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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0595700 |
| Transcript ID | LotjaGi1g1v0595700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(A)-specific ribonuclease PARN-like; TAIR: AT3G25430.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like; TrEMBL-Plants: tr|A0A151SIG1|A0A151SIG1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0595700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113535795..113540131) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGGTCATACTCATATCCGTAGGGCCGGATCCGACCCGGCCTGTCCTTCCTCCCTTCCCAGGTTTTGAAAGCAGAAAG CTCAGAACCAAAAACGCCGATGCAACAATGGCTTCACTCTTCCACCACTTGCAGTTCCTGAAGCTGAAGCAGAAGCGTTC CTTCTGCACCACCTCCAAATGGAAGGTGAAGCAGGTCACCACCTCCAACTTCACCCAATCCTTGGACGAGTTAAAGACTC ACATCTCCTCCTCGGACTTCATCGCCATATCCATGGAGAAAACCGGTTCTTCCTGCCCCCGTGTTCTCCCCTTCGATACC GCCGAAACCGCCTACCTCAAGCTCAGACCCTCCGCCCACCGCTTCCAGCTCCTCCACTTCGCCGTCTGCCCGTTTTCCGT TACCGACTCCAACAACCTCGTTGCTCACCCGTTAGTTTCTCATGTCTTTTTCTTGCCTATTAGATATTAACACTTAATCA ATTTTAGAACAAGATGTAGAGTTTAGCCATTTGCATATATGTGTAACTATTATGAAGTAGCACATGCATTTGTAATGAGA ATGTAACATTTGTACTGGATTATATTATATTAGTCCTTAGGCAGCACAGATACATTAGTTCATTACTAAGACTGATATGC AGTGTTGTTAATCGCGGAAAATAGCGGAAAACCAAAAATCCGTTATGTCAAGCCCTAAGAGTGGAAAACAGCGGATAGCA GTGAGCCCTCAGAGCGCTAAGCTATAGTGCTTTGATATCCGCTATTTGACAACACTGCTGATATGGCGAATAATACTTGT TATTGTCGAATGTGGTGTTTGCATTCGCATGAACTAATGCGGCTGTGGCCATCAAGAGTGGATTTGAGGTTCACTCTTGT TCATTTTTTCAAACTTGTGTTTTGTAGAAAAGGGGAAACATGAGATTTTGGTATGGTGCAGGTATAACTTCCTACTTTTT CCGAGAGATGAGCTGAAGATGGGGATGCCTGCATACAGTTTTTCATGCCAGACATCGTATCTGGCGTCCATGGCTCGCAA GGGTTTCGACTTCAATGCTTGCATATATAACGGTGAGGTTTTGTTGCACGTTTGTGTGTTTTGTTATCCTTTGTGGGATT TTCATGTGCCTATGAAATATTGTTCTTCTTGTGTCATGAATGAAGTATTTCGTAAGTGTAGTCCTTTGGCTTTGAAGTGT GGATGATATGTAAGCCCACCAATCTTGTGCTAGAATTTAATTTATTATTAGAAGAATGAAGGTGGCGGGGATTGGACTCT AGAACTCTACATCACTTCATAATAGAGGTTATGATATGATGACCTGAAATAGCTATACCAAAACCTTATATAAAAGGTGA AGACCCATGTATGATTTTTATATTATACTTTTACCACTTTGAAGGTGGCTTGAAAGGTTCTAAAAAAAAAATATCACTAC GAATTTGGATGTAGGGTTGTTTGTTTACCACTCCACTGCTATGTCATTCTTGAAATCGGCCACTATTTGAGATTGACAAC ACTAGGTTCGGATTACTTTTGAGTATAGGGAGCCATAAAACAAAAGAAGTCTTTGTTCATGTGTCTTCGTTTGTTACTTG TGTCAAGTATATGGATAGTATACTATTGAAGAAAGGATTTTTTCCAGGGATGGTGTTGGTGCTATGTTGTGTTCCATGTT AACATCTGTGCTTAGTGAATTTCTTCTGTGAGTACCTAAAATATTGGAATTTCTTCTGTCTTTTCTGGTAGAAGTGTTGG GGAATTGATTTTAATGCCACCCCTATAGATATTCATGCCATCCCCTTCTTCACTTTCAATGTCCGGAATGTATAATTTGT GTTCCACACTTATAAGTGCGGTATGCAATTGATTCCCGCACATATAAGTATGGTAAAATTGGGTGGCGAGAAAACGGATA GGTGTGGCGTTAAAATCAATTCCCTAAGTGTTGAGTCTAGGTAATGATAATACTTGGAAAGTTCATGACATTACAAAGGA AAAAAGAGATTGCTAGTTACCTGAAGAGATAGTCTCTTCAACTGCATACCAGAATTTGCTAGAGCTCTATTAAATCTGTA AATACAGAATGTTTATGCTTAGTTATGTGAATTGAGGATCACTGGTTCTGTATATGACCCGTTTCTATTCAAACAACAGG CATATCATATCTATCCAGAGCACAAGAGTCATTAGCTAAAATTCGTATTGGGACTGCTTCTCCTTCTCATAATGTAATGA AATCATCTTCGCCCCCTACTGTTGCTGATAAAATATTTGTTGAGAGGATTAGATCACGGATTAGACATTGGAGAAAGACA TGTAAAAGCTCGGGCACAAACTCAAGCAAAGATGGTATGAAAATCTTTAGCAAACTCTTTGTGCAATTAGGTTTTTCTTA GGTCTTTCTGTTGTTACTAAATTCTCATTTTTGTGTAGAAGAACTTATCAACTCTCTTAGGAGTATTGTCCTGGGTAGTG AACAGTTCAGATCAAGACCTTCCTTGACTATAGATGTTTGTAGTGAACGTCAAGCGCAGCTAATTTTGGAGGTAATGCAC CAATTAACTCTTAAATTGTTCTGATTTGAATGTGACAACCTTGATGGCCTCACTGTTGGTGTAACTGAATGAATCTTTTT CCTTTCTTTTATTGTTCTCTGGTTTGTCTGTTTGTAGATGTTGGTAGACTTCGCAGATGACCTTCTTCCTTTGCCAGTCC CTGCAAAGAGTGGGAGTGGGACCACCCAGGCAGTACGTATTGTTTTGGCAAATTCAAAAGAAGACAAGGATTTGTTGGAG GTAATGAGAGACTATCGCTTTTTGCTTGTTCCTCTTAGGGATTTTCTTTGGAAATGATTGTGGTTTTGTGCTGCAGAAAG AGCTTCAAAGTTTTGAAGAGGAGGAGAACAAGAAAATTCGTGGATTTCGAGAGGTGATCGATTTGATCTCTGCTTCACAG AAACCTGTTATCTCCCACAATTCCCTTAATGGTGTATCTCTTAAATGGAAATTTCTCAACTTGTTTAAGCATATTGATTT GGTCTACTTTCCTCAGTATATTAACTTTTTGATGGTTTATGCAGATTGTACACTTGTTCATTCAAAATTCATTGCACCCC TTCCACCACAAGTAGATGAGTTCATTAGCTCCTTGTGCACGGCTTTCCCCAAAGTGCTTGACCTGAATTATTTGATGAAG AAAATTGGATCCACGAGAAAACTCAGTGGCATACCTAGTGCTATATCCTACTTGAATAATAATTTCTATGCACCTGTAGA TTTGGAAATTCCTGACCGAGGTCAGTCACTGTTAAGTCCCCAACATTTTAGTTTCACATCCAAATTACAAAAGCATGCTT ATTACATGATTTGAGCCATTTTATCATGATAGTTTTGTGGAAAGCTTCATGATTAGTCCTTGTACTTCTTGCATTCTTAG CTTTACAACATGCAGAGTTTGTTTGTATTCCTTTTATACTTGAAACAAAATACTGGAAGGCTGGTTTTAATTTCATGACT GGTAGCTTAGTCTTCTTTTTATTTCATTTCTGGTTTATACAGATACAGTAAACAAAGGCAGGATTCATGGACTTAATGCA TTGAGGCTATGCTATTTATTTATGAAGCTCTGCTCTATACTGAAAATTTCTCCAATTGTTACGGAATATGGCAAGAAGCA CTTGGCCCCTGAGCTTGAAAACGCTACCAACGTCTTCCATCCATGCTCAACAAGTATCCAAGAATCATGTAATGGGGATA TTAATGTGTGGACCCATAATACAAGGAAAGTCAGTTGTGAAAATGTGGTTTTCTTGTGGGGATTTAAATTTGGCACGACA GCTGGAATGCTGAAGAACGTACTTCGTTCATCCCACGATATCTTTTCAGGAGAGTTTGATGTTAAATTGGTGGATAAGAG TTGTGCCATTGTTGTTTTCTGGCAGCAAGGGTTATCAAAAGATTTTCTAGATGTAATGAATAGTGAAGAAATTAGTGGAG ACTTAAAGGAGTTAGTGTCAGATGGTGTGAGGGTAACTTGCTATGATACCTACAAGACAATGTGTAGGCTAGGTTTGTGG GAGATGGATCTTGCAGAGTCCTTAGAAAGAGCCTTGGAAAGTTCTCGCTATGATACAAAGATTAATGGTGAAAGACATTC TTCTGAGATTCATTGGTATAATGACAATGTAATTAACTTCGATGATCTTTAAAGCTGTCTTTGAGCTATTTATATTTCTA TCAATATCTTTCACTGATTGCAAGGAAACATGACTTTTTATGGGATGCCGAACTTGTCATTAGGCAAGTTGCTTCATACT TCATCAAACTTGCAAGT
CDS sequence (LotjaGi1g1v0595700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCACTCTTCCACCACTTGCAGTTCCTGAAGCTGAAGCAGAAGCGTTCCTTCTGCACCACCTCCAAATGGAAGGT GAAGCAGGTCACCACCTCCAACTTCACCCAATCCTTGGACGAGTTAAAGACTCACATCTCCTCCTCGGACTTCATCGCCA TATCCATGGAGAAAACCGGTTCTTCCTGCCCCCGTGTTCTCCCCTTCGATACCGCCGAAACCGCCTACCTCAAGCTCAGA CCCTCCGCCCACCGCTTCCAGCTCCTCCACTTCGCCGTCTGCCCGTTTTCCGTTACCGACTCCAACAACCTCGTTGCTCA CCCGTATAACTTCCTACTTTTTCCGAGAGATGAGCTGAAGATGGGGATGCCTGCATACAGTTTTTCATGCCAGACATCGT ATCTGGCGTCCATGGCTCGCAAGGGTTTCGACTTCAATGCTTGCATATATAACGGCATATCATATCTATCCAGAGCACAA GAGTCATTAGCTAAAATTCGTATTGGGACTGCTTCTCCTTCTCATAATGTAATGAAATCATCTTCGCCCCCTACTGTTGC TGATAAAATATTTGTTGAGAGGATTAGATCACGGATTAGACATTGGAGAAAGACATGTAAAAGCTCGGGCACAAACTCAA GCAAAGATGAAGAACTTATCAACTCTCTTAGGAGTATTGTCCTGGGTAGTGAACAGTTCAGATCAAGACCTTCCTTGACT ATAGATGTTTGTAGTGAACGTCAAGCGCAGCTAATTTTGGAGATGTTGGTAGACTTCGCAGATGACCTTCTTCCTTTGCC AGTCCCTGCAAAGAGTGGGAGTGGGACCACCCAGGCAGTACGTATTGTTTTGGCAAATTCAAAAGAAGACAAGGATTTGT TGGAGAAAGAGCTTCAAAGTTTTGAAGAGGAGGAGAACAAGAAAATTCGTGGATTTCGAGAGGTGATCGATTTGATCTCT GCTTCACAGAAACCTGTTATCTCCCACAATTCCCTTAATGATTGTACACTTGTTCATTCAAAATTCATTGCACCCCTTCC ACCACAAGTAGATGAGTTCATTAGCTCCTTGTGCACGGCTTTCCCCAAAGTGCTTGACCTGAATTATTTGATGAAGAAAA TTGGATCCACGAGAAAACTCAGTGGCATACCTAGTGCTATATCCTACTTGAATAATAATTTCTATGCACCTGTAGATTTG GAAATTCCTGACCGAGATACAGTAAACAAAGGCAGGATTCATGGACTTAATGCATTGAGGCTATGCTATTTATTTATGAA GCTCTGCTCTATACTGAAAATTTCTCCAATTGTTACGGAATATGGCAAGAAGCACTTGGCCCCTGAGCTTGAAAACGCTA CCAACGTCTTCCATCCATGCTCAACAAGTATCCAAGAATCATGTAATGGGGATATTAATGTGTGGACCCATAATACAAGG AAAGTCAGTTGTGAAAATGTGGTTTTCTTGTGGGGATTTAAATTTGGCACGACAGCTGGAATGCTGAAGAACGTACTTCG TTCATCCCACGATATCTTTTCAGGAGAGTTTGATGTTAAATTGGTGGATAAGAGTTGTGCCATTGTTGTTTTCTGGCAGC AAGGGTTATCAAAAGATTTTCTAGATGTAATGAATAGTGAAGAAATTAGTGGAGACTTAAAGGAGTTAGTGTCAGATGGT GTGAGGGTAACTTGCTATGATACCTACAAGACAATGTGTAGGCTAGGTTTGTGGGAGATGGATCTTGCAGAGTCCTTAGA AAGAGCCTTGGAAAGTTCTCGCTATGATACAAAGATTAATGGTGAAAGACATTCTTCTGAGATTCATTGGTATAATGACA ATGTAATTAACTTCGATGATCTTTAA
Protein sequence (LotjaGi1g1v0595700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLFHHLQFLKLKQKRSFCTTSKWKVKQVTTSNFTQSLDELKTHISSSDFIAISMEKTGSSCPRVLPFDTAETAYLKLR PSAHRFQLLHFAVCPFSVTDSNNLVAHPYNFLLFPRDELKMGMPAYSFSCQTSYLASMARKGFDFNACIYNGISYLSRAQ ESLAKIRIGTASPSHNVMKSSSPPTVADKIFVERIRSRIRHWRKTCKSSGTNSSKDEELINSLRSIVLGSEQFRSRPSLT IDVCSERQAQLILEMLVDFADDLLPLPVPAKSGSGTTQAVRIVLANSKEDKDLLEKELQSFEEEENKKIRGFREVIDLIS ASQKPVISHNSLNDCTLVHSKFIAPLPPQVDEFISSLCTAFPKVLDLNYLMKKIGSTRKLSGIPSAISYLNNNFYAPVDL EIPDRDTVNKGRIHGLNALRLCYLFMKLCSILKISPIVTEYGKKHLAPELENATNVFHPCSTSIQESCNGDINVWTHNTR KVSCENVVFLWGFKFGTTAGMLKNVLRSSHDIFSGEFDVKLVDKSCAIVVFWQQGLSKDFLDVMNSEEISGDLKELVSDG VRVTCYDTYKTMCRLGLWEMDLAESLERALESSRYDTKINGERHSSEIHWYNDNVINFDDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 619 | 605 | 5.2E-273 | – | |
| PANTHER | 15 | 619 | 605 | 5.2E-273 | – | |
| SUPERFAMILY | 22 | 432 | 411 | 1.71E-40 | ||
| Pfam | 30 | 393 | 364 | 4.6E-61 | ||
| Gene3D | 30 | 399 | 370 | 9.4E-57 | ||
| Gene3D | 179 | 287 | 109 | 9.4E-57 | ||
| Coils | 284 | 304 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0595700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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