Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0588400 |
| Transcript ID | LotjaGi1g1v0588400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT3G07120.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4; TrEMBL-Plants: tr|K7MSP8|K7MSP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0588400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112858920..112861526) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGTCCAACCTTCTCTTCACAATCTCCACACTCTCTATGTCTCTTTATCTCTCCTCACCATATTGTCACCGTGGACCA CTCATTGCAATTTGCAAATTCATAGCAGAAGATGAATCCTAGACACAATGCAAGGTGACAACAATTCCAGATGACATTCA ACAACAAAAAAACTGCATCATTTGTTATATGCTTTTTTTTTTCCTCTTATGAGTTATGACCGTGAGCCCCTTAATTACCA CTCCATGATTTGACCATTCCTTCTACTACTATATTCACCGTCTTGTTCTCTTTTTTACTTTCCTCTTTCAGGATTCTTGT TCATATACTTTTTCGCTTTTTTCACAGAAATAAATTAAACAAAGAAAAAGACGTGCTCATATCACACATTGTGACCTCTC AATCTATTCGGGGACCAAAGGTATCCAAGGCTTTCTCTCACTTCTCTTTCTTTTTTGTCTTGCTTTGTGTTCCTTAATAA TGAATGGCCCCCGTCTGAAAATGAAAACCCCTCATGTTTTCTAGGAAAAAGGCAATTTCCCGAGAATAATGTTGATCCAT TGCTTGTTTATCCACCATTAACCCAAAACTTTCATGAGCTCTATTCCTTTTCACCTCTTCGCACCACCCTGGAAAAAATA GCCTTCGTTTCTTTTATTGAGAAAAAAAAAACAATACTCTCCATGTAATTTTGTACATTAGTGGAATTTATAATTTGAAG GTTGTAACTAAATTAATTGTGTGTAACGGAAGGTCGCCGGAGGAAGACGGTTGATGATCAAATGTCAGCTTCGGAGAGCA GCCGAGAGAAGCTAGCGGGCTTGACACTCGACGAAATTTTAGCCAACCAAAAGAGATTAGCCGCCACGCCACTGCCACCG AGCCTACCACCTCCTACCAAGAGCCGAACCCTTCTTGACATTATCAGAGAAGACGAGTCCACCAAAAAAGATCGCAGGTA ACATATAATTTTGTTACATGTAACATATAATTTTGTTACATGTTTTTATTTTTATTTTTTTCCAATCTTTAACACACCAT TTGTTTCAAAAACTATAATTCTCCCTTGAATGTTAACATGTTATGCATTTTTGAATCTTTATTCTCACTCGACACGTGAT GTGATAGCAAAATAAGAGACATAAATAAAATTAGATAAAAAATGGAGTTGAAAAAAAAATGAAGAGGGTAAATGAATAAG GTTGTTCAAAATTTTCATTGTGAAGTTTGGAGTTGCAAAAATTAATATTAGGTAAAGTTTGAGTTAAATTATCACTAATC CTAGATGGATTAATAATATTTTTAACTCTATAGTTTCAAAAAATATATATTCTTAACTCTTTAATTTTAAATATCATTAA TCCATATAAGATTCTTATAATTTAACCCAAACTTTACGTAGTTTCATAAAACTAAAAGTTTTATTTATTTCTTGAGTGCT AAAAATGAAATAATCTGAATTGAATTCGCAGATCTTGGAAAGCATTCAAGGACAAGATTCGTCTGAAGCGCGCTGGCTCC GCTTGGACATCGTCAATTCACATTCCGACTTCTGATGTGCCCATCTCAAACCCAAACTCCAGGAACAACTTTGCCAATCT CGGCCGCCGCGACTCCGTACGATTCCAGACTTACCCGACCGACTACTCGGACATGTCAAATCAGTACAACGCTCACCAAG TAGAAGACCTCGATCCCACAGAGGACTCTGACTCTCCAGCTTCGGCGGCACCGACCACTAGACCCCAGTTCTCCCGCAAA GGATCCACCCGCTACGCCGTCGACCCCTCTTTCGACAACAATGTTGGCGGCGTTAGTCTCCGGCCGCAACTGTCGCGGCG GAACTCCACCAGCGTTCAAACGGAGCCGTTCCGACGAGGGCGGGTGGTGACATTTCGGGACAACATGGATGCTGACGAGG AGGTTGAGGAGTCGTACGACCGCCGCCCAGAAACTGGGCGGGCGTTGTCGGCGAGGGAGGCAGTGGTGGCGCAGGAGGCA GCAGAAGCAGCTGCTGCGGCAGAGGCGGAGGAGGAGGCGGGGAGGGGTCAGGTGACGATGTCGTTGATGGACTTGCTGGA AGAGACTGATAGGGAGATGGGGCTTGAAGGTTCAAGGTATATATTAAGTGATGATGATGAGGAAGATGATGACGAGGAAG GTGGGGTAGATGAGGATGAAGATGTTGTAGGTGGTGGTTCTATGGAGCACACTTGCTGCATTTGCATGGTGAGGCATAAA GGTGCTGCTTTGATGCCTTGTGGTCACACTTTCTGCCGGATGTGTTCGAGGGAGCTTATGGTCAGCAAGGGGAACTGCCC AATCTGCAACAATTTTATTTTAGAGATTCTTGACATTTTCTGATTTTTGTTTTTTATTTTGTGAATTTATGGGTTCACCT TTTGTTTGAGTTGGAACTGATTTTTTGTTTTTAATCTGTTATTTATTTCTCCCTTGTGAATCTTGAGGTGGATGACGATC TTTGGGTTTCTTTTCGTGCACATGATGTTTTTTAGAAAGTATGATTATGTGGATCACTGGCTCAATTCTTATTCTAATTG CGGTTGTATAACTATACCTATTGTAATACTAAAATAATACATGTGCG
CDS sequence (LotjaGi1g1v0588400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCTTCGGAGAGCAGCCGAGAGAAGCTAGCGGGCTTGACACTCGACGAAATTTTAGCCAACCAAAAGAGATTAGC CGCCACGCCACTGCCACCGAGCCTACCACCTCCTACCAAGAGCCGAACCCTTCTTGACATTATCAGAGAAGACGAGTCCA CCAAAAAAGATCGCAGATCTTGGAAAGCATTCAAGGACAAGATTCGTCTGAAGCGCGCTGGCTCCGCTTGGACATCGTCA ATTCACATTCCGACTTCTGATGTGCCCATCTCAAACCCAAACTCCAGGAACAACTTTGCCAATCTCGGCCGCCGCGACTC CGTACGATTCCAGACTTACCCGACCGACTACTCGGACATGTCAAATCAGTACAACGCTCACCAAGTAGAAGACCTCGATC CCACAGAGGACTCTGACTCTCCAGCTTCGGCGGCACCGACCACTAGACCCCAGTTCTCCCGCAAAGGATCCACCCGCTAC GCCGTCGACCCCTCTTTCGACAACAATGTTGGCGGCGTTAGTCTCCGGCCGCAACTGTCGCGGCGGAACTCCACCAGCGT TCAAACGGAGCCGTTCCGACGAGGGCGGGTGGTGACATTTCGGGACAACATGGATGCTGACGAGGAGGTTGAGGAGTCGT ACGACCGCCGCCCAGAAACTGGGCGGGCGTTGTCGGCGAGGGAGGCAGTGGTGGCGCAGGAGGCAGCAGAAGCAGCTGCT GCGGCAGAGGCGGAGGAGGAGGCGGGGAGGGGTCAGGTGACGATGTCGTTGATGGACTTGCTGGAAGAGACTGATAGGGA GATGGGGCTTGAAGGTTCAAGGTATATATTAAGTGATGATGATGAGGAAGATGATGACGAGGAAGGTGGGGTAGATGAGG ATGAAGATGTTGTAGGTGGTGGTTCTATGGAGCACACTTGCTGCATTTGCATGGTGAGGCATAAAGGTGCTGCTTTGATG CCTTGTGGTCACACTTTCTGCCGGATGTGTTCGAGGGAGCTTATGGTCAGCAAGGGGAACTGCCCAATCTGCAACAATTT TATTTTAGAGATTCTTGACATTTTCTGA
Protein sequence (LotjaGi1g1v0588400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASESSREKLAGLTLDEILANQKRLAATPLPPSLPPPTKSRTLLDIIREDESTKKDRRSWKAFKDKIRLKRAGSAWTSS IHIPTSDVPISNPNSRNNFANLGRRDSVRFQTYPTDYSDMSNQYNAHQVEDLDPTEDSDSPASAAPTTRPQFSRKGSTRY AVDPSFDNNVGGVSLRPQLSRRNSTSVQTEPFRRGRVVTFRDNMDADEEVEESYDRRPETGRALSAREAVVAQEAAEAAA AAEAEEEAGRGQVTMSLMDLLEETDREMGLEGSRYILSDDDEEDDDEEGGVDEDEDVVGGGSMEHTCCICMVRHKGAALM PCGHTFCRMCSRELMVSKGNCPICNNFILEILDIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 2.7E-162 | – | |
| PANTHER | 1 | 355 | 355 | 2.7E-162 | – | |
| MobiDBLite | 130 | 194 | 65 | - | – | |
| MobiDBLite | 140 | 155 | 16 | - | – | |
| MobiDBLite | 171 | 192 | 22 | - | – | |
| MobiDBLite | 274 | 298 | 25 | - | – | |
| MobiDBLite | 277 | 297 | 21 | - | – | |
| Gene3D | 280 | 355 | 76 | 7.4E-13 | ||
| Pfam | 304 | 348 | 45 | 1.5E-9 | – | |
| SUPERFAMILY | 306 | 351 | 46 | 8.62E-15 | – | |
| CDD | 307 | 344 | 38 | 4.7071E-10 | – | |
| SMART | 307 | 344 | 38 | 2.1E-5 | ||
| ProSiteProfiles | 307 | 345 | 39 | 11.53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0588400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…