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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0593900 |
| Transcript ID | LotjaGi1g1v0593900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family; TAIR: AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P28187|RAA5C_ARATH Ras-related protein RABA5c; TrEMBL-Plants: tr|Q08145|Q08145_PEA GTP-binding protein; Found in the gene: LotjaGi1g1v0593900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113388018..113391999) extracted from Lotus japonicus Gifu genome v1.2.
CACGCACCATGCCCGAAAAAAAGAAAAAGCGAAGAAAAACCCCAAAAACCCCTCACACGCTAACACCTCATCTTCATAAT TGCCTTCACGTTCTTCATCCATTCACATTTCACACCACACTGTTCTTCCTTTTATACGTGACTCCCACGCACTTCTCGTG AAGCGAATCATCATCCACCGTTGAACTGCGACGGCGATGGAGGACGAGAATGGCGAAGTCGGCGAGGAGTACTTGTTCAA GATCGTGCTGATTGGGGACTCTGCGGTGGGGAAGTCGAACTTGCTGTCACGGTTCGCTCGCAACGAGTTCGACAGCAACT CCAAGGCGACGATCGGTGTGGAGTTCCAGACGCAGATGGTGGAAATCGACGGCAAAGAAGTCAAGGCGCAGATCTGGGAC ACCGCCGGGCAAGAGCGGTTCAGGGCGGTTACTTCCGCTTACTACAGAGGCGCTGTTGGAGCTCTTGTTGTTTATGATAT TACCAGAAGAGGCACATTTGAGAACATCAAGAGGTGGATTGAAGAGCTTGATAGTGAGTGCATTTTATCCCTAACCTCAT TTTTCTCTCAATTTCTGGTTATCTGTTTTTGTTTCTTTCTATTTTTGGCTTTAGAAATGAGGAAATGTGTTGCTAAATTA GTGTATTGTATTGCTTGAAATTGAAGAATTGATGCGACTAAGACTGATTATGCGGTTTTAGATAGTGAAAATTGCACCTA CAACTGAGATTTTGAACCACTATTCAAAATCATCATCTATTGTATTAGTCCTTTAACTATGAAATTATCTTCAAGACGCG GTTAAGTGTGCGTTTGGATTTCCGTGTGGATCCACGTTGGCTTACATACGTTCACGTTGACACATTGAACTCAACGTGAC AAGTTCTAACTTCGACGTTTGGTGGATTGAGATACGTGAAATCACGTCTGTTGGCTCTAACGCCAAACACTAAATCATTC TCTGAAGGTGTGTTTTGTAAGTCAAACTAATTTCCCACTAATTTGACAGATTATTAGTACTGTAATCATTGACATTATGT CCAAGATACCAGGATATGCATTTATAAGTCAAATAAATCATCTAATGTGGAAACTAATTTAACTGACCAAATGCACGTCA GTCACAGAACTCAGTTTATTAGGAATTAATATATTTAGGCTCATTTGGTTATTTACTAATTTTAGAAACTAGTCCACATG GTTTTTCTTTCCCCAAGTTATTCTGGGTGTTTTTTATGCTTTAATTGCACATGATTTTTTAAGTTCCATTGCCCTTTTTT ACCCTTTTCTTAAAGATGATAGAATGATTTTGTTGATCTTCCCCTTTTCTTTTTGTCCTGTTCCATGGGCTTTTGTTAGT GGAAAATGAAATACAGAGTTTGATATGATTAAGGAGTAGAATTGGAGTTGCGTTTGCATTTACTTATATGCTAATACTGC AATTTCTAGAAACAGTTTAGACATTGGTATTTGCATCGTTGACATGTTGTCTCTGTTTGTTTTTTTGCCACTGGGAACAT GAAGCGGTGGAATAAGAAATTAGATGACGGTTGGGCATTAATTTTGTATTTACATGTAAAGTCAGTGAATCTGAAAACGA ATAAAGTCCTTGACAGAGATCAGGTGGGGGTTGTCAAATGTGGTACGGAATCTGGTAGAGGTGAATTGGGAAGGTATTAA ATTGGTTGGTGGTGCAGCTTAGAATGATGTGTCCAATCTGCTCTTGGAGATTGATTGCTTGATAGAAGTAATGAAGAGTA TAGATATGTTATCCTTTCTATCTATCTTGATTATGAGCTGATCTAATTTTTTCTTAATTTGATTTGATTAGGATATATTG ATTCTGAATTAGTATATATACTTGCTCTTGTTTCCTCTAGAATATGAATGAGAATTTCCTAACTAGTGGCCTAAAATATG GAAATTATTGAAGATTAATAATGCGATTTAATCTTGTTTATCTGAGAATGAGGGACACACTGATTGCTGGGTATTTCAGT TTAATATCTGTTCAGACATAACATTATATTTGATAAAAAGAACCTGACCCTGTTTGTGCTGGAACAAAGATGTAAGGCTG CCCTGAATCACCAAAACCCGTTGCTTAGTTGTATTTGTCACCATCCTTGTAGAGGCAGATGAGATTTGTATAGCATTCTC AAAGTTAGCAATAAATACACACCCTTCTAGAGAACTAGCAAATATCTTTTAAACTATGATGAACTATTTTTTATGTTTAA ATGCTGCTAGCATGACTGGTCCTGAATTGTGTGTGCATATTCTTTACCCTGTACTACATGAACTAGTTAAATAAACTTCC ATTTGCTTTATTTTATCTTATACTATTTCTTTCACACTTTACTTGGAGTATGTGCTTCTGTAAGTTTCTTAATAACTAAA TAGTTTTTTAGCTGCCAGACTTAATGGCACGTGTCACTTTGTCAGAAGACTCAGAACTCAGAACCTTTTTTTTTGAAAGT ACAGAACCTGAACATACTAACATAGCATCAATTTTTGCATATTATTTTACTCCGCTTAACTTTAGTGTATTATTATAGTC AAATATGAATAAACCTATGTTTTAGTCAAAACTCATTACTTTAGTTCTCAAGAAGTTTCTGTTAGCAGTATTCTCCCTAC TGTATTCTAATTATGCTTCAACCCTTATTTTAGTCTCTGGATTTTATAATTTATCTTCAAATTTGACTCTTTTGTTTAAC TAAGCCTAAGAGAAATGAGTGTAATGGAGTCCTTATTTAGGGACTCATTTCATGTTATTTTACATTATAGATGGACTGCA TTATTGGGGGACTAAATTGGTCAGAGTTATTTGTTGAACCTTTTGAGTATCAAAGTCATTTGACTATTTGAGGTTTGTAT GAAATTTGTTTTTCTGCAAGGGCTAGTTGTGTCTTCTGGTGGGGTCAGTCAAGTCATTTTGGGAGATAAACTTTTAAACC TGCATTGTTTACCTTTTACATATCAGCAGTGACATGCCTTAAAAATCTTAATTTTGTTGATTGGTTTGGTTTCCATGTAA TTTTGTAACGGAGTTTGATTCTTGCATAAATTATCTTGCAGCTCAAAATGACAGCACCATAGCAAGAATGCTGGTGGGAA ATAAGTGTGATTTGGAGAATATTAGAGAGGTGAGCATAGAGGAGGGAAAAAGTTTTGCAGAAGCAGAAGGATTGTTCTTC ATGGAGACATCTGCACTTGATTCCACCAATGTCCAAACAGCTTTCGAGATTGTTATCCGTGAAATTTACAACAACATCAG CCGGAAAGTCCTAAACTCTGATTCTTATAAGGCTGAATTGACTGTGAATCGAGTAAGCCTGGTTAATGGGGCAGGATCAA AGAAAAATCCTCTCAGTTTTTCATGCTGTTCTTGATGAGATTTTGATTTTTACTTGGATTGGATACTTGTTTGGATCTTT CAAGAGTAATTTTTTTTTTTTGGCATTTGCCTAGTTATAAGGTGGCTACTACTATTTCTTGGCTTTTGCTGTTACCTTTT TCATTACCTCCTCCAAGTTTTAAGTTCTAGGGACCCTTACACCTACCTCTCTGAATCTGTTCAGTAGGATGTTCAACTAT CAATGGCCGCTTCTGGTTAGAATTTGTTATCAGCTCTTAAATTCTTGTAATTTGTTGAAAACTTTAACAACACTTTGATG ATAGCATTTATGGAGTTTTAGGTGAACAGATTCATAAGGATATGCTAACGCCTAAGATCTCCATATGTTTCGCGGGGATA GGTTGTCAGAATCTTAGGTATCCTAACTTGTTCATAAATGGACTAGGGTGTGGCATTGATTATCTATTTGCTTAGTTTTC TCATTTAATATTTAGCACAAGAATAATTTATTTTCTTCGAGAACAGAAAAAAAATTGATTTATGCTTATTATTTTATAAT GATATATTTAGTTAATGAGATTATGTGTTTAATAACTATCTACTGTCTCATTTTATTTTGCC
CDS sequence (LotjaGi1g1v0593900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACGAGAATGGCGAAGTCGGCGAGGAGTACTTGTTCAAGATCGTGCTGATTGGGGACTCTGCGGTGGGGAAGTC GAACTTGCTGTCACGGTTCGCTCGCAACGAGTTCGACAGCAACTCCAAGGCGACGATCGGTGTGGAGTTCCAGACGCAGA TGGTGGAAATCGACGGCAAAGAAGTCAAGGCGCAGATCTGGGACACCGCCGGGCAAGAGCGGTTCAGGGCGGTTACTTCC GCTTACTACAGAGGCGCTGTTGGAGCTCTTGTTGTTTATGATATTACCAGAAGAGGCACATTTGAGAACATCAAGAGGTG GATTGAAGAGCTTGATACTCAAAATGACAGCACCATAGCAAGAATGCTGGTGGGAAATAAGTGTGATTTGGAGAATATTA GAGAGGTGAGCATAGAGGAGGGAAAAAGTTTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCTGCACTTGATTCC ACCAATGTCCAAACAGCTTTCGAGATTGTTATCCGTGAAATTTACAACAACATCAGCCGGAAAGTCCTAAACTCTGATTC TTATAAGGCTGAATTGACTGTGAATCGAGTAAGCCTGGTTAATGGGGCAGGATCAAAGAAAAATCCTCTCAGTTTTTCAT GCTGTTCTTGA
Protein sequence (LotjaGi1g1v0593900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDENGEVGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQMVEIDGKEVKAQIWDTAGQERFRAVTS AYYRGAVGALVVYDITRRGTFENIKRWIEELDTQNDSTIARMLVGNKCDLENIREVSIEEGKSFAEAEGLFFMETSALDS TNVQTAFEIVIREIYNNISRKVLNSDSYKAELTVNRVSLVNGAGSKKNPLSFSCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 209 | 203 | 5.2E-114 | – | |
| PANTHER | 7 | 209 | 203 | 5.2E-114 | – | |
| ProSiteProfiles | 9 | 215 | 207 | 35.261 | – | |
| Gene3D | 9 | 215 | 207 | 1.1E-66 | – | |
| SUPERFAMILY | 10 | 185 | 176 | 1.48E-59 | ||
| CDD | 11 | 175 | 165 | 5.76846E-108 | – | |
| SMART | 11 | 177 | 167 | 1.1E-30 | – | |
| TIGRFAM | 12 | 170 | 159 | 7.3E-38 | ||
| PRINTS | 14 | 35 | 22 | 2.0E-41 | – | |
| SMART | 14 | 177 | 164 | 5.6E-106 | – | |
| Pfam | 15 | 175 | 161 | 7.8E-62 | ||
| SMART | 16 | 177 | 162 | 3.4E-12 | – | |
| SMART | 19 | 212 | 194 | 6.7E-5 | – | |
| PRINTS | 37 | 53 | 17 | 2.0E-41 | – | |
| PRINTS | 55 | 77 | 23 | 2.0E-41 | – | |
| PRINTS | 117 | 130 | 14 | 2.0E-41 | – | |
| PRINTS | 152 | 174 | 23 | 2.0E-41 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0593900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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