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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0591700 |
| Transcript ID | LotjaGi1g1v0591700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113161748..113167086) extracted from Lotus japonicus Gifu genome v1.2.
AATAGTGGTGTGACACACAACACACAACACACAACACACACACTATAGAATAGAGTATAGAGGATTCTCCCTCCCGCATT GTTTGTCCATTGTATAAAAACCCGCTCGAATTCCCAGCGTGTTATTCATTTTTCACTTTAAATCGTGCAGGAGTGTTCTT TCTCACTCCTCTCTCTGCGAGATCCACAACCCCCCAAACCCTAGCAAACCCCTTCCGCAGAGGGAGCCTGAGAAAGAAGA ACAACACCCGATCCACTCTCTCTTTCTGGTAAACCCTCTCTCTTCTAGTTTTCTCCCTCAAATTTCATTTTTCAATTTCT TTTTTCGGAATGTGCTTTCGTTTGAGTTGTTCTGGGTTTTGCTTGAACGTCGAAATTCTGGGTGCATACTGTGTTACCGT ACTAGTTCTTGGATCAGGTAGTTTCTGAAGAACGCTTAGGATGCCTTTTTGAGAAACGATCTTTTATTTTTTTTGGGGAG ATTAGGAATTATTTTACTTCATAAGTTAATAAAATGAAATTAGAGCTAATTTTTTATTCAAATATTTGTTTAAGTGTAAA TTATGCCTGGGAACAACCCATAAATTTTGCTAACCCTAGTGTATTTTTTTTGGAGATGCTCTGGTTTTCGTTGGGTAATT TCGTGTTCGTTTAATGTTTAATGTTTTAATATAGTAAGTATGTGTATCGATTGTGATGCTGAGTTGGTGGTTTTAATTGG CAGTTGGGTTAGCTTTTGGAAACCGGTACAATGGCATCTTCGGAGCAGCAAGCTACTGTGAAAACTCCTGCCGCAGATAT CGTATGTATATCTACATTTTGTCGTGCATGATTGATACCACCTGCTCGCTGTTCATCTTTCGATTGACGCGTTTTGAATG AAACTGTAATGTAGGTTGGCAATGCCTTTGTTGATCAGTACTACCATATGTTGCATGAAAGCCCTGAGCTGGTGCATAGG TTTTACCAGGAAGTCAGTAAGCTTGGCCGTCCTGAACAAAATGGTCTAATGGGGATTACAACTACAATGCTTGTGAGTTC TCTCTCTCTCTCACACGCACACACGCATCCTTTCCTGTGCATTTAACTTGCTTCTTGTTTATAATGTGCATTACTGATAT TCTATCTCTGTTGGGTTTAATGATTTCATTTGATGTTTGATCAATTAGTATCATGTGCGTACATTTAACACTTGTGGCTC GTAGTTCAATCCCTTTATGGTATTACTGTAATCCCCCCTCCCCCCTTCAAAATCTCTAAGATTGCATTGTTAGAACTTAG AACCTGACCAGAAACTGTCTGGCTCTAATTAGTTGCTGATGCCTCTTCCTTTCTTTCCCTCTATTTTTGCTCTATATCTA TTATCTGATCTATAGTCCATTTATTAACTCAGTTTTAATACTAATATGCATAAAATATTGTGAAGGCTTGAGCTCAATAG TGATGAAATTAATATTTTCTCTATGCATTGTTTTGAAATTTTATCATGCAGGATATCAACAAGAAGATACTCTCATTGGG TTATGATGAACTCAGTGCAGAGATCATATCTGTTGACGCACAAGAATCTTATGGTGGGGGAGTCCTTGTCTTGGTCACTG GGTTTATGATAGGCAAGGATGCCATCAAGAAGAAGTTTACACAATGTTTCTTTCTAGCTCCACAAGAGAAAGGATACTTT GTATTGAATGATGTTTTCAGATATGTTGATGCAAATGGAATCGAAGGGTCTGCTCACGACATTGGATCTCCTGTCCCCCC TGACAATGGTAATGCATTTCTATTCAATTTAAGCTTTTTGGTTTCCTTTGGCTTCCCTTTAAGATGCGGTTGTTTACAAC CTCCTTTCAGCGGCAGATCCTTCTGTGCTGGAGACACAAGTTTCCGAGGAAATACCTTTGGCTGCTGAGGATGGTGATGT AGAGGAAGTCTACAATCCAGAAAATGGGCAAGCTTCAATTGAAGAGGAGGAAGCTCCTGTACCTGAGGTTCTTGATGAAA TTCCTGATGATTCACAGGTGGTAGCTGGATTGGCATCGCCAGTTGACGGAGCACCAAAGAAGTCATATGCCTATATTGTT AGTTTCCATTCTTAGATACTCTGTACCTTTCTAGTAGTTTATAAGGTCATATTGAATTTCCATTGGAAATGCATCTTTAT AATCTTTGTTTGAAAAAATAGGGAGTGGAATGCTAAAAATTGACCAGAATGATACTTCAAATTTCCTTTTTATCTGGATG AGTAATAATAACTTTTGGTACTGGTTGTTTTCCTTTCTAACTGGTGAAATTTTTAAGGTTAAGGTCATGAAAGAGGTTAC AACACCATCTTCCACAGTGACCGCTGTTCCTGTGAAATCTGCCATTAAGAGCCAAGAACAGCAGGGTACTGCTGCACCTC CACCATCCAGCATGCCAGAAAGCAATGCTCCTGGTATAATTACTAATGAAGATGGAAACAATCAAGAAACTGAAGGTATG TTGCTCATATTCACAACCTATTGTTTTTGGAGTTGATTTTCTATAATTTTTTTACTGAGTTGTATTGTCACGTTCATTTG CTTTTGAACAGCTGAGGGATATTCTATTTATGTGAAAAGTCTGCCAGCTAACGCTACACCTTCTCTTCTGGAGACCGAGT TCAAGAAGTTTGGACCTATTAAGAGTGGTGGTATCCAAGTTAGGACTCAAAAGGTATTTTACTTGTTAAGTCTCTGCCTT TTTAAATCAGCAGTTAGCTAATTTATATATTTATTTCATTTGTTTGTTTTGCATGTTAATGGATTGAGCAGGGATTTTCC TTTGGCTTTGTTGAGTTTGAAGTGGCAAGTGCTGTGCATAGTGCACTGGAGGTATTTGTCAAATTTTATTTTCATAGTTC ATCCTTGTCTGATATATGAGAAAAAATTTCTAATCCAAAATTGAAGGGGAGAAATAAAGAAATACCCGCCACCCGCCGAG TCTTGGACTACTATAACTGTCATTGTACCATCAATGACCCAAGTAACTGCCATGTCTGCAACACTATGCTTGTGTGATAG CAGCTTTCTCAAACTCCTTATGGAAGCTCTATGATGATGCCGGCTCTATCTTATGTTTGCACACCCTGCTTACGTTTTTC TTGTTAATTTCCCATATTTGTCTCTGAAATGATTCTTAGATTTAAGTTGTCAACTATGTAATGATTCCAAATATATATTA ACAATTTGCAGATTATGTTCAATTTTACTGTGTACTTAGGCATATGTAGCAACTTGTGCACTGAAATGATGTTTGTTGAT GAATATGATGGGGGTATACTCATGCTTGTAAATCTTATCTACTCATTTGCATGGGAAGTTTGTTAAAGCAAATGAAGAAA GCTTCTACTCCACTAAGTGTGCTGTGCTCATTGAGTTTGATTCTATTTTCATGTGTTGATGCTATAAGTTTTACAATGTT CATTACTACTGGATTGTGCTCGTCTTGAAGACTTAGTGTATTGAATTTTCCTTTTGTTTTTTCTTTCAAGCTTTCTATTC TGTATGCAATTTTCTAACTTTTGTCGAGGTCTATTATTGCTGTTGATATTTGTGCTCATATATTTGTGGCAATATTTTGT AATCAATATTTTTCTTTTCATTTCAGGCGTCACCAATCTTGATCAATGGCCGCCAAGTTATTGTGGAGGAAAAGAGATCA ACTAATCGAGGCAAGTGCTTTTTATTATTTAATTTGGTCCAATTCACATGGAGTTGCGAGTCTGGAGTTTCTGCATCTGA TAACACTGAAATTTTTCTGTATTCATCTACTAAAGCACATTTGCATGAACTTATTTGCATTGAATGATTAAGTAATTTCA TACCGCATTTGGCATCCATTCAAGCATGATATATGCAATTGAATTGAAGCATGTTGATTAAATTATTTTTCACCTCATAA GGTAACCTTTGTGGACATTTATGGGGATGATAAATTCAATGAAATGTGTTTTATGTTGTGTTTATTTTTCTTTTACTCAA GGGCTAGCAACATATGTTGACTGTTGAGTATTTAAACGTAATTATTTCGTTGCTTGAGGAATGCCTATGGTTAATCAAAA GCTACAAAACTAATCCTTAATTTTTCAATTCCTTGCTGTCTTCTTTATGGCAAGAACTATCCAGCACGATATTTAGCTTG TGAAGGAGAAGTTAAAAATTTATTAATACAATTTTTGTATTAAGTCATACAGTTCTCATATCTCAGCTACAAAGGAAGCA TATTGTTATATAATTTTTTTATTGAACATGAGTTTTAGTTTTCAACTATTTTGTGAGTATTTCATATACTTTTGTGGGGT TACTCGAGACTTAATCACATGAAATTTGTGTACAATTTGCCTTGCATTTTCCTAGAAAATTTTAGTCTCCTTTTGATCTG AAAGTTGGTTTCTGTTTATGTTATTGGTCACGTTGCATTTAGAACTTAACTGTTACGCGTTCTCTGTTCAGGTAGGGGAC GATTCTCATCCGGAAGAGCACCAGTTTACAGGGCTGAAGGAGGTTACAGGGGTGAAGGTGGTTTCAGGGGTGAAGGAGGG TACAGGGGTGAAGGAGGTTACAGGGGTGATGGAGCCAGAGGACGTGGAAACTATGGAAATGGCCGAAGCTATGGCCGTGG TGATTTTAATGGCTGGGGGGAATTTGGCTTAAGGAATGGCCCTCGAGGAGGTTTTTCTAGCCGTGGAGGTGATGGGTATC AGAGAAGTGAGGGAGCTGGCGCTGGCCGCATGAATCGCGTGCCTGCTGTTAATGCTGTTAATTCAACGGCCAAAAGTACA GCTGTTCGTGTGCCTGCGTCTGCTTGAGGAACTATTCTTCATTGAGGCAGTCAGACTAATAGAAAATGTGGTTCAATTTG CAGTAATTGAGGCAGTTAGAAAGATTTAAGAGGAGCCTTTTTTTTTGAAAAGTTTATAAGGTTCTAATTTTTTTGTCGTC CTTTTGATATTAGTAGTCTTGGTAAAGGTAGTTTTCCAATTTATGTTCATTATAATGTCATTCTAGGTAGTTTATGTGCT TCCCCATCTTTTATGAATATAAATTCATATATTTTTTCAAATTGAATTGGTAGTTCTAACATGAGGTTGCTATTAGCATG ATTTACGGAAATGATTTTGTAGAACTAGAGTTAAGTATTACTCTCGAGAAATGATTTTTCTACCACATTTTCAGCTATTA TTGGTTATATTGGTTAATAAAATTAAAAACAACTAATAAATACCTGTCGCCCAGCCTTTTTATGTAAGCTATTATACTAC AATTTACATTTGTTGATTTGTCTCGTGTCATGTATCATGACCCTTCTCTTTAATAAAAC
CDS sequence (LotjaGi1g1v0591700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTCGGAGCAGCAAGCTACTGTGAAAACTCCTGCCGCAGATATCGTTGGCAATGCCTTTGTTGATCAGTACTA CCATATGTTGCATGAAAGCCCTGAGCTGGTGCATAGGTTTTACCAGGAAGTCAGTAAGCTTGGCCGTCCTGAACAAAATG GTCTAATGGGGATTACAACTACAATGCTTGATATCAACAAGAAGATACTCTCATTGGGTTATGATGAACTCAGTGCAGAG ATCATATCTGTTGACGCACAAGAATCTTATGGTGGGGGAGTCCTTGTCTTGGTCACTGGGTTTATGATAGGCAAGGATGC CATCAAGAAGAAGTTTACACAATGTTTCTTTCTAGCTCCACAAGAGAAAGGATACTTTGTATTGAATGATGTTTTCAGAT ATGTTGATGCAAATGGAATCGAAGGGTCTGCTCACGACATTGGATCTCCTGTCCCCCCTGACAATGCGGCAGATCCTTCT GTGCTGGAGACACAAGTTTCCGAGGAAATACCTTTGGCTGCTGAGGATGGTGATGTAGAGGAAGTCTACAATCCAGAAAA TGGGCAAGCTTCAATTGAAGAGGAGGAAGCTCCTGTACCTGAGGTTCTTGATGAAATTCCTGATGATTCACAGGTGGTAG CTGGATTGGCATCGCCAGTTGACGGAGCACCAAAGAAGTCATATGCCTATATTGTTAAGGTCATGAAAGAGGTTACAACA CCATCTTCCACAGTGACCGCTGTTCCTGTGAAATCTGCCATTAAGAGCCAAGAACAGCAGGGTACTGCTGCACCTCCACC ATCCAGCATGCCAGAAAGCAATGCTCCTGGTATAATTACTAATGAAGATGGAAACAATCAAGAAACTGAAGCTGAGGGAT ATTCTATTTATGTGAAAAGTCTGCCAGCTAACGCTACACCTTCTCTTCTGGAGACCGAGTTCAAGAAGTTTGGACCTATT AAGAGTGGTGGTATCCAAGTTAGGACTCAAAAGGGATTTTCCTTTGGCTTTGTTGAGTTTGAAGTGGCAAGTGCTGTGCA TAGTGCACTGGAGGCGTCACCAATCTTGATCAATGGCCGCCAAGTTATTGTGGAGGAAAAGAGATCAACTAATCGAGGCA AGGGACGATTCTCATCCGGAAGAGCACCAGTTTACAGGGCTGAAGGAGGTTACAGGGGTGATGGAGCCAGAGGACGTGGA AACTATGGAAATGGCCGAAGCTATGGCCGTGGTGATTTTAATGGCTGGGGGGAATTTGGCTTAAGGAATGGCCCTCGAGG AGGTTTTTCTAGCCGTGGAGGTGATGGGTATCAGAGAAGTGAGGGAGCTGGCGCTGGCCGCATGAATCGCGTGCCTGCTG TTAATGCTGTTAATTCAACGGCCAAAAGTACAGCTGTTCGTGTGCCTGCGTCTGCTTGA
Protein sequence (LotjaGi1g1v0591700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSEQQATVKTPAADIVGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDINKKILSLGYDELSAE IISVDAQESYGGGVLVLVTGFMIGKDAIKKKFTQCFFLAPQEKGYFVLNDVFRYVDANGIEGSAHDIGSPVPPDNAADPS VLETQVSEEIPLAAEDGDVEEVYNPENGQASIEEEEAPVPEVLDEIPDDSQVVAGLASPVDGAPKKSYAYIVKVMKEVTT PSSTVTAVPVKSAIKSQEQQGTAAPPPSSMPESNAPGIITNEDGNNQETEAEGYSIYVKSLPANATPSLLETEFKKFGPI KSGGIQVRTQKGFSFGFVEFEVASAVHSALEASPILINGRQVIVEEKRSTNRGKGRFSSGRAPVYRAEGGYRGDGARGRG NYGNGRSYGRGDFNGWGEFGLRNGPRGGFSSRGGDGYQRSEGAGAGRMNRVPAVNAVNSTAKSTAVRVPASA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 138 | 133 | 9.0E-33 | – | |
| PANTHER | 9 | 466 | 458 | 1.6E-141 | ||
| PANTHER | 9 | 466 | 458 | 1.6E-141 | – | |
| CDD | 15 | 136 | 122 | 2.38169E-43 | ||
| SUPERFAMILY | 15 | 135 | 121 | 1.31E-34 | ||
| Pfam | 18 | 134 | 117 | 2.6E-26 | ||
| ProSiteProfiles | 18 | 134 | 117 | 30.055 | ||
| MobiDBLite | 252 | 286 | 35 | - | – | |
| SUPERFAMILY | 281 | 373 | 93 | 1.76E-14 | ||
| Gene3D | 282 | 410 | 129 | 4.8E-14 | ||
| ProSiteProfiles | 294 | 369 | 76 | 12.287 | ||
| SMART | 295 | 365 | 71 | 2.3E-10 | ||
| Pfam | 296 | 353 | 58 | 3.9E-9 | ||
| CDD | 296 | 365 | 70 | 4.81856E-10 | – | |
| MobiDBLite | 426 | 472 | 47 | - | – | |
| MobiDBLite | 453 | 472 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0591700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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