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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0588200 |
| Transcript ID | LotjaGi1g1v0588200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein-retaining receptor; TAIR: AT3G25040.1 endoplasmic reticulum retention defective 2B; Swiss-Prot: sp|Q8VWI1|ERD2B_ARATH ER lumen protein-retaining receptor B; TrEMBL-Plants: tr|I3SXL4|I3SXL4_LOTJA ER lumen protein-retaining receptor; Found in the gene: LotjaGi1g1v0588200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112845982..112850167) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACATTTTCAGGTTATCTGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTCCTCCTCAAGATCCACACCATCAA ATCCTGCGCTGGTATCTATCTATCTTCTCTTCTCACCATTCTCTTTCGATTCAATGCATTACTATGCTGTTGTTGCATCA ATTTTAAACAAGTATTTGTAATTCATACTTTAGGTTTCAGTTTAATAGCAAATGCTAAATGCAGTAGGAACCAACTATAT ATACATCGATATCATAGTGTAATTGTAAAAGATTGATTGAGTGTAATTTGGGAATACCATGTGTGTTCAAATTTTGAGCA ACCTTTAGCTGTTTCTGTTTCTCTTTGAGCTGGATATGCTGAATTCCAAAGTTCTATGTTGGTTAAATTTTTGAAAATGA GAGAATCGTGTAGGCGTTGACGGTTATAGACATAGATCAATGAGGAGAACTGTGAGTCTTTAATTTGATTTTTGGGGATA TTTTTCTTACTGACTTTGGGTGCATCTTATTTTTATGCAGGTGTCTCATTGAAGACTCAAGAACTCTACGCACTTGTTTT TGCTACTCGCTATTTGGATATCTTTACCAGTTATATATCACTATATAATACCACTATGAAGTTGATATTCTTGGGAAGCT CATTTTCTATTGTATGGTACATGAGGCACCACAAGATTGTTCGTAGATCATATGACAAAGATCAAGATACCTTCCGTCAT TATTTTCTCATATTGCCCTGTTTTCTGTTGGCTCTACTTCTCAATGAGAAATTCACTTTTAAGGAGGTTAGTATGCACCT GCTATTATCCGTTGTCTGTAAATGTTCTGTTACAATATATTAGACTTATAATGTATTTATTATTGGCTAGATTAGTTACC AGCGGTTAGCAATAGATAGCAGTAACAGAAATCTGTTAGAGAGTTAGATTTCGTCCATGACATACATGATTACATGTCTT TTTGACTATTTTTAGAGCTCATTGTCCATGACTTTAACTTTCATCTACTTTCCAAAATCATACTTATGCATGCAATAGGT GATGTGGGCATTCTCCCTGTATTTGGAAGCTGTAGCTATACTTCCTCAGCTAGTACTGTTGCAGAGAACCAGAAACATTG ACAATTTGACAGGACAATATGTCTTTCTTCTTGGGTAAGCTTTGTTCTTTACCAGATTTTAAGCATTATTATATTTTCCA GGACTTCTGTGATTCTTGTTATTGCATTAGTATTCGAATTAGTACCTATTATGTTCTAAAGGTGTTTCACCTACTGATCA ACAGCCAAATAACTGGAAGATATTATCAATGTTGATATCTATTCCTACATAGAATGATCTCAGTAGTGTTTTCATGTGAG ATGAGATAGGAATGGGAGTTGAAATTTGATATAGTTCCCGGTCATTGAAATCAGTAACACTCTTCAAATATTGGTTGATT TTGTTCTCATAAGAACATCATAGCATTTCATCTGATGAATGGTATAGGTTCCGAAATAGTGCTTCTAACTCACCTAGGCA GAGAGTAGCTGATGCTGATGCATGCGACAAAAGGAATAATAAATTGTTAGTTTGCAGTACTGTCCATGGGCCAAACTGTC CTTTGGCTTCATTAGAAATGCTCAATGAAAATGGCCTTTTATATTATCATGAGTTGGAGTTTAGTATATGCGAAACCTAA GTTCTGACTGATTATAGTCCCCAACTTTTTGCAACACTTAAGGTATGTGTACTCTCATAAAATAGAGGGTTAATCGTCTA CTTGGTCCCTGTCTTTGTCTCGCCGTCTGAAATTAGTCCCTCCCCGGAAAATTTGCAAATCTGGGTCCTCTCGTTTGCAA TAAGTCTGGAGCAGGTCCTCGCCAGAACCCGGAACTCCGGCGAGTGATGAATAGGCATGCTGACTAGATATATGAGGCTG ACGTGTCAAGGAAAAAAAATATAAATCAATTTTATTAATTAAAAGAACCCTAATTAACTAACTTATCCTAATTGGGGCCC AAAACAATTCTCTATTTCTGAAATCCCCCAAATTTTCCAATCATATGACATTAATTTAGGGTTCCTGAATCAATTGCTTC TTCTTCCTCTCAAACTCAGAACCTTCTGAGCATCTTCTCATCTTCTTCTTTCCCTCAATTGCTTCTTCTTCCTCTCAAGC TTGTGCCTGCATGTCCATGCACCATCTCCGCCCGAATCTGCGAATCGTCCTCCATCTATTATATTTTTGGGGGAAAGGTT ACGGGTTTGGGTGTGGTGGGTTGCGAGTGAGGGTGGGGATGGGGGTGAGGTTGCGGGTTGGGGGTGGGTTGCGGGTTGGG GGTGGGGTGGGTTACGAGTAGGGGTGGGGATGGGAGTGGGTTCCAGGTGAAGGTGGGGGTGGGTTAAGAGTGGGGTTGGG TTGCAGGTGAAGGTGGGGATGAGTATCTGGAATGGGTTTCTGGGTGGGGGTGTTTCTTACTCTGTGTCAATTGGTGATGT TGCAGTGAGGTGATGAGGAAGAAAACATGTAAACAGTTGAAGCCACCCATTAGGATAAGTTAATCAAAACCAAAGCAAGA GCCAAGAGATGTTTTATTTAAAAAGTGAATCATCTGGAGGAGAGGAACGAAAAACCAGAGCAAGAGCACATTACAGGAGA GGAAAAATAGAAAGCTAGAAAGTGAATCTTCTTGTGTTTTCTTGTTTGGATCTGCAATTGTGTTTCTGGGATCTGGTTTT GATATTGAAGACCAAGGGATTTTTTTATTTTTATTTTTTTCTGAAAGTGAATATTTAATTTTGGGAGAGGTTCTGATTTT TTTGGGAGAATTAATTTTTTTAATTTAATTTAATTTGATGATGTGTACTTTTTTATTATTTTTTAAAATTCCACGTAAGC CTCATTTATCCAGTCAGCATGCCTATTCATCACTCGCCGGAGCTCCGGGCTCCGGCGAGGACCTGCTCCAGACTTATTGC AAACGAGAGGACCCAAATTTGCAAATTTTCCGGGGAGGGACTAATTTCAGACGGCGAGACAAAGACAGGGATCAAGTAGA CGATTAACCCTAAAAAAGAAGCAAACGCGAAAATTATATATCAGAGGAACCAATCTGCACGTTTTATATTTAGGCTATAA TACTAAGAACCTTGACTGTGAAAGTTATGATGTATTAGGTTCATGGAATTGTGTTCACTAGTAATTACAAATATGTCATT TTATCTTTAATTTGTTTCCTATTTTCAAATATTCTGATTCATTTTGCATTTGTTTTCGTCATTTTCTGTACAATTATTTG AAAACGGGAAACAAAAGAAAAGAAAGTGTCATTTTTGTAATTATTGGTCAAAATATGATTTCAAAACTATAAACATTTTC TCAAACACACCCTTCTTATTTTTCTTCATCCTCTCCTTTTCTCAACCAATTTCAACTTTAGCAGCCAGTTTGCTTGACTT CAAAGTACAGATCTAGCCCCTAAAAGCACGGTTGTGCATATTCAACCAAAACACTTACCTTCCTTCCCAATATTACATGA GCTGTTCAAGACCCTTAGTGTGATCTAATTCGGGGTCTTAACACTTACGGTCAGTGCCACGGATCAATGAAAAGTGCTCC TATGTCTTATTTCCGATTTTGATGTCGTCTTGATGGGCATAACAGTACAACAGAAGAGCTATCAGTTAAATTAAATCTGC ACATCAAAATTTAGATAATTTTTACAAGATTATATTCTGCGTTTTGCTTGATTCTGCAGAAGAAGTTAATTAAGAACTCC TTCCAAAAGGGTATTTGTTTCTGTCAGCGATTCCGGGGCCTAATGAAATTAACTTTTGAGTTTAGGTTCGACAAACCTTT TGTCATTTGTTTCAGTAGTTCATTTCATTTGTACATGGTTTACCTGTGATTTGTTTGTGAATCGTGATAAATATGTGCAT TTGAATCAATTCTTATGAGCTTGTTCAGCTGATTTGCAATTTTTTTTGAAGTCTATGGATTATAATTAATATTATAATTT TGTCTTTTCTTCTATGTGCAGTGCGTACAGAGCACTATACATTCTCAACTGGATCTATCGCTACTTCACTGAACCCCACT TTGTCCACTGGATAAGTATGATCTGTCTTTTCATGTGCTTTTTTGGCTATTATTGCTTTATGCTTTGACACTTTAAAAGT TGAAAGGTAATTGGAAGTTTAGGTTA
CDS sequence (LotjaGi1g1v0588200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATTTTCAGGTTATCTGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTCCTCCTCAAGATCCACACCATCAA ATCCTGCGCTGGTGTCTCATTGAAGACTCAAGAACTCTACGCACTTGTTTTTGCTACTCGCTATTTGGATATCTTTACCA GTTATATATCACTATATAATACCACTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTATGGTACATGAGGCAC CACAAGATTGTTCGTAGATCATATGACAAAGATCAAGATACCTTCCGTCATTATTTTCTCATATTGCCCTGTTTTCTGTT GGCTCTACTTCTCAATGAGAAATTCACTTTTAAGGAGGTGATGTGGGCATTCTCCCTGTATTTGGAAGCTGTAGCTATAC TTCCTCAGCTAGTACTGTTGCAGAGAACCAGAAACATTGACAATTTGACAGGACAATATGTCTTTCTTCTTGGTGCGTAC AGAGCACTATACATTCTCAACTGGATCTATCGCTACTTCACTGAACCCCACTTTGTCCACTGGATAAGTATGATCTGTCT TTTCATGTGCTTTTTTGGCTATTATTGCTTTATGCTTTGA
Protein sequence (LotjaGi1g1v0588200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIFRLSGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTSYISLYNTTMKLIFLGSSFSIVWYMRH HKIVRRSYDKDQDTFRHYFLILPCFLLALLLNEKFTFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAY RALYILNWIYRYFTEPHFVHWISMICLFMCFFGYYCFML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 4.5E-115 | – | |
| PANTHER | 1 | 189 | 189 | 4.5E-115 | ||
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| PRINTS | 4 | 23 | 20 | 4.5E-53 | ||
| Phobius | 13 | 23 | 11 | - | – | |
| Phobius | 24 | 31 | 8 | - | – | |
| Pfam | 28 | 171 | 144 | 9.0E-54 | ||
| ProSitePatterns | 31 | 48 | 18 | - | ||
| PRINTS | 31 | 51 | 21 | 4.5E-53 | ||
| Phobius | 32 | 54 | 23 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| PRINTS | 52 | 68 | 17 | 4.5E-53 | ||
| Phobius | 55 | 77 | 23 | - | – | |
| Phobius | 78 | 97 | 20 | - | – | |
| TMHMM | 94 | 111 | 18 | - | – | |
| Phobius | 98 | 115 | 18 | - | – | |
| Phobius | 116 | 120 | 5 | - | – | |
| Phobius | 121 | 140 | 20 | - | – | |
| TMHMM | 121 | 140 | 20 | - | – | |
| PRINTS | 122 | 142 | 21 | 4.5E-53 | ||
| ProSitePatterns | 128 | 137 | 10 | - | ||
| Phobius | 141 | 151 | 11 | - | – | |
| PRINTS | 144 | 158 | 15 | 4.5E-53 | ||
| Phobius | 152 | 172 | 21 | - | – | |
| TMHMM | 153 | 170 | 18 | - | – | |
| PRINTS | 158 | 176 | 19 | 4.5E-53 | ||
| Phobius | 173 | 177 | 5 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| TMHMM | 180 | 197 | 18 | - | – | |
| Phobius | 198 | 199 | 2 | - | – | |
| Coils | 199 | 199 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi1g1v0588200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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