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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0596600 |
| Transcript ID | LotjaGi1g1v0596600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G60870.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1KYX5|I1KYX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0596600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113603365..113607376) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAATCGCCAGCCATCGCCACCAAATAGCCACCATCACTCGGCGCTTGTGTTGCTCCTACTCCTCCACCTCCTCCGC CGCTAAACCCCCTCTCCTCTACACCACAGACACACCCGACACCGAAACCACAACCATCCAGCTCCTCTCATGGGGCAAGG GCGCCTCAGGTCAACTCGGCGGCGGCGTCGAAGAAGTTCGCCTCTACCCTTCTCCGGTGGCCAACCTGGTCATCCCCAAG TCCTCGTTCGCCCTCTCCCGAACCCCAGGGAGGCTCCACCATGAGAGTACCAACAAGGAGGTGGTGGAATTGGGCATCTC GTGTGGGCTTTTCCACTCTTCCCTGGTCGTCGATGGTGCCCTTTGGGTTTGGGGCAAAGGCGACGGCGGAAGATTGGGAT TGGGCCATGAGCATCCATTGTTCGTTCCTACCTTGAACCCTCACCTGGACGACGTTCGCTCTGTTGCCCTCGGTGGCCTC CATTCCGTTGCGCTTGTTTCCCCCGGCGAGGTTTTCACTTGGTCAGAATCACTTCAACTCTCTTCCTCTAATTCAAGCAA ATTTTGATTCGATTTTGACATGCAATTGTGGGGTGGAAATGATCTGCATTTGTGTATTCATGCTTTCTCTGCTCTGAATA ACATTGATTTTTATGGATGAACATGAAGTTTGCAGGGGTTATGGTGGTTTCGGCGCGCTTGGACACGCTGTATATCATAG AGAGCTGTTGCCTAGGTTGGTAGAAGGCTGCTGGGAGGGAACTATAAAACACATTGCTACAAGTGGAACACATACTGCTG CACTCACAGAGTCAGGTTCTTTTGATGTTCAGAACTTCGTTTCATTCTTGTTTTATTTATACAAGTTTGGATTGATTAGT TGTAAGATAATAGGTTTTAGAATTTGAAACCTTTGTCATCACTTCCGTTGTGTTATGTCATATGTCAAATTTTTGTTTTT TTTGTTTTTGGAAAAATGTATTTATTGATAATTGTTAGCATCTGAAATAGACATAAGAGCGAGTGATACTTTGTACAAGG ATGAAGAAGAAAAGTAGAAAACTGCTTGAAGAGTTTATGTTCATTGTCAACACAGTTGAGTTAGGGTTAGTTGGGAGTTA ATGATGTTAGTCAGGAGTTGGTTATGTTAATTTTCAAGACAATTAGGGTTAATTAGGAAATGGAGTTCGAAGTAGGAGTC CTTATGGTTGGTTAATCCTAGTACTCTATTTTGTTGGTTAATCCTATTATCCTATCAAGACGAGGAAGCAGAAATTGATT TACAACCGGTGATATCCCAGATGCAAAGAAAAGATTCTGGAGTAAGGAAACCAGAAATTGATTTATACCTTTTAGATTCT ACTTGAATTAATTATGCATATCTCCTTATGCTTTTGTTAGAAAGGTTTTGTGTCCTAAAGATATTGGCATGCGTTGAAAG AAACTTGTGGTCCCAACTCCCAGTTATAAGGTAGCTTGGGAGAATGTTTAATCCTCAAGGATATACATTCATTTTTCTAG ACTAGTGTACAAGCTTTTATGACGAATTTGAGTTTCTGCATCATAATGTTCTGTATTATTTAATATGAACTATATGTCGT GTGAAAGGGTACACACTTTGAAACTGATGGCAGGTTTCTGTTGGATGTAGGCGAGCTCTATATCTGGGGTCGAGATGAAG GAGATGGTCGATTGGGCCTTGGTCCGGGTCGAGGCCCAGATCATGCAGGTGGACTTAGTATCCCTTGCAAAGTAAAAGAA TTACCTTGTCCTATTGCTGCTGTTTCCTGTGGGGGATTTTTCACAATGGCATTAACAGAGGATGGACAACTGTGGAACTG GGGAGGTAATTGTCTTATTCTTTATATGATCTTTTTCTCACTAAATTTTCTCAAGAAGCCTAGTCCAGTCCATATATCCA CTGCTTTTAGTTTTGGAAAATTGACTAAATTGTCATTTTCTCAGCAAATTCTAACTATGAACTTGGGAGAGGTGATAAGA TAGGTGGTTGGAAACCAAGACCAGTACCCAGCCTTGAGAATGTTCGAATAATTCAAATAGCAAGTGGAGGATATCACTCC CTTGCATTAACCGGTAAATTTATGTGGCATTAAGCTAGCAGTTCATTTCATTTTTATTGCTGATGGATTATATCATTTTA ACTATTTTAATCTTGACTTATATTAGATAATGGAAAAGTGCTTTCATGGGGCCACGGTGGACAAGGTCAGTTGGGTCATG GATCTATCCAGAATCAGAAGATACCAATGGTGATCGAGGCTTTAGCTACTGAGCATATTATATATATTTCTTGCGGGGGC TCCTTTTCAGCAGCTGTGACAGGTTTGATTCACCTCACCTGGCATATCCTACTATATACAGAATTTGGACTTCAAATACA TAAATGACTTTTATCCTTACGAGTCTTCGGGAATCTATCCTACTGGAGCATATTCATATGATGCTCCAAAATTGCATGTC ATTTTAGGCAACAGGTTGTTCCCAGGTTCAATTATTTTAGGTGTCACTGTTGTTGGACGAAAGAAATCATAAGCAAGAGA AATAGAGAGAAGTTTCTGAATTTTATTTCTGATTTGTTAACTGTACAATTGAGCTTACAATAGTATTTATAGAATGCTCT AGCTTCTCATAGAAGCTGATATGTACCTAGTCAACAGCTGGCAACAGTTACTAAACAGAAAACTGTTAAGAACAAACTAA CAAACCAAGCCTGACTATCACTAACATTCCCCCATTAAACTGTGAGTAGTTGAGACTTGTAAACTACTCGAAGTTTATCT CTTAGCTCTGAGAATCTCTGCTTGGAAAGAGCTTTAATAAGTATGTCAGCTACTTGCTCATGACTTGGAACATGGGAGAC AGCAAGAGTCTTAGCCTAGACCTTCTCCCGAACAAAAAATATATCCAAATTCCATTTGTTTAGATATCTCAACACTCCCC CTCAAGCTAAAGGAAGTAAATCCTCTTTTTGCCAATAACTCTATATCACTAACACTGGATAATGTTTGAATTTGTCTACT TTAAAAGTCTTGCTAGTTTCTAGTCAATATAGTTGTATGTCCAGCGACAATTATGCTGAATAGGTAATTTCTGCTGCAAT TGCTCATCCAGAGTGTGGAACAGAGCCTACTAGTTGCCTAAGGCCAGTGGCATAACATTCTAATTTTTACCTCCTCATGA AGCACCACAGTAGCCACTTCTACATTTTTTGCCCAAAGTTGGTCTGGCAGTTGCACTGATGCAGAACTTCTTGTTTCTGT CTCCCCTAAATTAAAGAACCCACTGTCGATCTGGCCAGAACCCAAAGTTATGTTGCCAGTTTCGATAGATAACTGGTAGG TTTCTTCTGTGTGTGAGCAGTCAACTTTTACTTTGTGTTGTTTTCCTGTCTTCTAGCTTCTTCTGTTCACTTTTGCTTGT CTTTCTTCTATCCATCTCTGCCCAAAGTTCGTCTCAACCTTATCATGATCCGGTGATATCACCTGGCACGGGTTAGGAAC TTCATTAAGATTTTGAAGCCAGATTGGTTGTGTTTATTAAGTTCAGCTTCATCCTGTAATGCTGCTAGTCTGGAACGTGA AATTAATTTCAAAATTTGGATTTATTATTTTCATTGATTTGAGATGGATCTCAAAATGAGAATGGGTCTGAGTCTGATAA AATGTCAACCTGAGATTATGATTTTTACTTCTCTGGTAAATTTTGGACAGAAAGTTTTCTCAGTATTTAGATAGTTATTT ATTTTTTCAAATTGGTGTTGAGCAAATTTATAAAAGCTTTTTTTGTTGCTCTGAACAGATAAAGGAAAGTTGTACATGTG GGGAAATGCCAGTGATTCTCAATTAGGAGTTCCTGGGCTACCAGCGATACAATCATCCCCTATTGAAGTCAACTTTTTAA TGGAAGATGATGGATTGGGACCTCACAAGGTTTTATCAGTTGCAACTGGTGCGTCACATGCCATGTGTTTAGCTTTGAGG GAAAGTTGTTGA
CDS sequence (LotjaGi1g1v0596600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCGCCAGCCATCGCCACCAAATAGCCACCATCACTCGGCGCTTGTGTTGCTCCTACTCCTCCACCTCCTCCGC CGCTAAACCCCCTCTCCTCTACACCACAGACACACCCGACACCGAAACCACAACCATCCAGCTCCTCTCATGGGGCAAGG GCGCCTCAGGTCAACTCGGCGGCGGCGTCGAAGAAGTTCGCCTCTACCCTTCTCCGGTGGCCAACCTGGTCATCCCCAAG TCCTCGTTCGCCCTCTCCCGAACCCCAGGGAGGCTCCACCATGAGAGTACCAACAAGGAGGTGGTGGAATTGGGCATCTC GTGTGGGCTTTTCCACTCTTCCCTGGTCGTCGATGGTGCCCTTTGGGTTTGGGGCAAAGGCGACGGCGGAAGATTGGGAT TGGGCCATGAGCATCCATTGTTCGTTCCTACCTTGAACCCTCACCTGGACGACGTTCGCTCTGTTGCCCTCGGTGGCCTC CATTCCGTTGCGCTTGTTTCCCCCGGCGAGGTTTTCACTTGGGGTTATGGTGGTTTCGGCGCGCTTGGACACGCTGTATA TCATAGAGAGCTGTTGCCTAGGTTGGTAGAAGGCTGCTGGGAGGGAACTATAAAACACATTGCTACAAGTGGAACACATA CTGCTGCACTCACAGAGTCAGGCGAGCTCTATATCTGGGGTCGAGATGAAGGAGATGGTCGATTGGGCCTTGGTCCGGGT CGAGGCCCAGATCATGCAGGTGGACTTAGTATCCCTTGCAAAGTAAAAGAATTACCTTGTCCTATTGCTGCTGTTTCCTG TGGGGGATTTTTCACAATGGCATTAACAGAGGATGGACAACTGTGGAACTGGGGAGCAAATTCTAACTATGAACTTGGGA GAGGTGATAAGATAGGTGGTTGGAAACCAAGACCAGTACCCAGCCTTGAGAATGTTCGAATAATTCAAATAGCAAGTGGA GGATATCACTCCCTTGCATTAACCGATAATGGAAAAGTGCTTTCATGGGGCCACGGTGGACAAGGTCAGTTGGGTCATGG ATCTATCCAGAATCAGAAGATACCAATGGTGATCGAGGCTTTAGCTACTGAGCATATTATATATATTTCTTGCGGGGGCT CCTTTTCAGCAGCTGTGACAGATAAAGGAAAGTTGTACATGTGGGGAAATGCCAGTGATTCTCAATTAGGAGTTCCTGGG CTACCAGCGATACAATCATCCCCTATTGAAGTCAACTTTTTAATGGAAGATGATGGATTGGGACCTCACAAGGTTTTATC AGTTGCAACTGGTGCGTCACATGCCATGTGTTTAGCTTTGAGGGAAAGTTGTTGA
Protein sequence (LotjaGi1g1v0596600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIASHRHQIATITRRLCCSYSSTSSAAKPPLLYTTDTPDTETTTIQLLSWGKGASGQLGGGVEEVRLYPSPVANLVIPK SSFALSRTPGRLHHESTNKEVVELGISCGLFHSSLVVDGALWVWGKGDGGRLGLGHEHPLFVPTLNPHLDDVRSVALGGL HSVALVSPGEVFTWGYGGFGALGHAVYHRELLPRLVEGCWEGTIKHIATSGTHTAALTESGELYIWGRDEGDGRLGLGPG RGPDHAGGLSIPCKVKELPCPIAAVSCGGFFTMALTEDGQLWNWGANSNYELGRGDKIGGWKPRPVPSLENVRIIQIASG GYHSLALTDNGKVLSWGHGGQGQLGHGSIQNQKIPMVIEALATEHIIYISCGGSFSAAVTDKGKLYMWGNASDSQLGVPG LPAIQSSPIEVNFLMEDDGLGPHKVLSVATGASHAMCLALRESC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 21 | 442 | 422 | 5.8E-220 | – | |
| PANTHER | 21 | 442 | 422 | 5.8E-220 | – | |
| Gene3D | 40 | 231 | 192 | 8.9E-37 | ||
| PRINTS | 48 | 64 | 17 | 2.4E-14 | ||
| SUPERFAMILY | 115 | 438 | 324 | 9.16E-83 | ||
| Pfam | 118 | 165 | 48 | 4.2E-10 | ||
| PRINTS | 119 | 135 | 17 | 2.4E-14 | ||
| ProSiteProfiles | 119 | 168 | 50 | 14.042 | ||
| PRINTS | 155 | 171 | 17 | 2.4E-14 | ||
| ProSiteProfiles | 169 | 220 | 52 | 13.68 | ||
| Pfam | 169 | 217 | 49 | 1.4E-7 | ||
| PRINTS | 171 | 185 | 15 | 2.4E-14 | ||
| Pfam | 220 | 275 | 56 | 4.5E-7 | ||
| ProSiteProfiles | 221 | 278 | 58 | 13.981 | ||
| Gene3D | 232 | 443 | 212 | 2.3E-56 | ||
| PRINTS | 268 | 286 | 19 | 2.4E-14 | ||
| Pfam | 278 | 327 | 50 | 8.7E-12 | ||
| ProSiteProfiles | 279 | 330 | 52 | 16.313 | ||
| ProSitePatterns | 317 | 327 | 11 | - | ||
| PRINTS | 326 | 347 | 22 | 2.4E-14 | ||
| Pfam | 330 | 379 | 50 | 1.4E-12 | ||
| ProSiteProfiles | 331 | 382 | 52 | 15.388 | ||
| Pfam | 382 | 438 | 57 | 2.4E-6 | ||
| ProSiteProfiles | 383 | 441 | 59 | 12.554 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0596600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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