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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0587000 |
| Transcript ID | LotjaGi1g1v0587000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine incorporator; TAIR: AT1G16180.1 Serinc-domain containing serine and sphingolipid biosynthesis protein; Swiss-Prot: sp|A7S4N4|SERIC_NEMVE Probable serine incorporator; TrEMBL-Plants: tr|V7B3W7|V7B3W7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0587000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112712558..112715988) extracted from Lotus japonicus Gifu genome v1.2.
AGTGACCCCAACCCAAGACGAGGACGCGCATCAAAAGAAGCAAAAAGCTAAGTCTCTCACAACATTCTTCAACCTTCTCC TCTCTCATCACTCTTCGTCGTCGTCGTGTTCGTCTGCGCCCTAACCAAACCACCGAGTCAAATTCCACCACCTCCGATGT GGGCTGCTTCGTGCCTCGCATCATGCTGCGCCGCCTGCGCATGCGACGCCTGCCGCACCGTCGTCTCCGGCATCAGTCGC CGTTCCGCCAGGATCGCCTACTGCGGCCTCTTCGCTTTCTCCCTCCTCGTTGCTGGAATTCTCCGTGAAGTCGCTGCTCC TCTCATGGAATCTATCCCCTGTATCTATTCCCTTCTTCAATTTCCTTATTCCGCAATCAATTGCTTCATATTCCCCTTTT TGATTTGATTTTAGGTTTGAAATAGATTGATTGATTGATTTGTTGTTCTTGTGTGATTGATGCAGGGATTAATCACTTCA AACATACTCCTAGCAGAGAATGGTTTGAGACTGATGCTGTTCTTAGGGTTAGCTTGGGGAATTTTCTGTTCTTCACTATC CTTGCGGTTCTGATGGTCGGTGTGAAAAATCAGAAGGATCCTCGTGATGGCTTGCATCATGGGGGTTGGATGATGAAGAT TATCTGTTGGTTCCTTTTGGTAATCTTTATGTTTTTCCTTCCAAACGAAATCATCAGCTTTTATGGTAAGAATTTATGCT AATTTGATTTCAGTTTGTAGTTTCAAATTGGTTCCTTCCTTGGCTTGTAGAATTTTATGTGCATTTGATTCTTAAGGGGC AGTTTGTCTGCCTGTGACTTGCGATTGCATTGAATCGAATCGAAATTTGATGAATCTATTTGGGATGATAAAGCATTTAG CTGACATATTTACACTGATAATTGCTTTTTCATAAATAGAAGTCTATAAATAGGAAGTATTTTGTTTTTGAAGAAACTAC TTTCTAAATGTCATTTTTGTTAGACTTTTTATAAGAATTTGATTCTTAAGGGGCAGTTTGTCTGCCTGTGAGTTGAGATT AAATTGATGAGTGTATTTCGGATGATAATAGCATTTAGCTGACAGCTTTACACTGATAATTGCTTTTCATCAATAGAAGT CTATTACTAGGAAGTATTTTTTTGAAGAAGTTACTTCCTAAATGTCACCATATTTTTGTGCATTTTTCGAATGGAAATGT CATGTTGACACGGCCCCTCGAAATGAAAACTGTCTTCTTGCTCATGCAACTTTATTATTCATTAATTGCACATCAACACC ATATGGACATTTGAAGAGCATGTGGTTATTGGGAGATGTAAGTTATATCTGGAATGAAAGGATTACTGTGGATCAATCTT AGATTCTTTGAATTTATGTATTTTATTTGTTTGAGCTAAGGTTTGGTGGCAATCAGGAAACTTCTCTCAATTACAACAAT ATAGTTCTTAATATCATTTGATCATTCTATAGTTTTTTAAATGCCTAGTATAGTAATTCGAATTTAGAAGCTTGTTTATA CTCTTGACTTGGAAAACAATTTGCTATTCAGTATCTTATAGGAGCTATAAATTTCAAGATACAAAAAATTGCTTCTTGCT TAAACAATTGAAATTGAATGTCAAAATAAAATAGATGCTTTTTTGTTTGCATTTGACATGTACATTATTTCATTGTTTAT GATTATGTTTATTTGCAGAAACAATATCAAAGTTTGGGTCGGGTATGTTCCTTCTTGTTCAAGTTGTGCTCTTGTTGGAT TTCGTTCATGGATGGAATGACAAATGGGTTGGATTTGATGAACAATTCTGGTTAGTTTTAGGTTTTTGCTGTATTACTTA ACTCCTGTAATATAGTTTCCTTTACTTGACATTATAGTTTTGAATGTGAATTTCTGTATTTAATTGTTTCTTTATTTATA CAGGTATGTTGCTCTGTTTGTTGTTTCACTTGTTTGTTATCTGGCTACATTTGTGTTCTCGGGAGTTCTCTTTCACCTTT TCACACCATCTGGACAAGACTGTGGAATCAATGTCTTTTTCATCACTATGACCCTGATTCTTGCATTTGTTTTTGCCATA GTTGCTTTGCATCCTGCAGTAAGTTCATTTATTAATTTTCACTGCAGCTAACTATTACTCATCTGGTTATCTTGTTTTTC AATGTAGAATGTTAATATACCAAATTTGTCTCTCCTGTGATATTGAATGCCATTGCTTGAAAGTTCTAAATGATACATTT TCCATTTGTTTTAACTTTAACACATGGCGAAAATGTCACTGCATATATATATATATATATATATATATATATATATAATT TGTTCATTATTAAATCTGGTTTCTTATCTGCTATCTATGTTGTCTTAGTTCTGTATTTTTTGTGGAATGTGATCCTGGGA AAAATGGTGTTACAAGTATATTATTCTTGTCAGCATTATTTTGTGTTTAGTTAGGAACTGGTTTTATTCTATTCTGCCTA TATGTAAACTATTCAGTACTTTGGTTGGCCCTTGAGTTGTTTGTATTATTCTCATTTACAGGTAAATGGAAGCATTTTGC CTTCTTCAGTAATATCATTGTACTGCACTTATCTCTGCTATAGTGCACTGGCTAGTGAACCCAGAGATTACGAGTGCAAT GGTCTGCACAAACACTCAAAAGCTGTTTCTACTGGCACTCTTACTTTGGGTTTACTTACCACTACTCTATCAGTTGTGTA TTCTGCTGTGCGTGCTGGGTCTTCTGCCACAGTACTTTCCCCACCAAGCTCTCCTCGTGCTGGTAAATTCTTTAATACAA TAATGATATCTAAAAACACTTTTGTTTGCCGAGAAGCTTGGTTAAATTTTGGCACTGTGAAGGACAATAATGAATTTTCG TTGTTATTTGCTAAGCATCAAAATACCAAAGTTCAAGACTGACAAGAGAAATGCTAACAACACTTATGAATTCATTCATT AACACACTCAATGTGATTAATTTATTTCTTACAAACTTAACACATTTTTCAAAAAGTGAGGCGAATGTATTGACATTTTC AAAAATAGATCAATTAATTATATGTGGAGTATGTGGGAGAGTGTCTTCAAAAGAGTGTGTTCCTAGCACTACTCGTTCTG ATAACTTCTCAATTTGTGGTTATTCTGCAGGCAAGCCGTTGCTTCCATTGGATGGAAATGAGGAAGAAAAGAATGAGAAA GCGAAGCCAGTTACATATTCATACTCCTTCTTCCACTTGATTTTTTCTCTAGCTAGCATGTATTCTGCAATGCTTCTGAC AGGTTGGTCCACCTCTGTTGGGGAGAGCGGGAAGTTGGTTGACGTGGGGTGGCCTTCGGTCTGGGTTCGGATTGTAACTT GCTGGGCAACTGCTATACTCTTCTTATGGTCTCTTGTAGCTCCTATCATGTTCCCAGAGAGGGAGTTCTGA
CDS sequence (LotjaGi1g1v0587000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGCTGCTTCGTGCCTCGCATCATGCTGCGCCGCCTGCGCATGCGACGCCTGCCGCACCGTCGTCTCCGGCATCAG TCGCCGTTCCGCCAGGATCGCCTACTGCGGCCTCTTCGCTTTCTCCCTCCTCGTTGCTGGAATTCTCCGTGAAGTCGCTG CTCCTCTCATGGAATCTATCCCCTGGATTAATCACTTCAAACATACTCCTAGCAGAGAATGGTTTGAGACTGATGCTGTT CTTAGGGTTAGCTTGGGGAATTTTCTGTTCTTCACTATCCTTGCGGTTCTGATGGTCGGTGTGAAAAATCAGAAGGATCC TCGTGATGGCTTGCATCATGGGGGTTGGATGATGAAGATTATCTGTTGGTTCCTTTTGGTAATCTTTATGTTTTTCCTTC CAAACGAAATCATCAGCTTTTATGAAACAATATCAAAGTTTGGGTCGGGTATGTTCCTTCTTGTTCAAGTTGTGCTCTTG TTGGATTTCGTTCATGGATGGAATGACAAATGGGTTGGATTTGATGAACAATTCTGGTATGTTGCTCTGTTTGTTGTTTC ACTTGTTTGTTATCTGGCTACATTTGTGTTCTCGGGAGTTCTCTTTCACCTTTTCACACCATCTGGACAAGACTGTGGAA TCAATGTCTTTTTCATCACTATGACCCTGATTCTTGCATTTGTTTTTGCCATAGTTGCTTTGCATCCTGCAGTAAATGGA AGCATTTTGCCTTCTTCAGTAATATCATTGTACTGCACTTATCTCTGCTATAGTGCACTGGCTAGTGAACCCAGAGATTA CGAGTGCAATGGTCTGCACAAACACTCAAAAGCTGTTTCTACTGGCACTCTTACTTTGGGTTTACTTACCACTACTCTAT CAGTTGTGTATTCTGCTGTGCGTGCTGGGTCTTCTGCCACAGTACTTTCCCCACCAAGCTCTCCTCGTGCTGGCAAGCCG TTGCTTCCATTGGATGGAAATGAGGAAGAAAAGAATGAGAAAGCGAAGCCAGTTACATATTCATACTCCTTCTTCCACTT GATTTTTTCTCTAGCTAGCATGTATTCTGCAATGCTTCTGACAGGTTGGTCCACCTCTGTTGGGGAGAGCGGGAAGTTGG TTGACGTGGGGTGGCCTTCGGTCTGGGTTCGGATTGTAACTTGCTGGGCAACTGCTATACTCTTCTTATGGTCTCTTGTA GCTCCTATCATGTTCCCAGAGAGGGAGTTCTGA
Protein sequence (LotjaGi1g1v0587000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLLVAGILREVAAPLMESIPWINHFKHTPSREWFETDAV LRVSLGNFLFFTILAVLMVGVKNQKDPRDGLHHGGWMMKIICWFLLVIFMFFLPNEIISFYETISKFGSGMFLLVQVVLL LDFVHGWNDKWVGFDEQFWYVALFVVSLVCYLATFVFSGVLFHLFTPSGQDCGINVFFITMTLILAFVFAIVALHPAVNG SILPSSVISLYCTYLCYSALASEPRDYECNGLHKHSKAVSTGTLTLGLLTTTLSVVYSAVRAGSSATVLSPPSSPRAGKP LLPLDGNEEEKNEKAKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATAILFLWSLV APIMFPEREF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| PANTHER | 5 | 410 | 406 | 4.7E-202 | ||
| PANTHER | 5 | 410 | 406 | 4.7E-202 | – | |
| Pfam | 9 | 409 | 401 | 4.2E-112 | ||
| Phobius | 12 | 15 | 4 | - | – | |
| Phobius | 16 | 30 | 15 | - | – | |
| TMHMM | 30 | 49 | 20 | - | – | |
| Phobius | 31 | 49 | 19 | - | – | |
| Phobius | 50 | 78 | 29 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 79 | 101 | 23 | - | – | |
| Phobius | 102 | 115 | 14 | - | – | |
| TMHMM | 114 | 133 | 20 | - | – | |
| Phobius | 116 | 135 | 20 | - | – | |
| Phobius | 136 | 146 | 11 | - | – | |
| Phobius | 147 | 167 | 21 | - | – | |
| TMHMM | 148 | 167 | 20 | - | – | |
| Phobius | 168 | 178 | 11 | - | – | |
| Phobius | 179 | 202 | 24 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 203 | 213 | 11 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 214 | 235 | 22 | - | – | |
| Phobius | 236 | 240 | 5 | - | – | |
| Phobius | 241 | 260 | 20 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 261 | 339 | 79 | - | – | |
| TMHMM | 278 | 300 | 23 | - | – | |
| MobiDBLite | 309 | 332 | 24 | - | – | |
| Phobius | 340 | 361 | 22 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 362 | 380 | 19 | - | – | |
| Phobius | 381 | 405 | 25 | - | – | |
| TMHMM | 381 | 403 | 23 | - | – | |
| Phobius | 406 | 410 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0587000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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