGCATTTCTAAGTTCTTTTTGTTTTTGGTTTTTTC ATGGATAAGTTCAATTTCATCCTAGCATACGTTGCTCTAAGGAAAAATATACTCATGAATTTTCTCTTCTAGTTTTTCCT ATTAGGAAAAATTATGAGTCAACAACAATTTCACCCGCACCATGTGAGAAATAATAATAATAATAATAATAATAATAATA ATAATAAATCCAAGAGAGAATTTTGAAAGATATGATAATTGATGTGATATAAAAATAAGAGAAAGGGAAAAACTTATGTG AAAGTGAGATGGAAAAGAGAGAGGTGAATATATATATATATATATATATATATATATATATTAAAGTTGATCCTTTTAGT TCATTCATAGCTTTGTCTCGAATTTATATCTTGTAGTGATATCTAAGTTTGTGCAATAAGATGTGTTGGTCTTTCTCAAC AACAAAAAATAAAATATCATTGTTGTGACATAATTTATATTTTTGATATGCGTATGGAACAGAATTCATACAATAACAAC CCCCCACAACCTGCAGTAGCTGCCTTGGTAAGCGGTGACAAGTCTTACTTCCTTAGTGTTGGTTTCTTTGGTTTTCAAGA TACTTTGTGGGATAATTATGGACATCATTACTACAAGTCTTGTACCATCCAAGGTGCTGTTGATTTTATCTTTGGTGCAG GACAATCATTATACGAGGTAATAATGTTCCATTGTTTCTTTTTCTCTTTTTTGCATCACATGGTAGAGAAGACAACTTAT AGTATACACACGCACAAACACACGCGCGCACATACACATCTATATATGATCCATTTTTTTTTTATAAGCCATAGTAATAT TAATTAAAAAGGCACAAGGGGTGCCACCCATTACAAGGGAAAAAACTAAGCAAAAAGGAGAAAAAACAGAGGAAGAAAGA AACAGTACAGGATCATAGCAAAAACAATATAAGGGATGCCCATGACTATGCCAGCAAATCACCGAGTAAAGGAGAATTGC AACCTACAAATAGATAAGGAAAAGTAAGGCAATGTCCAGATAAACAATTAGTAATATCCTTCTAATGCACCGCTTGGAGA CATAGAATGGGTTGTGAGATCCATTCATATAGAGAACAATGGAATCTTGTAGCCCTCCCAGAAAGCCAATGCCATACACG GATTTGTGCCCTGTCAAAGAGTTCATCTTGTTGCAGCAGCTCTCCCCCATTAAAAATTATCCCGTTCCTATGCATCCACA ATGACCAATTCATCGCAAACCAAATAATTCTGAAAGCTGCATTTTGTTTTGATGATAATCCTGGCCAGATAAATTGCAGT AGGAGATCTCTGCAATTTCCCGGAGTCGCTAATAGACCTCCAAACCATCTATAACATCTACTCCACAAACTGAGAGTAAA AGGACATCTCACAAATAGGTGGTTTGCTGTTTCAGTTTCCTGCATACAGAAAATACAATTCAAATCAGCATCTGCAGGTA GGGCTCTTCGCTGCAGCAGGTTTGATTTGGTTGGCAATCTGTCCAATTGTTGGGAAACAACAGAGCTGAAGAAAAAATAA AACACAATCACAACACAAGAAAATTACGTGGAAACTCCAAAACTGGAGAAAAAACCACGACCGTTGTCTAAACCGACAAC CAGAGAAATATCACTATGTGAAAATTGTTACAACACATAGACTTCTCTCACTCTCACTCTCACTCTCACCCCAATGCCCC AGTACAACCACACTCTCACAAAGCAAATATTAAACTAAGTCAGATATAAGCTTAAAGTGCTACTGACTGGTGCATCTAAA AACAAAGAACCTAGGTCCAATATATAGCCTTGGTCTCCCCCTTGCTTCACAACACTAAGCGATGTGGGACTTCTCTAATA GCTAATTTTTAACCTCCTTCTTTATTTTAGAAACTTGGGCAATGTGGGACTTGACAATCAACCCCAACAATCTCCACCTT GATTGTAAGAGTTACACATCTTCCGCTTGCATTGTCTATACCGACAATCATACTCCACCATAAAAGAGTACACTTTACTT GGAAACAAACCATCCCAAGAAATTTCTTCACTTGAAACTAAACCATTCCAATAATTTCCACATGTCGAAACCTTGCTGAA ATTTTATGGTGCAACTCCCATGTTGGCTTCCAGGAAGTTCTTCAGCCATCGACATCTTTCACCACACACCTTGCATCAAT GCCAACCAATGCCCGTGTGTTGTTTCTGAATCCGCTAGCAATAACTTGTCCTTTTCCATGGTATAGCGGAAATACCATAA GGACAAACTTTATCTTCTAGATGAGATCATTACCATCATCTCCCAAAACAAGGGAGACAGTGCTAGCACTTACCTCAGAG ACTTTTTCAGATACTGCTCCACCTGGACAATTTCTCTTCACATGCCCAGACTCTCCTCACTTCCAGCACGCCAGATTCTT TGCAAGGATCTTCTTCCCATTAGCCCCACCTCCAGTTAGCAATATTGAGCTTGTTGAAGTGCTTTCATCATTTTTCATTC TCCTTTCTTCCGAAATAATTTTAGTTGCAACTTCTTCAAAACTCAAACTTTCCTTCCCATACATCAAAACAGGTTTCAGA TGAACATAGGAAGATGGAAGGGACAAAATGAGCCTTAACGCTTTATCTTCATCATCAATCTCTACTTTGATAGATTCCAG CTCGGAGATAATATTATTCAAAGTACTCAAATGATCAGATATTTTCGTACCTTCATCCATGCGTAGATTGTGGAATTGCT CTTTCAGCAACAACCGATTTGAGATGCCCTTTGCCTGATATAACCCTTCAAGCTTCTCCCAGAGCTCCTTGGCTGATGAC AAATTCTGCACATTTGCGAGAACATTCTTTTGCAAACACAGACGGATTGCACTTGCAGCCCTCAAATCTAGTTCCTCCCA CTTGTCGGCCTCCATGTTAGAAGTGTTTCCTTTCAGCGCCTTGTGTAATCCTGATTGTATCAGCACATCCTTGACTTGTA CTTTCCACAAGCCAAAGTTGATTCTTCCATCAAACTTCTCTATGTCAAACTTTATAGCACTCGAGTAAAACATAGCAGCT GCAAACTTCTTCTTCACCACCTCCACAATATCACACTTCTTTTCTGGTGTGGAAGATCAGATAATTCTACGACCACAGAG CATACTAAGAATTGTGATATCTCATCGAACCGAAGCTCTTGATACCACTGTTGGGAAACAACAGAGCTGAAGAAAAAATA AAACACAATCACAACACAAGAAAATTACGTGGAAACTCCAAAACCGGAGAAAAAACCACGACCGTTGTCTAAACCGACAA CCAGAGAAATATCACTATGTGAAAATTGTTACAACACATAGACTTCTCTCACTCTCACTCTCACTCTCGCCCCAATGCCC CAGTACAACCACACTCTCACAAAGCAAATATTAAACTAAGTCAGATATAAGCTTAAAGTGCTACTGATTGGTGCATCTAA AAACAAAGAACCTAGGTCCAATATATAGCCTTGGTCTCCCCCTTGCTTCACAACACTAAGCGATGTGGGACTTCTCTAAT AGCTAATTTTTAACCTCCTTCTTTATTTTAGAAACTTGGGCAATGTGGGACTTGACAATCAACCCCAACACCAATAACAA TCTCCAGGCAAAAACACACACATTGGATGGGGCTCTAGACCCCCAAATCAGTTTGAAGATCGGATCCACATTCTCGGAGG GGAAACCTTTGATTAAATTGTAAGCTGAATGAACTGTGAAAGTACCAGTTGGTTCCAAGGTCCACAACCAAGAATCAGAT ATCCCATTATGCAATTGCACTTGCAATCCCCCAATAGTCCTTCTAAGTTCTTCCACCATCAGGTCTTCGCGCATGCTAAG AGTCCTTCTCCACTTGAAGTTCCAGTTTAAATGCCCATTAACCCACTGAACCATGTCCATCAAAGTGCAATTCTTCTGAA TTGAGAGGTGAAAAAGTTTGCTAAAGCCAATTTTCAGAAGTCCATTCCCACACCATTCATCTTTCCAAAACCTCACCGTG TTCCCGCACCCAATCTTTCGTCGAAGACCTAAGTCAAACCAACAAACATTCAAGCTAGATTGATAACAAGCTTTGAATAA GTCACACCACCAAGGAGAATCTTTATTCGTGCTATTCAAGCCCCCGATCACCTCTCTATTTCCATAGCAAGCCCAAATAA CCTTGCTACAAAGATCATTGTCCTGCCTCAAGAATTTCCACCTCCATTTTCCCAAAAGTGCCAAGTTGAAAGTATCCCAA TCCTTGACCCCCAAACCACCCTCATCTTTTGGTTTACAGATTGCATCCCACTTCACCCAAGTGATTTTTGAGGTTGAATC ATTCCTTCCCCACATAAAATTTCTCATAATCTTCTTAGCTTCCCTCAAAAATAGCTTTGGGGATTCGGAAGAATGAAAGA AAAAACAGTGGTATTGCGGTCAACACATTGTTTATTAAGCAGACACGACCTCCAAAAGAAAAGGTCTTTTGTTTCCAAGA GGATAGCTTCTTTCTCAAGCGATCCAACACCGGTTGCCAAAGAGTCGCCCTTCTGGGATTTCCACCAATTGGAATGCCAA GATATGTAAGAGGGAGGTTTCCAATTCTACAGTTCAGAATGGTTGCGAACATTCGCAGAACATAACCAGGTACATTGATT CCCACACAACAAGTCTTGAGAAAATTGACTTTTAAACCCGATGTTAATTCAAAACAGCGAAGAATGGATTTCAAAGAGAG GATGTTCTGTAATGATGTATTTTACTTTTGTGGTATTAGAGCTTCATAAATATGGATCATATATAGATGTGTATGTGCGC GCGTGTGTTTGTGCGTGTGCGTGTGTGTATAATATTATTAATATAATTTGTTTTTGCAGGATTGTGACATAAGAGTTATT GCTGGGCGTTTAGGTCCAGGAATTTCTGGTTATATCACAGCACAAGGGAGGACAAGTCTGAGGGAAACAAATGGGTTCAC TTTTAAAAGTTGTTTTATAAATGGAACTGGTACAACTTACTTGGGGAGACCTTGGAAAGAATATGCTAGAGTTATTTTTC ACAACTGCAAAATATTAAACATTATACAACCTCAAGGTTGGGATAATAGACCTTACCCAGTGTAAGATCCCTCTTCTACA TCTATTTCTATACAAACACATCAAATCATGCTCAACATAATTTTTGTTATTTTGTTTGTTTACTTCTTGGGGATTAAGGT TTTGATCAATATGAGAACTTTTACAGGAATCAGCTATCATTCGGAGAGTATAACAACTATGGACCAGGTTCTCACTCGCC CCAGCGTGTTAAATGGATTAATAAATTGAGTTTATCAACAGTTCAGTGGATGTCGAGTTTTGCTTTTATTGACACTGTTG GTTGGCTTAATATCAGCCTAAGGATCGGTTATTAATTCTAGTAACTTCTTGTTCCAATTGTTCCTTTAGTACATTAATTA GCCAAAACTAAATGTGTTTTTGGTGTACTTAACAAAAAAACATGTTTAGATAAGAATAAATATCTTCTATTTTAATCAGA AA
CDS sequence (LotjaGi1g1v0580800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTCCCTTGGTGTCACTTCACTTGCTTTTTTCTTCTTTTGGGTTTTGGAGTAGACCTAGCAAATTCTCAGACTTG TAGAAGAGTTGGAGGAAAGATCCTTCCTTGCTGGACAATAGTTGTGGATCCATCAGGGCATGGAAACTTCACTACCATAC AATCTGCTATTGGTTCAGTCCCTTCCAACAATAGGCATTGGGTTTCCATCAATGTGAAGGCAGGTATCTACAGGGAAAAG TTGGTAATTCGTGATGACCAGCCTTACATTTTACTACAAGGAGAGGGAAAGACGAAAACCCTTGTTGAGTGGGGTGACCA TGATACAACATCCCAGAGCCCTACATTCTCCACCATGGCAGAATATATTGTCGTCAAGTATATCAGTTTTATTAATTCAT ACAATAACAACCCCCCACAACCTGCAGTAGCTGCCTTGGTAAGCGGTGACAAGTCTTACTTCCTTAGTGTTGGTTTCTTT GGTTTTCAAGATACTTTGTGGGATAATTATGGACATCATTACTACAAGTCTTGTACCATCCAAGGTGCTGTTGATTTTAT CTTTGGTGCAGGACAATCATTATACGAGGATTGTGACATAAGAGTTATTGCTGGGCGTTTAGGTCCAGGAATTTCTGGTT ATATCACAGCACAAGGGAGGACAAGTCTGAGGGAAACAAATGGGTTCACTTTTAAAAGTTGTTTTATAAATGGAACTGGT ACAACTTACTTGGGGAGACCTTGGAAAGAATATGCTAGAGTTATTTTTCACAACTGCAAAATATTAAACATTATACAACC TCAAGGTTGGGATAATAGACCTTACCCAGTGAATCAGCTATCATTCGGAGAGTATAACAACTATGGACCAGGTTCTCACT CGCCCCAGCGTGTTAAATGGATTAATAAATTGAGTTTATCAACAGTTCAGTGGATGTCGAGTTTTGCTTTTATTGACACT GTTGGTTGGCTTAATATCAGCCTAAGGATCGGTTATTAA
Protein sequence (LotjaGi1g1v0580800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYFPWCHFTCFFLLLGFGVDLANSQTCRRVGGKILPCWTIVVDPSGHGNFTTIQSAIGSVPSNNRHWVSINVKAGIYREK LVIRDDQPYILLQGEGKTKTLVEWGDHDTTSQSPTFSTMAEYIVVKYISFINSYNNNPPQPAVAALVSGDKSYFLSVGFF GFQDTLWDNYGHHYYKSCTIQGAVDFIFGAGQSLYEDCDIRVIAGRLGPGISGYITAQGRTSLRETNGFTFKSCFINGTG TTYLGRPWKEYARVIFHNCKILNIIQPQGWDNRPYPVNQLSFGEYNNYGPGSHSPQRVKWINKLSLSTVQWMSSFAFIDT VGWLNISLRIGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| PANTHER | 23 | 325 | 303 | 1.3E-123 | – | |
| PANTHER | 23 | 325 | 303 | 1.3E-123 | – | |
| Phobius | 25 | 332 | 308 | - | – | |
| SUPERFAMILY | 36 | 325 | 290 | 2.9E-73 | ||
| Gene3D | 38 | 330 | 293 | 1.6E-92 | ||
| Pfam | 40 | 307 | 268 | 1.0E-63 | ||
| ProSitePatterns | 180 | 189 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0580800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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