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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0588900 |
| Transcript ID | LotjaGi1g1v0588900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G06143.1 basic helix loop helix DNA-binding superfamily protein; Swiss-Prot: sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06143; TrEMBL-Plants: tr|I1KZ54|I1KZ54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0588900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112935685..112939138) extracted from Lotus japonicus Gifu genome v1.2.
GTAACATGGTCTATAGCTGCCAACTGGGTGTCCATTAGAAGAGGTGCCAACTGAGTGTTCATTAGAAGAGGTTTGGAAAT AACCAAAACGAAGTAGGCCCAAATGAGTGACAAAAAAAATGTGTACATGAACAAAGCAATAGAACTTTCAGAATCTCTCT CCCTTCTCCCATATATGCATTATTGATGCTTAACTTTCAACACTGCAAAATTCACACTCTCAAGGACAAAATCCTAGACC AGATAAAACGATGCTCCAAGAGGGAGAAGAAAACACTAGAATCCGTCTACGCCAACATGATCAAAACCAACGCCAACCAA GATTCCTTCTTGATGAACCAATTCATAGCCGCATGCACAACCATAAATCTCGCAACTCATGCATTTTCCCACATGGATAA CCCCAACGCTCTCGTTTACAACGCACTCCTCAGAACCTGCGTCCATTGCCATCGCTCTCACCAAGCATTAGCATGTTACG TGAAGATGCTCAGAAACGGCGTCGTCCCTACCAGCTACTCGTTTTCGTCTTTGGTTAAGGCTTGCACCCTGTTAATGGAT TCAGCTGCGGGTAAAACCGTTCATGGGCACGTGTGGAAACGCGGGTTTGATGCCCATGTGTTTGTTCAGACCACTCTGGT TGAGTTTTATTCGATGTTGGGTCTCGCGGGTGATGCGAGGAAGGTGTTTGATGAAATGCCTGAGAGGGACGCGTTTGCTT GGACGACCATGATTTCTGCGCATGTGCGGTGTGGTGAGGTTGACTCCGCGGCGAGGCTGTTTGATGAAATGCCTGAGAGA AACAGCGCTACGTGGAACGCGATGATTGATGGGTATGCTAAATCGGGGAACATCGAGTGTGCTGAGATTTTGTTTAACCG AATGCCGTGTAAGGATGTTATCTCGTGGACTACCCTGATGACTTGTTATTCAAGAAACAAGAGATTTGGTGATGTGGTGA CGCTTTTTCATGAAATGGTTAGCAGAGGATTGGCGCCTGATGAGGTGGCCATGACCACTGTGATTTCAGCTTGTGCACAT CTAGGGGCGCTTGGGTTAGGAAAGGAGGTGCACCATTATCTGATGGTGAATGGGTTTGGTCTTGATGTTTATATTGGGTC CTCGCTGATTGATATGTATGCCAAATGTGGGAGCATAGATAGGTCCCTTCTGGTGTTCTACAAGTTGCAAGTGAAGAACC TCTTTTGTTGGAATTCTATGATCGATGGGCTTGCCACGCATGGGTATGCAAAAGAAGCATTGAAGATGTTTAGTGAAATG GAGAGGAAAGGAATCAGGCCAAATGGGGTTACATTTGTTAGTGTTTTAACGGCTTGCACCCATGCAGGGTTTGTAGAAGA GGGTCGGTCCAGGTTTGTGAGTATGATTGAGGATTATTGTATTAGTCCTGGAATCGAACATTATGGATGCATGGTTGATC TACTGAGCAAGGGTGGTTTGATTGAAGATGCTTTGGAGATGATCAGGGGCATGACATTTGAACCAAACTCTTTTATTTGG GGGGCTTTGTTGAGTGGGTGTAAACTTCACAGGAACTTGGAAATAGCTAATGTTGCTGTTCAGAATCTGATGATTTTGGA GCCAAGTAATAGTGGGTATTACAGTCTCCTTGTTAATATGTATGCTGAAGTGAATAGGTGGAAAGAGGTTTCAAAGATCC GGATTGCTATGAAGGATTTGGGTGTGGAAAAGACTTGTCCTGGCTCTAGCTGGGTTGAAATCAATCAGAAAATTCATCTA TTTGCAGCTTCTGATAATTATCACACATCTTATGGTCATGTTAACTTGTTGCTATCTGAACTGGATCAGCAGTTGAGATT AGCTGGCTATGTCCCTGAACTGGGGTCTATTTTATAATGACTTTGGCTCTTCAAGTAGGAGGAACCTGAAAAAAGGACGG TTGTAATATAAATTGTGTACAGCCAAACAGTTGAAGGCAAGCCTTGAAATTTTGCAGGGTAAGCTCAGAAAATTGCTTAA CCTCCTTTATTCACCGAGTGTCCGTTGCTAGCCACCATTGCTTGATCTCTCATCTCTTATGTTCCCATAAAATCTAATTC CTCATCTAACCATCAGCAATAAGTGTGCAACCCATGCTATTTAGTGGCAAAGGTATAGGAGATAAAGATGCTTGATGTTA AACTACGCGTCACAAGGATGCTAGGAATTTTATAAACTCAAGCTAAAAAATATACTGTTCTAAGATCTAAAATTAACAAT AAACTTCCCTTCGATGCAAATCAATATACATTAACAATTAATCTCTTTGGATTATGCAAACTGGTCAAGTAATTTTGTAT GCGGTACTGTCTGATGTTATCATATGTTTTAGATACTTTCACAAAGCTTACCATCTATGTCCAATTGTTTTAGCAAGTGG GTAATGATTAATGACAACAACAGACAAATCCAAAGTCTCTGATGATGCACGAGAGGAGTATTTGGTTTTCTGTCCTCAGG AACCCAGGTACGCTCTTCTGCACTGCATGTTGCTTATGTGTTACAACATATTCGCAGTTTGATTGATGATTTGCTTGCTC TTAAACTGTCACTGTAATAGCAATAATATTGAAAAGCTGAAGAGAAATAATTTCTTGGGCTTCTGAGTTCACAAGTGCAA AGCAGGTCACACTTCATCATTTTTCTTTGACATCACTATGTATTCTAACCAAAACAAAGGTATAGAATCTGATATATCAT GCACTAAATTTTAAATCCGAAATAATGTGTCTTTTATTTGGAGGGGGGAGATTAGCTGCTTGAAATTATTTGTGGTGAGC TACAGTGCAAACCGTCAATCATGCCCTTGACTACTTGACTAGGACACGCGTTCACCTGTTTAATGTTTATATACTTTTTA GGTGGCTACTGACAAATTATTGGGATCCTAAATCTTTCAAATCATAGAATTCCATGATGAGTTCAAATCTAACTCCTTAA ATTCAAGGTTCGAGTTTAAGTTTGCTAAGCAAGAAAGGTTTTTAAGCGGAGGGATGTGGGTTGAAAAGAGTTAAAAGTTG AGCACTATTACCAGGAAAAAAGGGTATTGATTAATATGTCATTGGAGTTCTGGAAGTCGAATGCATCATTGTAAAATGGA AAGTTTAGAGCTCGGGAAATAGTTAAATTCTTTATTATTGTCCTTGTAAATGCACATGTCTATATTTTCCCATTATCCTG GCTATTTTAGGTTTGATTGGAGGGAGAAGTTCTTTCAGTTTTTGTTATACTACCTGTTTGTTTTTTCTGTTGCTAGAAGA TTACCGATGGTTTTCTTTATTATTGATTGTTCTTTTATATGCGTATGTATATATTTTCTTATAATGTATATGGACATGTA AAATCACGGTACAACTACAACATTCTGTTTACACAAAATTTTGGTAAACACAAATAAATAAAGAATCCAAAGATCAATCT GGGACTGATTCGAG
CDS sequence (LotjaGi1g1v0588900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAACTTTCAACACTGCAAAATTCACACTCTCAAGGACAAAATCCTAGACCAGATAAAACGATGCTCCAAGAGGGA GAAGAAAACACTAGAATCCGTCTACGCCAACATGATCAAAACCAACGCCAACCAAGATTCCTTCTTGATGAACCAATTCA TAGCCGCATGCACAACCATAAATCTCGCAACTCATGCATTTTCCCACATGGATAACCCCAACGCTCTCGTTTACAACGCA CTCCTCAGAACCTGCGTCCATTGCCATCGCTCTCACCAAGCATTAGCATGTTACGTGAAGATGCTCAGAAACGGCGTCGT CCCTACCAGCTACTCGTTTTCGTCTTTGGTTAAGGCTTGCACCCTGTTAATGGATTCAGCTGCGGGTAAAACCGTTCATG GGCACGTGTGGAAACGCGGGTTTGATGCCCATGTGTTTGTTCAGACCACTCTGGTTGAGTTTTATTCGATGTTGGGTCTC GCGGGTGATGCGAGGAAGGTGTTTGATGAAATGCCTGAGAGGGACGCGTTTGCTTGGACGACCATGATTTCTGCGCATGT GCGGTGTGGTGAGGTTGACTCCGCGGCGAGGCTGTTTGATGAAATGCCTGAGAGAAACAGCGCTACGTGGAACGCGATGA TTGATGGGTATGCTAAATCGGGGAACATCGAGTGTGCTGAGATTTTGTTTAACCGAATGCCGTGTAAGGATGTTATCTCG TGGACTACCCTGATGACTTGTTATTCAAGAAACAAGAGATTTGGTGATGTGGTGACGCTTTTTCATGAAATGGTTAGCAG AGGATTGGCGCCTGATGAGGTGGCCATGACCACTGTGATTTCAGCTTGTGCACATCTAGGGGCGCTTGGGTTAGGAAAGG AGGTGCACCATTATCTGATGGTGAATGGGTTTGGTCTTGATGTTTATATTGGGTCCTCGCTGATTGATATGTATGCCAAA TGTGGGAGCATAGATAGGTCCCTTCTGGTGTTCTACAAGTTGCAAGTGAAGAACCTCTTTTGTTGGAATTCTATGATCGA TGGGCTTGCCACGCATGGGTATGCAAAAGAAGCATTGAAGATGTTTAGTGAAATGGAGAGGAAAGGAATCAGGCCAAATG GGGTTACATTTGTTAGTGTTTTAACGGCTTGCACCCATGCAGGGTTTGTAGAAGAGGGTCGGTCCAGGTTTGTGAGTATG ATTGAGGATTATTGTATTAGTCCTGGAATCGAACATTATGGATGCATGGTTGATCTACTGAGCAAGGGTGGTTTGATTGA AGATGCTTTGGAGATGATCAGGGGCATGACATTTGAACCAAACTCTTTTATTTGGGGGGCTTTGTTGAGTGGGTGTAAAC TTCACAGGAACTTGGAAATAGCTAATGTTGCTGTTCAGAATCTGATGATTTTGGAGCCAAGTAATAGTGGGTATTACAGT CTCCTTGTTAATATGTATGCTGAAGTGAATAGGTGGAAAGAGGTTTCAAAGATCCGGATTGCTATGAAGGATTTGGGTGT GGAAAAGACTTGTCCTGGCTCTAGCTGGGTTGAAATCAATCAGAAAATTCATCTATTTGCAGCTTCTGATAATTATCACA CATCTTATGGTCATGTTAACTTGTTGCTATCTGAACTGGATCAGCAGTTGAGATTAGCTGGCTATGTCCCTGAACTGGGG TCTATTTTATAA
Protein sequence (LotjaGi1g1v0588900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNFQHCKIHTLKDKILDQIKRCSKREKKTLESVYANMIKTNANQDSFLMNQFIAACTTINLATHAFSHMDNPNALVYNA LLRTCVHCHRSHQALACYVKMLRNGVVPTSYSFSSLVKACTLLMDSAAGKTVHGHVWKRGFDAHVFVQTTLVEFYSMLGL AGDARKVFDEMPERDAFAWTTMISAHVRCGEVDSAARLFDEMPERNSATWNAMIDGYAKSGNIECAEILFNRMPCKDVIS WTTLMTCYSRNKRFGDVVTLFHEMVSRGLAPDEVAMTTVISACAHLGALGLGKEVHHYLMVNGFGLDVYIGSSLIDMYAK CGSIDRSLLVFYKLQVKNLFCWNSMIDGLATHGYAKEALKMFSEMERKGIRPNGVTFVSVLTACTHAGFVEEGRSRFVSM IEDYCISPGIEHYGCMVDLLSKGGLIEDALEMIRGMTFEPNSFIWGALLSGCKLHRNLEIANVAVQNLMILEPSNSGYYS LLVNMYAEVNRWKEVSKIRIAMKDLGVEKTCPGSSWVEINQKIHLFAASDNYHTSYGHVNLLLSELDQQLRLAGYVPELG SIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 173 | 154 | 4.8E-20 | ||
| Pfam | 73 | 120 | 48 | 3.3E-9 | ||
| ProSiteProfiles | 74 | 108 | 35 | 10.161 | ||
| TIGRFAM | 77 | 109 | 33 | 3.2E-5 | ||
| ProSiteProfiles | 109 | 143 | 35 | 5.382 | ||
| PANTHER | 112 | 209 | 98 | 1.0E-92 | – | |
| ProSiteProfiles | 144 | 174 | 31 | 6.785 | ||
| Pfam | 149 | 174 | 26 | 0.33 | ||
| Gene3D | 174 | 235 | 62 | 6.5E-12 | ||
| ProSiteProfiles | 175 | 209 | 35 | 11.137 | ||
| Pfam | 178 | 206 | 29 | 4.6E-7 | ||
| TIGRFAM | 178 | 206 | 29 | 2.3E-6 | ||
| TIGRFAM | 209 | 236 | 28 | 1.5E-5 | ||
| PANTHER | 210 | 294 | 85 | 1.0E-92 | – | |
| ProSiteProfiles | 210 | 236 | 27 | 6.807 | ||
| Pfam | 236 | 284 | 49 | 3.7E-11 | ||
| Gene3D | 236 | 337 | 102 | 3.2E-21 | ||
| ProSiteProfiles | 237 | 271 | 35 | 12.145 | ||
| TIGRFAM | 239 | 273 | 35 | 1.4E-9 | ||
| ProSiteProfiles | 272 | 306 | 35 | 7.037 | ||
| PANTHER | 291 | 512 | 222 | 1.0E-92 | – | |
| ProSiteProfiles | 307 | 337 | 31 | 6.774 | ||
| Pfam | 337 | 384 | 48 | 1.0E-13 | ||
| ProSiteProfiles | 338 | 372 | 35 | 13.241 | ||
| Gene3D | 338 | 531 | 194 | 6.4E-31 | ||
| TIGRFAM | 340 | 373 | 34 | 1.1E-8 | ||
| ProSiteProfiles | 373 | 407 | 35 | 7.059 | ||
| ProSiteProfiles | 409 | 439 | 31 | 6.577 | ||
| Pfam | 412 | 436 | 25 | 0.085 | ||
| ProSiteProfiles | 475 | 509 | 35 | 7.914 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0588900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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