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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0588200 |
| Transcript ID | LotjaGi1g1v0588200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein-retaining receptor; TAIR: AT3G25040.1 endoplasmic reticulum retention defective 2B; Swiss-Prot: sp|Q8VWI1|ERD2B_ARATH ER lumen protein-retaining receptor B; TrEMBL-Plants: tr|I3SXL4|I3SXL4_LOTJA ER lumen protein-retaining receptor; Found in the gene: LotjaGi1g1v0588200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112844393..112850406) extracted from Lotus japonicus Gifu genome v1.2.
ACGTCATGGTTAGTCGAAATTAGGGGAAAAAATACAATTAACCAAAAAAAAAAAGAGAGAAGGAAAGTAAAGAGGAGTGA GAGTATGAATGAGCAACTCCAAATCTGACATGTTGTGAAGGAAGGAAGTCTTGCGTGCTCGCCCGTTTGCAACAGCCACA CACACACACACACCAATAGGAAGAAGGAGTGCGCAACGCCGCTTGACCCACCCTTTTCAGATCCGATCCGATAGCAAACA TGAACATTTTCAGGTTATCTGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTCCTCCTCAAGATCCACACCATCAAA TCCTGCGCTGGTATCTATCTATCTTCTCTTCTCACCATTCTCTTTCGATTCAATGCATTACTATGCTGTTGTTGCATCAA TTTTAAACAAGTATTTGTAATTCATACTTTAGGTTTCAGTTTAATAGCAAATGCTAAATGCAGTAGGAACCAACTATATA TACATCGATATCATAGTGTAATTGTAAAAGATTGATTGAGTGTAATTTGGGAATACCATGTGTGTTCAAATTTTGAGCAA CCTTTAGCTGTTTCTGTTTCTCTTTGAGCTGGATATGCTGAATTCCAAAGTTCTATGTTGGTTAAATTTTTGAAAATGAG AGAATCGTGTAGGCGTTGACGGTTATAGACATAGATCAATGAGGAGAACTGTGAGTCTTTAATTTGATTTTTGGGGATAT TTTTCTTACTGACTTTGGGTGCATCTTATTTTTATGCAGGTGTCTCATTGAAGACTCAAGAACTCTACGCACTTGTTTTT GCTACTCGCTATTTGGATATCTTTACCAGTTATATATCACTATATAATACCACTATGAAGTTGATATTCTTGGGAAGCTC ATTTTCTATTGTATGGTACATGAGGCACCACAAGATTGTTCGTAGATCATATGACAAAGATCAAGATACCTTCCGTCATT ATTTTCTCATATTGCCCTGTTTTCTGTTGGCTCTACTTCTCAATGAGAAATTCACTTTTAAGGAGGTTAGTATGCACCTG CTATTATCCGTTGTCTGTAAATGTTCTGTTACAATATATTAGACTTATAATGTATTTATTATTGGCTAGATTAGTTACCA GCGGTTAGCAATAGATAGCAGTAACAGAAATCTGTTAGAGAGTTAGATTTCGTCCATGACATACATGATTACATGTCTTT TTGACTATTTTTAGAGCTCATTGTCCATGACTTTAACTTTCATCTACTTTCCAAAATCATACTTATGCATGCAATAGGTG ATGTGGGCATTCTCCCTGTATTTGGAAGCTGTAGCTATACTTCCTCAGCTAGTACTGTTGCAGAGAACCAGAAACATTGA CAATTTGACAGGACAATATGTCTTTCTTCTTGGGTAAGCTTTGTTCTTTACCAGATTTTAAGCATTATTATATTTTCCAG GACTTCTGTGATTCTTGTTATTGCATTAGTATTCGAATTAGTACCTATTATGTTCTAAAGGTGTTTCACCTACTGATCAA CAGCCAAATAACTGGAAGATATTATCAATGTTGATATCTATTCCTACATAGAATGATCTCAGTAGTGTTTTCATGTGAGA TGAGATAGGAATGGGAGTTGAAATTTGATATAGTTCCCGGTCATTGAAATCAGTAACACTCTTCAAATATTGGTTGATTT TGTTCTCATAAGAACATCATAGCATTTCATCTGATGAATGGTATAGGTTCCGAAATAGTGCTTCTAACTCACCTAGGCAG AGAGTAGCTGATGCTGATGCATGCGACAAAAGGAATAATAAATTGTTAGTTTGCAGTACTGTCCATGGGCCAAACTGTCC TTTGGCTTCATTAGAAATGCTCAATGAAAATGGCCTTTTATATTATCATGAGTTGGAGTTTAGTATATGCGAAACCTAAG TTCTGACTGATTATAGTCCCCAACTTTTTGCAACACTTAAGGTATGTGTACTCTCATAAAATAGAGGGTTAATCGTCTAC TTGGTCCCTGTCTTTGTCTCGCCGTCTGAAATTAGTCCCTCCCCGGAAAATTTGCAAATCTGGGTCCTCTCGTTTGCAAT AAGTCTGGAGCAGGTCCTCGCCAGAACCCGGAACTCCGGCGAGTGATGAATAGGCATGCTGACTAGATATATGAGGCTGA CGTGTCAAGGAAAAAAAATATAAATCAATTTTATTAATTAAAAGAACCCTAATTAACTAACTTATCCTAATTGGGGCCCA AAACAATTCTCTATTTCTGAAATCCCCCAAATTTTCCAATCATATGACATTAATTTAGGGTTCCTGAATCAATTGCTTCT TCTTCCTCTCAAACTCAGAACCTTCTGAGCATCTTCTCATCTTCTTCTTTCCCTCAATTGCTTCTTCTTCCTCTCAAGCT TGTGCCTGCATGTCCATGCACCATCTCCGCCCGAATCTGCGAATCGTCCTCCATCTATTATATTTTTGGGGGAAAGGTTA CGGGTTTGGGTGTGGTGGGTTGCGAGTGAGGGTGGGGATGGGGGTGAGGTTGCGGGTTGGGGGTGGGTTGCGGGTTGGGG GTGGGGTGGGTTACGAGTAGGGGTGGGGATGGGAGTGGGTTCCAGGTGAAGGTGGGGGTGGGTTAAGAGTGGGGTTGGGT TGCAGGTGAAGGTGGGGATGAGTATCTGGAATGGGTTTCTGGGTGGGGGTGTTTCTTACTCTGTGTCAATTGGTGATGTT GCAGTGAGGTGATGAGGAAGAAAACATGTAAACAGTTGAAGCCACCCATTAGGATAAGTTAATCAAAACCAAAGCAAGAG CCAAGAGATGTTTTATTTAAAAAGTGAATCATCTGGAGGAGAGGAACGAAAAACCAGAGCAAGAGCACATTACAGGAGAG GAAAAATAGAAAGCTAGAAAGTGAATCTTCTTGTGTTTTCTTGTTTGGATCTGCAATTGTGTTTCTGGGATCTGGTTTTG ATATTGAAGACCAAGGGATTTTTTTATTTTTATTTTTTTCTGAAAGTGAATATTTAATTTTGGGAGAGGTTCTGATTTTT TTGGGAGAATTAATTTTTTTAATTTAATTTAATTTGATGATGTGTACTTTTTTATTATTTTTTAAAATTCCACGTAAGCC TCATTTATCCAGTCAGCATGCCTATTCATCACTCGCCGGAGCTCCGGGCTCCGGCGAGGACCTGCTCCAGACTTATTGCA AACGAGAGGACCCAAATTTGCAAATTTTCCGGGGAGGGACTAATTTCAGACGGCGAGACAAAGACAGGGATCAAGTAGAC GATTAACCCTAAAAAAGAAGCAAACGCGAAAATTATATATCAGAGGAACCAATCTGCACGTTTTATATTTAGGCTATAAT ACTAAGAACCTTGACTGTGAAAGTTATGATGTATTAGGTTCATGGAATTGTGTTCACTAGTAATTACAAATATGTCATTT TATCTTTAATTTGTTTCCTATTTTCAAATATTCTGATTCATTTTGCATTTGTTTTCGTCATTTTCTGTACAATTATTTGA AAACGGGAAACAAAAGAAAAGAAAGTGTCATTTTTGTAATTATTGGTCAAAATATGATTTCAAAACTATAAACATTTTCT CAAACACACCCTTCTTATTTTTCTTCATCCTCTCCTTTTCTCAACCAATTTCAACTTTAGCAGCCAGTTTGCTTGACTTC AAAGTACAGATCTAGCCCCTAAAAGCACGGTTGTGCATATTCAACCAAAACACTTACCTTCCTTCCCAATATTACATGAG CTGTTCAAGACCCTTAGTGTGATCTAATTCGGGGTCTTAACACTTACGGTCAGTGCCACGGATCAATGAAAAGTGCTCCT ATGTCTTATTTCCGATTTTGATGTCGTCTTGATGGGCATAACAGTACAACAGAAGAGCTATCAGTTAAATTAAATCTGCA CATCAAAATTTAGATAATTTTTACAAGATTATATTCTGCGTTTTGCTTGATTCTGCAGAAGAAGTTAATTAAGAACTCCT TCCAAAAGGGTATTTGTTTCTGTCAGCGATTCCGGGGCCTAATGAAATTAACTTTTGAGTTTAGGTTCGACAAACCTTTT GTCATTTGTTTCAGTAGTTCATTTCATTTGTACATGGTTTACCTGTGATTTGTTTGTGAATCGTGATAAATATGTGCATT TGAATCAATTCTTATGAGCTTGTTCAGCTGATTTGCAATTTTTTTTGAAGTCTATGGATTATAATTAATATTATAATTTT GTCTTTTCTTCTATGTGCAGTGCGTACAGAGCACTATACATTCTCAACTGGATCTATCGCTACTTCACTGAACCCCACTT TGTCCACTGGATAAGTATGATCTGTCTTTTCATGTGCTTTTTTGGCTATTATTGCTTTATGCTTTGACACTTTAAAAGTT GAAAGGTAATTGGAAGTTTAGGTTATAGGTCATTTACTTCTACAACTGTAAACAAGAAAATTTAAGAAGTTAATGTGTTT CTGGTTACTTTTCTCTCATCACTTGTTCCGAAATAGTACTCCCTCCGTTCCTAAATATAAGACCTAATACAAAAAATTGC GCTTATTAAGATAACATTAAATGTGTTCAATTAGTGTATTGGTTTTTTAAAAATGCATAAATTCCTCCATATTTACCCTT TGTCATTTTCTCTCACTAATTAATGGTAAGTGGTAATCAAAACTTGGGAATTGAAAACATATAATTAATGTGGAGGGTAA AAATGGAAGAGTACAAAACCTTTTGTTAGATTATTGTAACTAGGTCTTATATTTAGGAACTTTAAAATTTTGAAACTAGG TCTTATATTTAGGAACGGAGGGAGTAGCAATTTCTGTTTAGACAACACAACTGCTAAATATTCCTTACAAAGAACCTTTT TTTCCATGAAACTAAACATATAACTGTCAGGGTAGCTAACTAGCTATGATCTAGGTCTAACTGCCTTCCATGACTTGTTG CAACACGTGACAAGAGGAAAACATTGGCCTGATATCTCCTGCCCCCTAAAAAGGCATAATGAAAGTTGCTCTTATGCTGT ATTCTGAAAATGACAGTGTTCTGAAAATTTATTCCTGAGTCATTTTGATATTTTCTTTTGCAGCATGGATTTCTGGCCTA GTTCAAACACTGCTCTATGCTGACTTCTTCTATTACTATTTCCAAAGGTACATTGATATAAGTAGCACTGTAGCAGGTTT TTATTTATGTTAATAATTCTTCTTCATATAAGTTTTGAATTTTTACAAATTGTGCCATGCAGCTGGAAGAACAACCAAAA GCTTCATTTGCCAGCATGAAACCCAAGGTTCTCATTTGGAGAATTTTACAATGAGCAGAGAGGATCCAAACTATTTGTCT GGACACAGTGGTTTCTGAATTACGATTCAATATTTGTTCGTTCTTGCTCCCTCATATACTACTGTACTAATTACTAGGAA TGTTAGACAAAAAATCATGAAATTGTTGGTAACGCTACTCAATGCAATCTTAACTTGAAAAGTTATTGATATCTAGATGA GAGATTGGAGGTACAATGCTTGTTTTGATCCTCGTCCTTTTGTATATCTGTCTGGGGTGAGGTGTTACCAAAGATCTTGC ATGGATCAACGCTTATTCTGCTTTCATGACACAGGAAATAGGTAACTTGGAATGGTTTTCGATGAGCTATAAGTGTGAAT AATTATTTGAATTATTTAGAGAATTTAGCACCGTGAATTACAAATTCATAAACATATGGGTGAGTATTCACTGGGCCCGG GACACCATAGTCAAATGATGATTCATTTGGCTAGGTAAGTCGAAAAAAAGTAGAAAGTAGCAACGAGGAAAACGAACATT AATATAAAATGAAGGAAACAAAACATTACAAGTGAGAAGAGAGGAGAACAGCAAGAGACCCAGAAGAGACAAAGAGGATG CATATTTAATTAATAGGTAGAGGGAGAGGGAAATAATAATGGTAAATGGACAGTCTACAACTCTGCATAATTTGTCCCCT ATCGATTATAGAGA
CDS sequence (LotjaGi1g1v0588200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATTTTCAGGTTATCTGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTCCTCCTCAAGATCCACACCATCAA ATCCTGCGCTGGTGTCTCATTGAAGACTCAAGAACTCTACGCACTTGTTTTTGCTACTCGCTATTTGGATATCTTTACCA GTTATATATCACTATATAATACCACTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTATGGTACATGAGGCAC CACAAGATTGTTCGTAGATCATATGACAAAGATCAAGATACCTTCCGTCATTATTTTCTCATATTGCCCTGTTTTCTGTT GGCTCTACTTCTCAATGAGAAATTCACTTTTAAGGAGGTGATGTGGGCATTCTCCCTGTATTTGGAAGCTGTAGCTATAC TTCCTCAGCTAGTACTGTTGCAGAGAACCAGAAACATTGACAATTTGACAGGACAATATGTCTTTCTTCTTGGTGCGTAC AGAGCACTATACATTCTCAACTGGATCTATCGCTACTTCACTGAACCCCACTTTGTCCACTGGATAACATGGATTTCTGG CCTAGTTCAAACACTGCTCTATGCTGACTTCTTCTATTACTATTTCCAAAGCTGGAAGAACAACCAAAAGCTTCATTTGC CAGCATGA
Protein sequence (LotjaGi1g1v0588200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIFRLSGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTSYISLYNTTMKLIFLGSSFSIVWYMRH HKIVRRSYDKDQDTFRHYFLILPCFLLALLLNEKFTFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAY RALYILNWIYRYFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNQKLHLPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 215 | 215 | 1.5E-136 | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 1 | 215 | 215 | 1.5E-136 | ||
| PRINTS | 4 | 23 | 20 | 1.8E-62 | ||
| Phobius | 13 | 23 | 11 | - | – | |
| Phobius | 24 | 31 | 8 | - | – | |
| Pfam | 28 | 171 | 144 | 1.1E-53 | ||
| PRINTS | 31 | 51 | 21 | 1.8E-62 | ||
| ProSitePatterns | 31 | 48 | 18 | - | ||
| Phobius | 32 | 54 | 23 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| PRINTS | 52 | 68 | 17 | 1.8E-62 | ||
| Phobius | 55 | 77 | 23 | - | – | |
| Phobius | 78 | 97 | 20 | - | – | |
| TMHMM | 94 | 111 | 18 | - | – | |
| Phobius | 98 | 115 | 18 | - | – | |
| Phobius | 116 | 120 | 5 | - | – | |
| TMHMM | 121 | 140 | 20 | - | – | |
| Phobius | 121 | 140 | 20 | - | – | |
| PRINTS | 122 | 142 | 21 | 1.8E-62 | ||
| ProSitePatterns | 128 | 137 | 10 | - | ||
| Phobius | 141 | 151 | 11 | - | – | |
| PRINTS | 144 | 158 | 15 | 1.8E-62 | ||
| Phobius | 152 | 170 | 19 | - | – | |
| TMHMM | 153 | 170 | 18 | - | – | |
| PRINTS | 158 | 176 | 19 | 1.8E-62 | ||
| Phobius | 171 | 181 | 11 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 182 | 202 | 21 | - | – | |
| PRINTS | 187 | 202 | 16 | 1.8E-62 | ||
| Phobius | 203 | 215 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi1g1v0588200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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