Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585000 |
| Transcript ID | LotjaGi1g1v0585000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SULFUR DEFICIENCY-INDUCED 2; TAIR: AT5G48850.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GXU5|SDI1_ARATH Protein SULFUR DEFICIENCY-INDUCED 1; TrEMBL-Plants: tr|A0A1J7HMB0|A0A1J7HMB0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0585000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112437889..112440271) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGAAGTGTCAACAAACAGAGCTCAAAAGGGAAGAAAGAAGACCTATATCATGTTATTCATAAGGTTCCTTATGG AGATAGTCCTTATGTCAAAGCCAAGCACGCTCAGGTATATATGTCTATGCCTGCGTTTTCAATTTCAGCACACTTTGAAT TTGTTTGCTTTTTCAAGTTTGACTTAAACTGTGATTTGGTATCTGAAAGTGCTATTGAAATTGAATAGAATTTCACATCG ACTAAAGATATAAAGATATGACAGTCAGAATTGTCTTTATAAAAGATAGAGTAGTCTTTACTGCTAAACTAATTTTTGGG TTAAGTTAAGCTCAAATCATATATATCCTTATATTATCAAAATTGTGCTAATTGCACCATCTTCTTATTCTTCATCTCTT TTTCTCTCTTAATTTTATGTTTGGTTCAAATGAATGGTTTGAGTTGAGTGATGCAGTTTACAAAAGAATTGTATATAATT CACTATACTTTAAGTCTAGTTCTCAAATCTCTGACAGTTGAATTATTTTCTTTATAATAATGAATAATCATTGATACTAT TTTTTATTTTTATATTATTTTTGGAAATTAAATTAACAAATTAATAATGCATATATGAATTGATCAGTTGGTCGAGAAAG ACCCAGAAGCAGCTATAGTGTTGTTTTGGAAGGCAATTAATGCTGGAGACAAAGTAGATAGTGCCTTGAAAGACATGGCT GTTGTGATGAAGCAATTAGATAGAACTGAAGAAGCTATTGAAGCCATCAAATCTTTTAGAGGCCTCTGCTCCAAACACTC CCAAGAGTCTCTTGATAATGTGCTTCTTGATCTTTATAAGGTAGGAGTATATTACAAGTGTCTTTTAAACAACTTCAAAA ATCAAAAGGATGCTCCATCATGTACATATATATGATCTTATTTTGATTCTATTCATTACTTAATTATTATTGTATCATTG CTGTCAAAAGTTAGAAAGAGTGCCGAAATGGGTTGGCACACCTAGCCCTTAGAACCCAAATTTCAGCGATTATCTCTCAA GAGTGTGCAAATCCATATTCATGAAGATCTCATTGCAGCATGTCACTAGAGTGGCCTTGTGCCAGCCCCCACAAGGGTAA TACTTTACCCGTTGGAGATCCTGAGTATGTCATTGATACTCTGTCTAGTATAGGTATAGAGGTGACTCCATTTGTATTAA AAAAAAAGTTAGAATGGGGAGTATTTTTTATTAGATTTAGTTAATTAAACAGTTATATGATCAATCTAATTTAGTATTCC GGAAAAATTCACAGAAATGTGGAAGAGTGGAAGAGCAAATTGAATTATTAAAACGAAAGCTAAGATTAATCTACCAAGGT GAGGCCTTTAATGGAAGGACCACAAAAACTGCTCGATCTCATGGCAAGAAGTTCCAAGTTTCCATCAAGCAAGAAACTGC ACGATTATTGGTACTTAAACCTTTTACTTTGTTTACATCGTTCTCAACACCTTTTCTTTTCTATTCTTTTCAATCTTAAT TTTATTGAAACTTCAACAATAATTAAAACATGCCGTGAAACATTCAATCAGAGTTCATTGTGCATGTTTGAATACAAAAT GAAAAAATCACAATGGACAACTTTAAAAGTTAACAATCATTATTATTGTTTATTGTAACTGACTCATTTTAATTTTCCAC TTATATCTAATCATGCACTTATATATGCATGTGAATTTCCTTCAAAATAAAAGAGATATCTAATAGAGTTTTTTATTGTT AATATTCCACCAACTTATGTTTAGATACCTGTTAACTTTAGTGCTAATGAGTAGGTAAAAGTTAACAGAACTCTTCTTAT AAACTAGAATTAGGATGATGGCGTTAATTGTTAACATAGCAAACACACATTTTATTCACAATGGAATTCAGATTTTAGTT TTATTTTTTTCCTTTTTGAAAATTCATAATTTTAGTATATTGATTAATTAAAGATGTGCAGGGAAACTTGGGCTGGGCCT ACATGCAAAAATCAAACTACATGATGGCTGAGGTGGTGCTGAAAAAGGCTCAAATGATAGACACAGACGCCAATAAGGCT TGCAACCTGGGCTTATGCCTTATGAGACAACATCGTTATGAGGAAGCTTATTTCATTCTTGAACAAGTATTGCAATGCAA GGTTCCAGGTTCAGATGAAATGAAGTCCAGAAATAGAGCTGAAGAATTGGTGGCAGAATTGAATGCTAACCTTCCCCAAC CTGAGTTCTTGGATGCTTTGGGCCTTGATGATGACTTGGTCAAAGGGATTGATGATTTGTTAAATGCATGGGGCACCAAT AGAGCAAGAAGGCTTCCCATCTTTGAGGAAATCTCTTCTTTTAGAGATCAACTAGCTTGTTAA
CDS sequence (LotjaGi1g1v0585000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAAGTGTCAACAAACAGAGCTCAAAAGGGAAGAAAGAAGACCTATATCATGTTATTCATAAGGTTCCTTATGG AGATAGTCCTTATGTCAAAGCCAAGCACGCTCAGTTGGTCGAGAAAGACCCAGAAGCAGCTATAGTGTTGTTTTGGAAGG CAATTAATGCTGGAGACAAAGTAGATAGTGCCTTGAAAGACATGGCTGTTGTGATGAAGCAATTAGATAGAACTGAAGAA GCTATTGAAGCCATCAAATCTTTTAGAGGCCTCTGCTCCAAACACTCCCAAGAGTCTCTTGATAATGTGCTTCTTGATCT TTATAAGGGAAACTTGGGCTGGGCCTACATGCAAAAATCAAACTACATGATGGCTGAGGTGGTGCTGAAAAAGGCTCAAA TGATAGACACAGACGCCAATAAGGCTTGCAACCTGGGCTTATGCCTTATGAGACAACATCGTTATGAGGAAGCTTATTTC ATTCTTGAACAAGTATTGCAATGCAAGGTTCCAGGTTCAGATGAAATGAAGTCCAGAAATAGAGCTGAAGAATTGGTGGC AGAATTGAATGCTAACCTTCCCCAACCTGAGTTCTTGGATGCTTTGGGCCTTGATGATGACTTGGTCAAAGGGATTGATG ATTTGTTAAATGCATGGGGCACCAATAGAGCAAGAAGGCTTCCCATCTTTGAGGAAATCTCTTCTTTTAGAGATCAACTA GCTTGTTAA
Protein sequence (LotjaGi1g1v0585000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSVNKQSSKGKKEDLYHVIHKVPYGDSPYVKAKHAQLVEKDPEAAIVLFWKAINAGDKVDSALKDMAVVMKQLDRTEE AIEAIKSFRGLCSKHSQESLDNVLLDLYKGNLGWAYMQKSNYMMAEVVLKKAQMIDTDANKACNLGLCLMRQHRYEEAYF ILEQVLQCKVPGSDEMKSRNRAEELVAELNANLPQPEFLDALGLDDDLVKGIDDLLNAWGTNRARRLPIFEEISSFRDQL AC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 109 | 104 | 1.3E-143 | – | |
| PANTHER | 6 | 109 | 104 | 1.3E-143 | – | |
| Gene3D | 36 | 198 | 163 | 2.6E-14 | ||
| SUPERFAMILY | 39 | 168 | 130 | 8.35E-13 | ||
| PANTHER | 110 | 242 | 133 | 1.3E-143 | – | |
| PANTHER | 110 | 242 | 133 | 1.3E-143 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0585000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…