Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0584800 |
| Transcript ID | LotjaGi1g1v0584800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein; TAIR: AT3G24760.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q3EB08|FBK69_ARATH F-box/kelch-repeat protein At3g24760; TrEMBL-Plants: tr|A0A0L9U5B6|A0A0L9U5B6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0584800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112424613..112429748) extracted from Lotus japonicus Gifu genome v1.2.
CTGGGTTTGATTCATAGCTGGGACCTTGGCTATAGAGAGATGATATGCGCTTCAGATTGTGCGAATGTAGTGGAAGTCCT CCACCTTCGAGATGATGTGGCATCCCTTTGGGCTAGAGACACAATTGCTCGTGTTAGAGCTATTTTGTAGCGTCGCTCTT GTTCATGTCCCAATTTTCTTTAACTAATAGGATAACACGTATAATCACCGCACGTGACCGACCGACACTTACACATAGAC CAACTACTACTACCCCATCTCTTCTCTTCTCTGCGTTGTGTCGTTGTTTCCATTTCGGCAATGTCCGATTTCACAACCCT AAGCTCCGATCTCATAGCCTCAATCCTTTCACTTCTCCCAATCCCCACTCTCATCAGAGCCTCCACCGTCTGCAAACAAT GGCACTCTCTCATCTCTTCCTCTTCCTTCTTCACCCTTCACTCCCTCCAACACCAACACCAACCTTGGTTCTTCATCCAT GGCATCCACAACATCTCCTCCAAAAACAACCAATCCTTCGCCTTCGACCCTTCCTCTAACTCATGGCTCCTCCTCCCAAC TCCAACCACCCCGCAACAGCAACACCAACCCAACACCTCCTTCATCGGCACCACCTCGTTTTTCTTCATCACCGCGCCGA ATTTCCTCTACACCCCGATCCTCCGCCCCCACTGGCACGCCGCGCCGCCGCTTCACTACCCCAGAATCAACCCTCTTCTC GGTGTTTTCCATGATGATAAATCTCGATCTCTTCAAAACCCTAAGTTCATTGTTGTCGGTGGTGTTAGGTTTATTGGGAA CCTGGTTGATATTGAGGACCGTTTGGATGTTGAGATTTATGATCCGCTTTTGGGTTATTGGGAACTGGGTCCTCCTCTTC CTCAAGATTTCAGATCTGGGAACTCGTCTTCTTCGTTATCCTCTGCTTTGTTCAAGGGAAGATTCTATGTTTTTGGGATT TACTCTTGCTTTGTTTCCTCATTCGATCTGCACCGTCGTGTTTGGAGTGAGGTTAGGATTCTGAGGCCACCTGGGGTTGT GTTCTCGTTCTTGATTGCGTCTAGGGAGACGCTGGTTCTGGCTGGGGTTTGCAATTCCAATTCGCCTCGTGGGTCTTCGT TTAAACTGTGGAGGGTTGATGAGAGGACTATGGAGTTCAGTGAGATTGGAGTGATGCCTCATGATTTGCTTTTGAGCTTG TTTGATGGTGATGAGGATGATAGGTTTGCTAGCTTGAAGTGTGTTGGGTTGGGTGATCTTGTGTATGTTTTCAATGAAGA TTACCACAAGATGTACCCAGCTTGTGTCTGTGAGATTCATGCTGAGTCTGGGAAGTGTGAATGGAGGAGAGTGCCTCAAT TGCCATCACTCATGAACAGGTTTCATAAGGTCATTAGCTTTTCTTCAACTGTTCCACTGCATAGTATTCTGGGTCAACGT GAACTTCAGTAACCCCACTGCCCATCATCATATCATATCCAACTAGGTACTCACTGTTTCTTTACTTCACCTTATTGGCT TCATGATTCTGGGAAATTCCTGTGACCTTTGGGTTTGATTTTGTGTTCTGTTATGTTCTGTTTCGCAAATGATTGTGTTT ACCTGTTGATGATGAAATAATTTATAATCCCAATTATCTTATGCGGACTTTGTTTGATTGGCTTAATTAACTCAAAGTAT TACACCAAATGCACGCTAACAGTTTGAGCTTTCAGCCCTTATTAAATTTAAGTGTTAGTCTAATGATTGCTTGATGTAAA TGATTTTTTGAACAGTAGATATGTAGTTAATTGTTCCCTTATAAAATGAGTTGCACTTGATAGGGTAACAGTTATAAGCT TACTTACTGGCCAGATTTGTTGCAAGACTATGTAATACTTCCTCTTTGTTAGTTAACTTTACCAGTTCATATAAGTGATC CTTAGGTCTAAATTTCCTTGTCTGGTTTCTACTATAGTGCAAGGTTTTTAAAAGTAGTACTCTGTTTGGAAAGAGTATGG ATTTTACTTTTCTGTTTTATGATAAATTATTTGGTTGATTATTTTGACTTGATTCATAATGGAGAAAACGTTTTCGTCTT CTGTGATGCTAGGAAGATATTTCATATTTATGTATTTCTGCGGCATTTAGTGTTCACCTCTATTGGGAATGGTGCAAGTC AAAGTTGGGAAAGAAAACATGTTTTAAGATCTTCTTTACTGTTTACTTGCTTGCTGTTTTCTACTATTTTACCACAATGT GGTGAGTTACCATTCTTAAGATGGAAAATTAGTTCTCTGAATTGCTTGAGACATTAGAGTAACTCACTGTCTGCATAATC CTTTATATGAAGACAAAAAGCAAATTAGTGATATTACAAATTAAACTACAATTCAAACCCCTATTTAACTTGATCTCTAT TTTCTGACAAACTCTATTTTCCTCAACAAACTTAACTCTATCTTAACAAACTCTAACAAACTCTTTTGTCCATAACAAAC AAAACTCTGTCTTAACAAACTCTATAATTAACAAACTCTATTTAATAAAATTATCTGACATCTAATATTTTGCATGGATA AAATGAGTAGTAAAGTTATCTGAGAGTACCATTTTGCTCCCAGCTGCACTAAGCTGCTTATTTGTCCCTTCACAGTCAAC TTGATAAATAGTAAATTTTAGATTTTACATGATAATTTTTTTAAGCCTTTGATGATTTAATGAATGAATAGCGCCCAACC CCATGGTCTTGATATATTTTGATTCTTTAATTCCAAGATATAGGTCAGTTGAAGCCTGAAGGTTCAGATTGTCTGATTAG TTCTGGTGGTAAACTTACGCCGTTAAATTAACTAAATAATTATTATGAATGGAAATTCAGATCCACTATGTGCTAACGGC AAAGATCAAGTGTACAGATTTGTGGATGATTAGGGAAACAATTAAGCTATACATGCAAACCAACACAAATTTTAAATCAT AAAGTATCCTTTTTTTTTTGGTACATATAAAGCATCCTTTAGAATGAACTTCCAATTAAATGAACATCTAAAAAAATAAT ATATGGGAAAAGTTTCCAGGAATTGCTCTGGTTGAGAGTGAGGTTTCTCTGTTTGTTAGTGAGTTGAGACAATTATCATT GCGTTGATATTGATATCAGTAGCTTTTGAGCCATTAACCTTTCAAGATCAAGTGGATCCACTGACCCCAGTTAAGATAAA ACAGTTATAATATATAATGTCCTCTATTGATAGGAATCGAAATACAATATACATTTTCTAGTTTTTGAGATTGTTAGTTT CCGACTTGGTGGGAGTCTCTGACCAAATGATCTGGAGTTTAGAATTTAAGCACAAAGGTAGCTCAGCATGTATACTGTCC ACGCAAGAGCCAATTGGACTGGTGACGATGCTTGCGGTGAGCTCTTGCCTGAGAGGGTACTAAGCTTTTTTTATGACATC TATGCATGGCACTTTTCTCAGCTTATGTGGAAACGTCTGTAACAGTAGCTCATTGTAACAACTGAGTCACACTTCATGAT TTATTTTTTTTGTATTTTGAATTTTTGAATATTAAGTATGTTCGTAGCTTTTAATGTGCTTGAAGTTTATTTTAATTGAA TTTTTCTTGAGTGGTTGAGGTTGAGATTTTAGCAACTTTTGTTTACAAGTTGATTACCATTATTGAGGTTTTCCATTATC TCTATTTTCTACTTTTAATTTTATCACTTATAATGACTTTCTGAATCTACCTCCAATTTCGGTCAACAATATGATGCTGT TGTTGATTTTTATCCAAGTAACGCCATGATTTTACAATTCAACAGAAAACAAAGGCAATTCTCATTTCTAAAGAAGAAAG GTTCAGTTAGAAGAACCATTTGCTCAAGACTGTAGCTTACAGATGCTGCTGCTCAGCTGCACCAAGGGCTTGTACATATT CACTTCAAATAAGAGCAGAAGCTTTTGTTAAGTATGTAACAGATAATCATAAATGTGTGTATATGATTGTTTAGGTGTCA TATATAGCATGGATCAATCAATCCTTTGCCTTCTCTTCCTATATTTTCCTAGTGATATTACTGTATGATATTTGTCATTT CAAATGCAAATTAAAGTAATCAAACTATGTGAATCATTTAGTTTTATGACGCATTTCTGAGTACTGATATCGTGAAAGTT GTTCTCATATGGGTTGCAGTGCCCATTTTACAACAATGGGGATGTTTGGCAAATTGGTTGAGGATTGATTCCATTGTCTA AAATCAATTTACTTCTATTTATTTTCAGCCCATTTTAACATTCAAGCATTTAACTTTCAGTTTTTATGTACATCATTCTT TTAATTTACATGTAGTTTACAACCTTCGAGCATTTACTTTTAATCTACTTCTTGAGTAATGTAACAACTGATAATGATAT GATGATATATGTAGTCTTTAACTTGAAGTTACTATGATTCCTACATGAGTAGTTATATGTTTTAAAGTCGTTAAGCCTTA TCGGTAACGAGGTGATTATAAAAGGCGATAATTAGGTATATTATGAATTATGTTGAGGAATGTGATTGATGTAGATGAAT TTCATTCATCTTTTTTTTTTGGGTCAAATTCATTCATCTTATGTAATGAGAGTAAATATCTATGAGCCACTTAATTGTGT AAGACTTTGAAATGCATGGTTATGTTGAACAAGTGTAAATAAGAGCTGTCTATTTCTAGAAAGTTTGCTTGGGTATCAAT GAACATAATTTAGATGATTAAGAATGTCACATCAATGCCTTGAGCTCAACTTTTTTTAGGGAATATATATGAAAATTGCA TTAGAAAATATTCGGTAAAATCTAAAAGAGTACATGATTGGATGCAAGGAGGTACCTTATTGAACAAAGACTCATTAGCA TTTGAAAGAAAAAACTTATCCAAGTAATGAGCTACGTTATTAGCTTCCTTATAAATATGATTAAAGGTCATTGCAGCAAA GAAATGGACCATTTTTTTAACTTCCACTATGACTAGCCCCGGAAAATTGTTTATCATCTCTAAGCTTTCAAGTACTTGAA CCACTCTTTCACAATCGGTCTCCAACGTCACTTGTCTTGCCCCAATTTCGACACCCAACATCAACCCTTCAAGAACACCC AAATACACCTTGGCTC
CDS sequence (LotjaGi1g1v0584800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGATTTCACAACCCTAAGCTCCGATCTCATAGCCTCAATCCTTTCACTTCTCCCAATCCCCACTCTCATCAGAGC CTCCACCGTCTGCAAACAATGGCACTCTCTCATCTCTTCCTCTTCCTTCTTCACCCTTCACTCCCTCCAACACCAACACC AACCTTGGTTCTTCATCCATGGCATCCACAACATCTCCTCCAAAAACAACCAATCCTTCGCCTTCGACCCTTCCTCTAAC TCATGGCTCCTCCTCCCAACTCCAACCACCCCGCAACAGCAACACCAACCCAACACCTCCTTCATCGGCACCACCTCGTT TTTCTTCATCACCGCGCCGAATTTCCTCTACACCCCGATCCTCCGCCCCCACTGGCACGCCGCGCCGCCGCTTCACTACC CCAGAATCAACCCTCTTCTCGGTGTTTTCCATGATGATAAATCTCGATCTCTTCAAAACCCTAAGTTCATTGTTGTCGGT GGTGTTAGGTTTATTGGGAACCTGGTTGATATTGAGGACCGTTTGGATGTTGAGATTTATGATCCGCTTTTGGGTTATTG GGAACTGGGTCCTCCTCTTCCTCAAGATTTCAGATCTGGGAACTCGTCTTCTTCGTTATCCTCTGCTTTGTTCAAGGGAA GATTCTATGTTTTTGGGATTTACTCTTGCTTTGTTTCCTCATTCGATCTGCACCGTCGTGTTTGGAGTGAGGTTAGGATT CTGAGGCCACCTGGGGTTGTGTTCTCGTTCTTGATTGCGTCTAGGGAGACGCTGGTTCTGGCTGGGGTTTGCAATTCCAA TTCGCCTCGTGGGTCTTCGTTTAAACTGTGGAGGGTTGATGAGAGGACTATGGAGTTCAGTGAGATTGGAGTGATGCCTC ATGATTTGCTTTTGAGCTTGTTTGATGGTGATGAGGATGATAGGTTTGCTAGCTTGAAGTGTGTTGGGTTGGGTGATCTT GTGTATGTTTTCAATGAAGATTACCACAAGATGTACCCAGCTTGTGTCTGTGAGATTCATGCTGAGTCTGGGAAGTGTGA ATGGAGGAGAGTGCCTCAATTGCCATCACTCATGAACAGGTTTCATAAGGTCATTAGCTTTTCTTCAACTGTTCCACTGC ATAGTATTCTGGGTCAACGTGAACTTCAGTAA
Protein sequence (LotjaGi1g1v0584800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDFTTLSSDLIASILSLLPIPTLIRASTVCKQWHSLISSSSFFTLHSLQHQHQPWFFIHGIHNISSKNNQSFAFDPSSN SWLLLPTPTTPQQQHQPNTSFIGTTSFFFITAPNFLYTPILRPHWHAAPPLHYPRINPLLGVFHDDKSRSLQNPKFIVVG GVRFIGNLVDIEDRLDVEIYDPLLGYWELGPPLPQDFRSGNSSSSLSSALFKGRFYVFGIYSCFVSSFDLHRRVWSEVRI LRPPGVVFSFLIASRETLVLAGVCNSNSPRGSSFKLWRVDERTMEFSEIGVMPHDLLLSLFDGDEDDRFASLKCVGLGDL VYVFNEDYHKMYPACVCEIHAESGKCEWRRVPQLPSLMNRFHKVISFSSTVPLHSILGQRELQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| ProSiteProfiles | 1 | 47 | 47 | 10.027 | ||
| SUPERFAMILY | 2 | 65 | 64 | 7.46E-13 | ||
| Gene3D | 2 | 65 | 64 | 8.6E-10 | – | |
| Pfam | 4 | 46 | 43 | 3.3E-7 | ||
| PANTHER | 5 | 375 | 371 | 2.9E-89 | – | |
| PANTHER | 5 | 375 | 371 | 2.9E-89 | – | |
| SMART | 7 | 47 | 41 | 1.2E-5 | ||
| Phobius | 11 | 19 | 9 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 383 | 356 | - | – | |
| SUPERFAMILY | 56 | 359 | 304 | 2.35E-24 | ||
| Gene3D | 66 | 346 | 281 | 2.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0584800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…