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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585000 |
| Transcript ID | LotjaGi1g1v0585000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G48850.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GXU5|SDI1_ARATH Protein SULFUR DEFICIENCY-INDUCED 1; TrEMBL-Plants: tr|I1KZB5|I1KZB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0585000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112437683..112440631) extracted from Lotus japonicus Gifu genome v1.2.
TTGTGTGACACTGTAGCAAAGAGAGAATGTGGACGCACTCCCATCCAGATTCATAGTTATCCATGTACAGATTCCTTGTA TAAATAATCTTCCAAAGTCCTTGGTTCTATTTATGAGCGCAGACCCACTTTACATTAATCTCTTCAATCCCAATCATATC ATAAGGTACATGAGTTGTGTTGTGTTACAGAGAATTAGAGAGAGAGATGGAAGGAAGTGTCAACAAACAGAGCTCAAAAG GGAAGAAAGAAGACCTATATCATGTTATTCATAAGGTTCCTTATGGAGATAGTCCTTATGTCAAAGCCAAGCACGCTCAG GTATATATGTCTATGCCTGCGTTTTCAATTTCAGCACACTTTGAATTTGTTTGCTTTTTCAAGTTTGACTTAAACTGTGA TTTGGTATCTGAAAGTGCTATTGAAATTGAATAGAATTTCACATCGACTAAAGATATAAAGATATGACAGTCAGAATTGT CTTTATAAAAGATAGAGTAGTCTTTACTGCTAAACTAATTTTTGGGTTAAGTTAAGCTCAAATCATATATATCCTTATAT TATCAAAATTGTGCTAATTGCACCATCTTCTTATTCTTCATCTCTTTTTCTCTCTTAATTTTATGTTTGGTTCAAATGAA TGGTTTGAGTTGAGTGATGCAGTTTACAAAAGAATTGTATATAATTCACTATACTTTAAGTCTAGTTCTCAAATCTCTGA CAGTTGAATTATTTTCTTTATAATAATGAATAATCATTGATACTATTTTTTATTTTTATATTATTTTTGGAAATTAAATT AACAAATTAATAATGCATATATGAATTGATCAGTTGGTCGAGAAAGACCCAGAAGCAGCTATAGTGTTGTTTTGGAAGGC AATTAATGCTGGAGACAAAGTAGATAGTGCCTTGAAAGACATGGCTGTTGTGATGAAGCAATTAGATAGAACTGAAGAAG CTATTGAAGCCATCAAATCTTTTAGAGGCCTCTGCTCCAAACACTCCCAAGAGTCTCTTGATAATGTGCTTCTTGATCTT TATAAGGTAGGAGTATATTACAAGTGTCTTTTAAACAACTTCAAAAATCAAAAGGATGCTCCATCATGTACATATATATG ATCTTATTTTGATTCTATTCATTACTTAATTATTATTGTATCATTGCTGTCAAAAGTTAGAAAGAGTGCCGAAATGGGTT GGCACACCTAGCCCTTAGAACCCAAATTTCAGCGATTATCTCTCAAGAGTGTGCAAATCCATATTCATGAAGATCTCATT GCAGCATGTCACTAGAGTGGCCTTGTGCCAGCCCCCACAAGGGTAATACTTTACCCGTTGGAGATCCTGAGTATGTCATT GATACTCTGTCTAGTATAGGTATAGAGGTGACTCCATTTGTATTAAAAAAAAAGTTAGAATGGGGAGTATTTTTTATTAG ATTTAGTTAATTAAACAGTTATATGATCAATCTAATTTAGTATTCCGGAAAAATTCACAGAAATGTGGAAGAGTGGAAGA GCAAATTGAATTATTAAAACGAAAGCTAAGATTAATCTACCAAGGTGAGGCCTTTAATGGAAGGACCACAAAAACTGCTC GATCTCATGGCAAGAAGTTCCAAGTTTCCATCAAGCAAGAAACTGCACGATTATTGGTACTTAAACCTTTTACTTTGTTT ACATCGTTCTCAACACCTTTTCTTTTCTATTCTTTTCAATCTTAATTTTATTGAAACTTCAACAATAATTAAAACATGCC GTGAAACATTCAATCAGAGTTCATTGTGCATGTTTGAATACAAAATGAAAAAATCACAATGGACAACTTTAAAAGTTAAC AATCATTATTATTGTTTATTGTAACTGACTCATTTTAATTTTCCACTTATATCTAATCATGCACTTATATATGCATGTGA ATTTCCTTCAAAATAAAAGAGATATCTAATAGAGTTTTTTATTGTTAATATTCCACCAACTTATGTTTAGATACCTGTTA ACTTTAGTGCTAATGAGTAGGTAAAAGTTAACAGAACTCTTCTTATAAACTAGAATTAGGATGATGGCGTTAATTGTTAA CATAGCAAACACACATTTTATTCACAATGGAATTCAGATTTTAGTTTTATTTTTTTCCTTTTTGAAAATTCATAATTTTA GTATATTGATTAATTAAAGATGTGCAGGGAAACTTGGGCTGGGCCTACATGCAAAAATCAAACTACATGATGGCTGAGGT GGTGCTGAAAAAGGCTCAAATGATAGACACAGACGCCAATAAGGCTTGCAACCTGGGCTTATGCCTTATGAGACAACATC GTTATGAGGAAGCTTATTTCATTCTTGAACAAGTATTGCAATGCAAGGTTCCAGGTTCAGATGAAATGAAGTCCAGAAAT AGAGCTGAAGAATTGGTGGCAGAATTGAATGCTAACCTTCCCCAACCTGAGTTCTTGGATGCTTTGGGCCTTGATGATGA CTTGGTCAAAGGGATTGATGATTTGTTAAATGCATGGGGCACCAATAGAGCAAGAAGGCTTCCCATCTTTGAGGAAATCT CTTCTTTTAGAGATCAACTAGCTTGTTAATAGCTTATGCTTTTCTTATAATTTGTATTAATCTTAGGTCTAGGCTTGTGC AAAAAATTTATTTTCTTCTCTAATTAATTGCTTATTCTTCCTCTGCCCTTTTTCTCCTTAAAATGGTGAGGAATAATATA GATTCAGGTTTTCTTGTATCTGGTCTGATAATCTAATAATGGAATGGCACTCAAGAAATGTCTTCATTTACCATCCAATT CGTCTCTAACATGCACATTTTGATTTCCCAAGGTTTTCACGACCAACATCCATGAAACTAATTCGTGTCTTACACTAATA TTAACTCTTACGATACTGCTACAGTTTTTTTTGGCACATACATACCCACAGAAACGTGAGGCGTACATA
CDS sequence (LotjaGi1g1v0585000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGACAGAATTAGAGAGAGAGATGGAAGGAAGTGTCAACAAACAGAGCTCAAAAGGGAAGAAAGAAGACCTATATCA TGTTATTCATAAGGTTCCTTATGGAGATAGTCCTTATGTCAAAGCCAAGCACGCTCAGTTGGTCGAGAAAGACCCAGAAG CAGCTATAGTGTTGTTTTGGAAGGCAATTAATGCTGGAGACAAAGTAGATAGTGCCTTGAAAGACATGGCTGTTGTGATG AAGCAATTAGATAGAACTGAAGAAGCTATTGAAGCCATCAAATCTTTTAGAGGCCTCTGCTCCAAACACTCCCAAGAGTC TCTTGATAATGTGCTTCTTGATCTTTATAAGAAATGTGGAAGAGTGGAAGAGCAAATTGAATTATTAAAACGAAAGCTAA GATTAATCTACCAAGGTGAGGCCTTTAATGGAAGGACCACAAAAACTGCTCGATCTCATGGCAAGAAGTTCCAAGTTTCC ATCAAGCAAGAAACTGCACGATTATTGGGAAACTTGGGCTGGGCCTACATGCAAAAATCAAACTACATGATGGCTGAGGT GGTGCTGAAAAAGGCTCAAATGATAGACACAGACGCCAATAAGGCTTGCAACCTGGGCTTATGCCTTATGAGACAACATC GTTATGAGGAAGCTTATTTCATTCTTGAACAAGTATTGCAATGCAAGGTTCCAGGTTCAGATGAAATGAAGTCCAGAAAT AGAGCTGAAGAATTGGTGGCAGAATTGAATGCTAACCTTCCCCAACCTGAGTTCTTGGATGCTTTGGGCCTTGATGATGA CTTGGTCAAAGGGATTGATGATTTGTTAAATGCATGGGGCACCAATAGAGCAAGAAGGCTTCCCATCTTTGAGGAAATCT CTTCTTTTAGAGATCAACTAGCTTGTTAA
Protein sequence (LotjaGi1g1v0585000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWTELEREMEGSVNKQSSKGKKEDLYHVIHKVPYGDSPYVKAKHAQLVEKDPEAAIVLFWKAINAGDKVDSALKDMAVVM KQLDRTEEAIEAIKSFRGLCSKHSQESLDNVLLDLYKKCGRVEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVS IKQETARLLGNLGWAYMQKSNYMMAEVVLKKAQMIDTDANKACNLGLCLMRQHRYEEAYFILEQVLQCKVPGSDEMKSRN RAEELVAELNANLPQPEFLDALGLDDDLVKGIDDLLNAWGTNRARRLPIFEEISSFRDQLAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 14 | 302 | 289 | 3.1E-190 | – | |
| PANTHER | 14 | 302 | 289 | 3.1E-190 | – | |
| Gene3D | 14 | 136 | 123 | 2.3E-6 | ||
| SUPERFAMILY | 47 | 228 | 182 | 7.21E-12 | ||
| Coils | 112 | 132 | 21 | - | – | |
| Gene3D | 155 | 253 | 99 | 8.9E-11 | ||
| Pfam | 166 | 196 | 31 | 0.083 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0585000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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