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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0591700 |
| Transcript ID | LotjaGi1g1v0591700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113161975..113167066) extracted from Lotus japonicus Gifu genome v1.2.
CACACAACACACAACACACACACTATAGAATAGAGTATAGAGGATTCTCCCTCCCGCATTGTTTGTCCATTGTATAAAAA CCCGCTCGAATTCCCAGCGTGTTATTCATTTTTCACTTTAAATCGTGCAGGAGTGTTCTTTCTCACTCCTCTCTCTGCGA GATCCACAACCCCCCAAACCCTAGCAAACCCCTTCCGCAGAGGGAGCCTGAGAAAGAAGAACAACACCCGATCCACTCTC TCTTTCTGGTAAACCCTCTCTCTTCTAGTTTTCTCCCTCAAATTTCATTTTTCAATTTCTTTTTTCGGAATGTGCTTTCG TTTGAGTTGTTCTGGGTTTTGCTTGAACGTCGAAATTCTGGGTGCATACTGTGTTACCGTACTAGTTCTTGGATCAGGTA GTTTCTGAAGAACGCTTAGGATGCCTTTTTGAGAAACGATCTTTTATTTTTTTTGGGGAGATTAGGAATTATTTTACTTC ATAAGTTAATAAAATGAAATTAGAGCTAATTTTTTATTCAAATATTTGTTTAAGTGTAAATTATGCCTGGGAACAACCCA TAAATTTTGCTAACCCTAGTGTATTTTTTTTGGAGATGCTCTGGTTTTCGTTGGGTAATTTCGTGTTCGTTTAATGTTTA ATGTTTTAATATAGTAAGTATGTGTATCGATTGTGATGCTGAGTTGGTGGTTTTAATTGGCAGTTGGGTTAGCTTTTGGA AACCGGTACAATGGCATCTTCGGAGCAGCAAGCTACTGTGAAAACTCCTGCCGCAGATATCGTATGTATATCTACATTTT GTCGTGCATGATTGATACCACCTGCTCGCTGTTCATCTTTCGATTGACGCGTTTTGAATGAAACTGTAATGTAGGTTGGC AATGCCTTTGTTGATCAGTACTACCATATGTTGCATGAAAGCCCTGAGCTGGTGCATAGGTTTTACCAGGAAGTCAGTAA GCTTGGCCGTCCTGAACAAAATGGTCTAATGGGGATTACAACTACAATGCTTGTGAGTTCTCTCTCTCTCTCACACGCAC ACACGCATCCTTTCCTGTGCATTTAACTTGCTTCTTGTTTATAATGTGCATTACTGATATTCTATCTCTGTTGGGTTTAA TGATTTCATTTGATGTTTGATCAATTAGTATCATGTGCGTACATTTAACACTTGTGGCTCGTAGTTCAATCCCTTTATGG TATTACTGTAATCCCCCCTCCCCCCTTCAAAATCTCTAAGATTGCATTGTTAGAACTTAGAACCTGACCAGAAACTGTCT GGCTCTAATTAGTTGCTGATGCCTCTTCCTTTCTTTCCCTCTATTTTTGCTCTATATCTATTATCTGATCTATAGTCCAT TTATTAACTCAGTTTTAATACTAATATGCATAAAATATTGTGAAGGCTTGAGCTCAATAGTGATGAAATTAATATTTTCT CTATGCATTGTTTTGAAATTTTATCATGCAGGATATCAACAAGAAGATACTCTCATTGGGTTATGATGAACTCAGTGCAG AGATCATATCTGTTGACGCACAAGAATCTTATGGTGGGGGAGTCCTTGTCTTGGTCACTGGGTTTATGATAGGCAAGGAT GCCATCAAGAAGAAGTTTACACAATGTTTCTTTCTAGCTCCACAAGAGAAAGGATACTTTGTATTGAATGATGTTTTCAG ATATGTTGATGCAAATGGAATCGAAGGGTCTGCTCACGACATTGGATCTCCTGTCCCCCCTGACAATGGTAATGCATTTC TATTCAATTTAAGCTTTTTGGTTTCCTTTGGCTTCCCTTTAAGATGCGGTTGTTTACAACCTCCTTTCAGCGGCAGATCC TTCTGTGCTGGAGACACAAGTTTCCGAGGAAATACCTTTGGCTGCTGAGGATGGTGATGTAGAGGAAGTCTACAATCCAG AAAATGGGCAAGCTTCAATTGAAGAGGAGGAAGCTCCTGTACCTGAGGTTCTTGATGAAATTCCTGATGATTCACAGGTG GTAGCTGGATTGGCATCGCCAGTTGACGGAGCACCAAAGAAGTCATATGCCTATATTGTTAGTTTCCATTCTTAGATACT CTGTACCTTTCTAGTAGTTTATAAGGTCATATTGAATTTCCATTGGAAATGCATCTTTATAATCTTTGTTTGAAAAAATA GGGAGTGGAATGCTAAAAATTGACCAGAATGATACTTCAAATTTCCTTTTTATCTGGATGAGTAATAATAACTTTTGGTA CTGGTTGTTTTCCTTTCTAACTGGTGAAATTTTTAAGGTTAAGGTCATGAAAGAGGTTACAACACCATCTTCCACAGTGA CCGCTGTTCCTGTGAAATCTGCCATTAAGAGCCAAGAACAGCAGGGTACTGCTGCACCTCCACCATCCAGCATGCCAGAA AGCAATGCTCCTGGTATAATTACTAATGAAGATGGAAACAATCAAGAAACTGAAGGTATGTTGCTCATATTCACAACCTA TTGTTTTTGGAGTTGATTTTCTATAATTTTTTTACTGAGTTGTATTGTCACGTTCATTTGCTTTTGAACAGCTGAGGGAT ATTCTATTTATGTGAAAAGTCTGCCAGCTAACGCTACACCTTCTCTTCTGGAGACCGAGTTCAAGAAGTTTGGACCTATT AAGAGTGGTGGTATCCAAGTTAGGACTCAAAAGGTATTTTACTTGTTAAGTCTCTGCCTTTTTAAATCAGCAGTTAGCTA ATTTATATATTTATTTCATTTGTTTGTTTTGCATGTTAATGGATTGAGCAGGGATTTTCCTTTGGCTTTGTTGAGTTTGA AGTGGCAAGTGCTGTGCATAGTGCACTGGAGGTATTTGTCAAATTTTATTTTCATAGTTCATCCTTGTCTGATATATGAG AAAAAATTTCTAATCCAAAATTGAAGGGGAGAAATAAAGAAATACCCGCCACCCGCCGAGTCTTGGACTACTATAACTGT CATTGTACCATCAATGACCCAAGTAACTGCCATGTCTGCAACACTATGCTTGTGTGATAGCAGCTTTCTCAAACTCCTTA TGGAAGCTCTATGATGATGCCGGCTCTATCTTATGTTTGCACACCCTGCTTACGTTTTTCTTGTTAATTTCCCATATTTG TCTCTGAAATGATTCTTAGATTTAAGTTGTCAACTATGTAATGATTCCAAATATATATTAACAATTTGCAGATTATGTTC AATTTTACTGTGTACTTAGGCATATGTAGCAACTTGTGCACTGAAATGATGTTTGTTGATGAATATGATGGGGGTATACT CATGCTTGTAAATCTTATCTACTCATTTGCATGGGAAGTTTGTTAAAGCAAATGAAGAAAGCTTCTACTCCACTAAGTGT GCTGTGCTCATTGAGTTTGATTCTATTTTCATGTGTTGATGCTATAAGTTTTACAATGTTCATTACTACTGGATTGTGCT CGTCTTGAAGACTTAGTGTATTGAATTTTCCTTTTGTTTTTTCTTTCAAGCTTTCTATTCTGTATGCAATTTTCTAACTT TTGTCGAGGTCTATTATTGCTGTTGATATTTGTGCTCATATATTTGTGGCAATATTTTGTAATCAATATTTTTCTTTTCA TTTCAGGCGTCACCAATCTTGATCAATGGCCGCCAAGTTATTGTGGAGGAAAAGAGATCAACTAATCGAGGCAAGTGCTT TTTATTATTTAATTTGGTCCAATTCACATGGAGTTGCGAGTCTGGAGTTTCTGCATCTGATAACACTGAAATTTTTCTGT ATTCATCTACTAAAGCACATTTGCATGAACTTATTTGCATTGAATGATTAAGTAATTTCATACCGCATTTGGCATCCATT CAAGCATGATATATGCAATTGAATTGAAGCATGTTGATTAAATTATTTTTCACCTCATAAGGTAACCTTTGTGGACATTT ATGGGGATGATAAATTCAATGAAATGTGTTTTATGTTGTGTTTATTTTTCTTTTACTCAAGGGCTAGCAACATATGTTGA CTGTTGAGTATTTAAACGTAATTATTTCGTTGCTTGAGGAATGCCTATGGTTAATCAAAAGCTACAAAACTAATCCTTAA TTTTTCAATTCCTTGCTGTCTTCTTTATGGCAAGAACTATCCAGCACGATATTTAGCTTGTGAAGGAGAAGTTAAAAATT TATTAATACAATTTTTGTATTAAGTCATACAGTTCTCATATCTCAGCTACAAAGGAAGCATATTGTTATATAATTTTTTT ATTGAACATGAGTTTTAGTTTTCAACTATTTTGTGAGTATTTCATATACTTTTGTGGGGTTACTCGAGACTTAATCACAT GAAATTTGTGTACAATTTGCCTTGCATTTTCCTAGAAAATTTTAGTCTCCTTTTGATCTGAAAGTTGGTTTCTGTTTATG TTATTGGTCACGTTGCATTTAGAACTTAACTGTTACGCGTTCTCTGTTCAGGTAGGGGACGATTCTCATCCGGAAGAGCA CCAGTTTACAGGGCTGAAGGAGGTTACAGGGGTGAAGGTGGTTTCAGGGGTGAAGGAGGGTACAGGGGTGAAGGAGGTTA CAGGGGTGATGGAGCCAGAGGACGTGGAAACTATGGAAATGGCCGAAGCTATGGCCGTGGTGATTTTAATGGCTGGGGGG AATTTGGCTTAAGGAATGGCCCTCGAGGAGGTTTTTCTAGCCGTGGAGGTGATGGGTATCAGAGAAGTGAGGGAGCTGGC GCTGGCCGCATGAATCGCGTGCCTGCTGTTAATGCTGTTAATTCAACGGCCAAAAGTACAGCTGTTCGTGTGCCTGCGTC TGCTTGAGGAACTATTCTTCATTGAGGCAGTCAGACTAATAGAAAATGTGGTTCAATTTGCAGTAATTGAGGCAGTTAGA AAGATTTAAGAGGAGCCTTTTTTTTTGAAAAGTTTATAAGGTTCTAATTTTTTTGTCGTCCTTTTGATATTAGTAGTCTT GGTAAAGGTAGTTTTCCAATTTATGTTCATTATAATGTCATTCTAGGTAGTTTATGTGCTTCCCCATCTTTTATGAATAT AAATTCATATATTTTTTCAAATTGAATTGGTAGTTCTAACATGAGGTTGCTA
CDS sequence (LotjaGi1g1v0591700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTCGGAGCAGCAAGCTACTGTGAAAACTCCTGCCGCAGATATCGTTGGCAATGCCTTTGTTGATCAGTACTA CCATATGTTGCATGAAAGCCCTGAGCTGGTGCATAGGTTTTACCAGGAAGTCAGTAAGCTTGGCCGTCCTGAACAAAATG GTCTAATGGGGATTACAACTACAATGCTTGATATCAACAAGAAGATACTCTCATTGGGTTATGATGAACTCAGTGCAGAG ATCATATCTGTTGACGCACAAGAATCTTATGGTGGGGGAGTCCTTGTCTTGGTCACTGGGTTTATGATAGGCAAGGATGC CATCAAGAAGAAGTTTACACAATGTTTCTTTCTAGCTCCACAAGAGAAAGGATACTTTGTATTGAATGATGTTTTCAGAT ATGTTGATGCAAATGGAATCGAAGGGTCTGCTCACGACATTGGATCTCCTGTCCCCCCTGACAATGATCCTTCTGTGCTG GAGACACAAGTTTCCGAGGAAATACCTTTGGCTGCTGAGGATGGTGATGTAGAGGAAGTCTACAATCCAGAAAATGGGCA AGCTTCAATTGAAGAGGAGGAAGCTCCTGTACCTGAGGTTCTTGATGAAATTCCTGATGATTCACAGGTGGTAGCTGGAT TGGCATCGCCAGTTGACGGAGCACCAAAGAAGTCATATGCCTATATTGTTAAGGTCATGAAAGAGGTTACAACACCATCT TCCACAGTGACCGCTGTTCCTGTGAAATCTGCCATTAAGAGCCAAGAACAGCAGGGTACTGCTGCACCTCCACCATCCAG CATGCCAGAAAGCAATGCTCCTGGTATAATTACTAATGAAGATGGAAACAATCAAGAAACTGAAGCTGAGGGATATTCTA TTTATGTGAAAAGTCTGCCAGCTAACGCTACACCTTCTCTTCTGGAGACCGAGTTCAAGAAGTTTGGACCTATTAAGAGT GGTGGTATCCAAGTTAGGACTCAAAAGGGATTTTCCTTTGGCTTTGTTGAGTTTGAAGTGGCAAGTGCTGTGCATAGTGC ACTGGAGGCGTCACCAATCTTGATCAATGGCCGCCAAGTTATTGTGGAGGAAAAGAGATCAACTAATCGAGGCAAGGGAC GATTCTCATCCGGAAGAGCACCAGTTTACAGGGCTGAAGGAGGTTACAGGGGTGAAGGTGGTTTCAGGGGTGAAGGAGGG TACAGGGGTGAAGGAGGTTACAGGGGTGATGGAGCCAGAGGACGTGGAAACTATGGAAATGGCCGAAGCTATGGCCGTGG TGATTTTAATGGCTGGGGGGAATTTGGCTTAAGGAATGGCCCTCGAGGAGGTTTTTCTAGCCGTGGAGGTGATGGGTATC AGAGAAGTGAGGGAGCTGGCGCTGGCCGCATGAATCGCGTGCCTGCTGTTAATGCTGTTAATTCAACGGCCAAAAGTACA GCTGTTCGTGTGCCTGCGTCTGCTTGA
Protein sequence (LotjaGi1g1v0591700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSEQQATVKTPAADIVGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDINKKILSLGYDELSAE IISVDAQESYGGGVLVLVTGFMIGKDAIKKKFTQCFFLAPQEKGYFVLNDVFRYVDANGIEGSAHDIGSPVPPDNDPSVL ETQVSEEIPLAAEDGDVEEVYNPENGQASIEEEEAPVPEVLDEIPDDSQVVAGLASPVDGAPKKSYAYIVKVMKEVTTPS STVTAVPVKSAIKSQEQQGTAAPPPSSMPESNAPGIITNEDGNNQETEAEGYSIYVKSLPANATPSLLETEFKKFGPIKS GGIQVRTQKGFSFGFVEFEVASAVHSALEASPILINGRQVIVEEKRSTNRGKGRFSSGRAPVYRAEGGYRGEGGFRGEGG YRGEGGYRGDGARGRGNYGNGRSYGRGDFNGWGEFGLRNGPRGGFSSRGGDGYQRSEGAGAGRMNRVPAVNAVNSTAKST AVRVPASA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 138 | 133 | 9.6E-33 | – | |
| PANTHER | 9 | 402 | 394 | 4.4E-136 | ||
| PANTHER | 9 | 402 | 394 | 4.4E-136 | – | |
| CDD | 15 | 136 | 122 | 3.12631E-43 | ||
| SUPERFAMILY | 15 | 135 | 121 | 1.42E-34 | ||
| ProSiteProfiles | 18 | 134 | 117 | 30.055 | ||
| Pfam | 18 | 134 | 117 | 2.7E-26 | ||
| MobiDBLite | 250 | 284 | 35 | - | – | |
| Gene3D | 280 | 426 | 147 | 1.4E-13 | ||
| SUPERFAMILY | 281 | 398 | 118 | 4.48E-16 | ||
| ProSiteProfiles | 292 | 367 | 76 | 12.287 | ||
| SMART | 293 | 363 | 71 | 2.3E-10 | ||
| Pfam | 294 | 351 | 58 | 4.1E-9 | ||
| CDD | 294 | 363 | 70 | 4.99052E-10 | – | |
| PANTHER | 404 | 482 | 79 | 4.4E-136 | – | |
| PANTHER | 404 | 482 | 79 | 4.4E-136 | ||
| MobiDBLite | 442 | 488 | 47 | - | – | |
| MobiDBLite | 469 | 488 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0591700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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