Domain Predictions — View

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cd16449

Source: CDD

Description

RING-HC

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0004400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q8VYZ0\|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr\|I1JJU5\|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400	Domains Coil G3DSA:2.30.280.10 G3DSA:3.30.40.10 IPR001841 IPR001965 IPR003105 IPR011011 IPR013083 IPR015947 IPR017907 IPR019786 IPR027370 IPR036987 PF02182 PF13445 PF13920 PS00518 PS01359 PS50089 PS51015 PTHR14140 PTHR14140:SF34 SM00184 SM00249 SM00466 SSF57850 SSF57903 SSF88697 cd16449 mobidb-lite	30
LotjaGi1g1v0004400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q8VYZ0\|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr\|I1JJU5\|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400	Domains Coil G3DSA:2.30.280.10 G3DSA:3.30.40.10 IPR001841 IPR001965 IPR003105 IPR011011 IPR013083 IPR015947 IPR017907 IPR019786 IPR027370 IPR036987 PF02182 PF13445 PF13920 PS00518 PS01359 PS50089 PS51015 PTHR14140 PTHR14140:SF34 SM00184 SM00249 SM00466 SSF57850 SSF57903 SSF88697 cd16449 mobidb-lite	30
LotjaGi1g1v0586200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp\|Q8LBL5\|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr\|I1KZ98\|I1KZ98_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0586200	Domains G3DSA:3.30.40.10 G3DSA:3.30.60.90 IPR000433 IPR001841 IPR013083 IPR017907 IPR043145 PF00569 PF13920 PS00518 PS50089 PS50135 PTHR15898 PTHR15898:SF14 SM00184 SSF57850 cd16449 mobidb-lite	18
LotjaGi1g1v0588400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein, putative; TAIR: AT3G07120.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q8LA32\|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4; TrEMBL-Plants: tr\|K7MSP8\|K7MSP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0588400	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13920 PS50089 PTHR46629 PTHR46629:SF12 SM00184 SSF57850 cd16449 mobidb-lite	11
LotjaGi1g1v0705900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Breast cancer associated RING 1; TAIR: AT1G04020.1 breast cancer associated RING 1; Swiss-Prot: sp\|F4I443\|BARD1_ARATH BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr\|A0A0B2PNV8\|A0A0B2PNV8_GLYSO Protein BREAST CANCER SUSCEPTIBILITY 1 like; Found in the gene: LotjaGi1g1v0705900	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10190 IPR001357 IPR001841 IPR013083 IPR017907 IPR031099 IPR034732 IPR036420 PF00533 PF13771 PF13920 PF16589 PS00518 PS50089 PS50172 PS51805 PTHR13763 PTHR13763:SF9 SM00184 SM00292 SSF52113 SSF57850 cd16449 cd17720 cd17734 mobidb-lite	27
LotjaGi1g1v0729100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FF61\|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr\|G7L5V8\|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001841 IPR013083 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PS00518 PS50089 PTHR45626 PTHR45626:SF17 SM00184 SSF52540 SSF57850 cd16449 cd18071 mobidb-lite	21
LotjaGi1g1v0729100_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FF61\|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr\|G7L5V8\|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001841 IPR013083 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PS00518 PS50089 PTHR45626 PTHR45626:SF17 SM00184 SSF52540 SSF57850 cd16449 cd18071 mobidb-lite	21
LotjaGi1g1v0729100_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FF61\|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr\|G7L5V8\|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001841 IPR013083 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PS00518 PS50089 PTHR45626 PTHR45626:SF17 SM00184 SSF52540 SSF57850 cd16449 cd18071 mobidb-lite	21
LotjaGi3g1v0081200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp\|Q8LBL5\|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr\|A0A151SEQ5\|A0A151SEQ5_CAJCA E3 ubiquitin-protein ligase PRT1; Found in the gene: LotjaGi3g1v0081200	Domains G3DSA:3.30.40.10 G3DSA:3.30.60.90 IPR000433 IPR001841 IPR013083 IPR017907 IPR027370 IPR043145 PF00569 PF13445 PF13920 PS00518 PS50089 PS50135 PTHR15898 PTHR15898:SF14 SM00184 SM00291 SSF57850 cd16449 mobidb-lite	21
LotjaGi3g1v0083200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G13100.3 RING/U-box superfamily protein; Swiss-Prot: sp\|Q6FPI4\|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18; TrEMBL-Plants: tr\|I1MME7\|I1MME7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0083200	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13920 PS50089 PTHR46629 PTHR46629:SF15 SM00184 SSF57850 cd16449 mobidb-lite	11
LotjaGi3g1v0172500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr\|A0A072VAY9\|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 PF00176 PF00271 PF08797 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd16449 cd18008 cd18793 mobidb-lite	29
LotjaGi3g1v0172500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr\|A0A072VAY9\|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 PF00176 PF00271 PF08797 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd16449 cd18008 cd18793 mobidb-lite	29
LotjaGi3g1v0515100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT1G65430.1 IBR domain-containing protein; Swiss-Prot: sp\|Q8W468\|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8; TrEMBL-Plants: tr\|A0A0B2RE25\|A0A0B2RE25_GLYSO Putative E3 ubiquitin-protein ligase ARI7; Found in the gene: LotjaGi3g1v0515100	Domains G3DSA:1.20.120.1750 IPR002867 IPR031127 PF01485 PS51873 PTHR11685 PTHR11685:SF245 SM00647 SSF57850 cd16449	10
LotjaGi4g1v0010400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G03965.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q24306\|DIAP1_DROME Death-associated inhibitor of apoptosis 1; TrEMBL-Plants: tr\|G7JKF7\|G7JKF7_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi4g1v0010400	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13920 PS50089 PTHR46629 PTHR46629:SF8 SM00184 SSF57850 cd16449 mobidb-lite	11
LotjaGi4g1v0278600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q8VYZ0\|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr\|I1LNN5\|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600	Domains G3DSA:2.30.280.10 G3DSA:3.30.40.10 IPR001841 IPR001965 IPR003105 IPR011011 IPR013083 IPR015947 IPR017907 IPR018957 IPR019786 IPR019787 IPR027370 IPR036987 PF00097 PF02182 PF13445 PS00518 PS01359 PS50016 PS50089 PS51015 PTHR14140 PTHR14140:SF34 SM00184 SM00249 SM00466 SSF57850 SSF57903 SSF88697 cd16449 mobidb-lite	32
LotjaGi6g1v0289100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G03965.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q8LA32\|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4; TrEMBL-Plants: tr\|Q2HTH7\|Q2HTH7_MEDTR Zinc finger, RING-type; Found in the gene: LotjaGi6g1v0289100	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13920 PS50089 PTHR46629 PTHR46629:SF14 SM00184 SSF57850 cd16449	10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16449	CDD	1	6.25