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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0596800 |
| Transcript ID | LotjaGi1g1v0596800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongator complex protein 6; TAIR: AT4G10090.1 elongator protein 6; Swiss-Prot: sp|Q8L9Y2|ELP6_ARATH Elongator complex protein 6; TrEMBL-Plants: tr|C6TH84|C6TH84_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0596800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113647749..113653996) extracted from Lotus japonicus Gifu genome v1.2.
CCCCACTTTAAGTGGGGCGCGGAGCTCCATAGGGGGGGCCCCAAACCCAACTCCCGTCAAACACCCCTAAACCCCTTCCG ACGGTGGTGCAGTCTAAAATTTCACCCACCCACCGAAGCCGCCGCCGTGATTCTTTGGCATTGCAGAGGCCGGAGGAGGA GGAACCAGAAAGAAGAACAAGAAGATGGAGCAGCACAGAGATTCTAACCTACTGGATGAAGCGCTAGGTCTTCACAACAA CAACAACAGTTTGTGTGGTCGCTTCGTGCTTGTAGAGGACTGTGTTGACACAAGCGCCGCTTTCGTTCTTCACCATATCA TCAAACGCTCCCTCTCTTCTCACCCCGTCGTCTTCCTTGCCTTCTCTCACCCTTTTTCCCACTACGACCGCATCCTCAGA AAGCTTGTACGCTACTCACTTGTTATTTTTCTTAAAGGCTCATTGCTAACAGTTTTTTTTTCTTTCTATTGCATGGTTTT TTTTCCAATTTAGGAACTGGTAACTTTTGTTCTGATCATTCATGTTATTTTTGCTTGTGGGTTTTGCTTTATTTGTTACA TTTTTGTTGTAAATGTTGTTCAGTTATTTATTTGGCCTTCATGCTTGTCTTGCACTGTAGTAACAAGGGTAGTAATTCAT GTTAAATTACTACTACCCTTGTTACTGAATGATATGCTGCTGAACTGACCAAATATTGATAGCATGTATTATGTCTAAAG CGAGAATCAATTCTAGGAAGAAGCTCGTGTGAATTTCATAATTGATTAGGAAAGAAAAGCTGTTAAAAATTCTAGAATGA TCAGTTTTTCTTTCCTTAAATAAGTCCAAAACCCAAAAGGTGCTCATAGGAGCTTCTTCCCAGAATTGATTCTGGTTTTC GAATTAACTGCAAAAGGATTTCCAAAGATGCACTAAATAGTAAATACAAGTGACTTTAAAGATAGTGGTACAAAGGATGA TAGTTTCCCTATCTATTGCTTTTGGACTTGTATTATTTTCTCCGTCAATGTTTGTTTCCATTACATGCTAGTCATTTGTT TATTAGATTATTCTGTATTCTATTAGAATGTTTTTTTATTTTTCCTGATGGATGGGATCTGACAATAACCACTACTACCT GCTGCAGGGTTGCAACTTAGCTGCTCAAAGAGATAATAATAGATTCTTTTTCATTGACATGCTTATGTTGCAGTGTCCAG GTGAGGAAATCAGGTATAATTGTTTGGTTCTTTCCATTTCCTTGGCAAAATTAAATGATGTAAGAATGGATTCATTTGAT ATGATATTTAATTGTTACCATTATACCATGCATTAAATTTAGAGCAGAAACAGAACATGCGGAATATATTTACTTCATCA GACAAACTTAAAACTTCTCCTGGAAAATCATTGATCCAAAGTAGGCTTTGACATCTTCTAAGAAAGCTTGCATTCCTTTT CAACCTATACGGTTTGATGGTCAACGGGAGGAAAAGATCTCTTCTTAAAACTCTGTCCAGTTCTTCACAATTACTTGCAA CTAAGAACTACTTCCCAGTCTAAACCATCTACATAAGCTCTTCAAATATGTATTCAAAATCCTTCTTCAACAAAATACAA AATGAGTAATCCAACATTTATAGTATCAGGGGGTGTGAACACAAGGGCTGTTCAATCCCTGCCACTCTCATTCTGGCTGC ATGCAGGTTTTATGTTTTATCTCTGTGTAGTTAAGTAGCCTTTTTTTGTGCTTAATGCTGGTTATCATGAAAGAGTATTT GTTTTGAAGGATAACAGTATTCTATATGTGATTCTTTGTAATCCTTGAGGTCATTTGATGTTTATTTAGAATCTGTCTCA GCCTCTTTGGATTTGGAAGATAAAACCCATCTCAATAGAGGTCTTTGATCCAAAGATAAGTGTTATAGTTATTAATATTA TATTACGATAAGAACTTGACATTTTACGACACGAAATAGGGATAACCCCAATAGAGATAGATACTAAGGGTCTGCAAACC TCCGTGCCCGAAGACTCCAAAACTTGCTCAATGACTGGATGCCCTCTCCCTCACTTTTCCCTTCCTTTATCTTTACTTCT AACTTTTTCCCTTCCTTCCTACCCTCCTTGCCAGTGGGCTAGTTTGTTAAAGTCCAAATTGCTCTACTGCCCCTTGCAGT TATTGTACATTCTGAGCTCTATAATTTGAGGAACATTTCTCGGTGGAGTTGTCAAATCTGAAATTGGATATAGTTCACTA GGCATAAGCATTGAAACTGTAGAGGAAGGTTCCAATAGCATTTAGTTGAAGTGCATGGACATTGTTTAAGCATACTCGTC CTCAGAGAGTGAAATTAAAGTTTGAGACCCATATCTAATTTCCAAGCATGAGCTCTCCATACTTTCAGGCATGTAACGTT TATGGCCGATAATAGCAATTACACTCTTCTGATTATGTCCGCTGGCCTTTACCAAGTTCCTATTTTCTGATGTCGACCTC AATGCCATGTCAACAGCTTGCTTCCAGGCACCATGACTGTCAAAAAAATCAAGTGTTGAAAATATCAAATTCAATGAGGC ACTGGTTTTCAAGAATCTTACTTGCTGCCACCACAATCTCCGTTTTGCGCTCTGTGCAAGCTCTTCTCCCTTCAGCTCCT TCATCGTGAGCTCATCTAGTTTCTGCTCCTTCATTGCAGTGGACAGTTTCCATCTACTGTCACAACCTCCTTTTTGTTTT TCCTTCTCTGCTTGGCCTCAATCTCCTCTGTCAAGCTACTGCTTTTTTCGCTTGTATGGTTGAAAGATTCTCAGGTTACT CCTTCCCATCCATGATCTCCAGTTTCAAAACATAATTAATCAATCTCTATTTTTAGCTTTGAAGGTTGTAGTTCTGTTTC ATACTAATAGTACTCTATCTCTATTTGCGGATTGTCCTCAGGTCGGAAACACATAAGCTACACCCTTTGGAATGTTTCTC ACGTGGCCTTAGGATTGCAAACTCCCACCGCATGTTCCAACTTTAGGAACATCAGTCCGGAACCATCCCAGCCAGCTGCA GCTTCCCCTCATTCATTCCTTGTACATCGAAGTGTTGCTTAGGCGAGTCAACCACCCATATGCATTATCTCCTTCAAATA TTGGAATCCGCTCCTTGAGTGCTTTCCTTAAGCTTGCAAACTCCTTATGTAATCTTCAAGCCTGTGCTTCTCCATTCTTT TGGTTTTCAACTAGGAAATAGAAGAAAAGCTTCTATTGTTATTACAAATATGAAAACTCTTGATGCAGACATTAAGTCCC TCTAGATTTCAAACAAAATGTAAGTTAAGACTGCTAAGATACCATGATACAGTAGCGCAAACAACACTAGGCATACAGTA GAAAGTACTTGTGCTAAAGTATCATGAACAGTACAACTACAAATCAATAATAGCCCAAACAGCGATCCAACATTTTAATT GTAATTGAACGGAACCCTTTGTCCTGCACCATGGTCCATGCCTCTCCAAGGTGATTAGCACATTGTCTTCTTTAAGTGAA TAGTACTATATTAAAAGCATGAATAGAAGGTGAAAAAGAAAAGCCGCTTAAAATGCCAAAAGTTTGAGCACCAAAGTGAA TTGTAGTAAACTTCCCATGCCAAACCAAGGGTAAAGAAAGAGGCCTTTTCTTAAGGATTCACCGTTGAGAGTGTGCTTTT GGATGCTTTCAAATTTATTTGAATTTGAATATGTTACTTTGATTTGTTAGTAGATAAGATATTTTCAGTTTTTATTGATT AGGTGACTAATCCTTGTACATAATGCCCAAAATCAACCCCAAAACTTTGAAATCATCAAGTTTGGAACAATAGATATCTG TACGGCCAACATGCTATTATGAATTTTGCCTATTTTTTGGGCAAGCCATAGCATTTAGGTTTTGTAAATATGTCATTCCA TACATAACTTTTTAAAAGGGTTTGTGCTTACATGATTTAATATTTTTTTTATTTTACCTTGGGTAGTCACGATATTGTGA TACTTATAGTGTCTGATGGATTATATACGTGCCTGAGTAGTATCAAATTTATCAATGACTAGATGAAGGAAAACTGAATC ATGATGGGTTTGCTGCTGTATTTGAGAAGATAGAAAGAGTGGTCAAGGCATTACATCAAGACAACATGAAATTTGCCAGT ATCATGATAGATGATATATCTTTTCTTGAGGTTGCTGCTAATGGCTCTTCAAATGATGTTTTAGACTTCCTGCATTATTG CCACACGCTAACATCAGAATATGTAAGTTAATATTTAGCTTGGTTGTTTTTTAAATCAATTTCAATGTTTTTTGTTCTTT ATTTCCCTCTGTTCCTGTCACAGGGTTGCGCATTTATTGCACTTGACCATAAGGATATTTATCTGAATGAAGAGAGGCCT GCCATTATCTTAGAGATGGAGTACCTTGCTGACGTTTTGGTCAAGGCTGAACCATTGGCCACTGGTTTGGCAAAAGATGT GCATGGGCAGGTATCATTCTTCATAATAAGTTCATACTTAAGCTGTATACATGATTGGCATTTTATAAAATGTTGATGGA GTAAAATAATCTTCTAAATGAGAACAATCTCTCTTTGACTTCCATTTGATAGAGATCAATACCCAGAAAGGAATCAAGAG TCTCATCTTTCCATTATTAATAGCTCGGAGCCTCAACTGATATTTTATATAAATTAAACCCAGTCGCTGCTGCTTTTATC TAGAAATGAAATACAGAATAGGAAATTTCACCTTCTAAGGAGAGTCTAGAGACCATTGATTTGTGCACCACATGCTCTCA CCTTGCCTTATTAACTGATAGGAACTGGGTATATTGAATGTAGAAATGAACAAGGTTGTTGAGTAATTGGAGAGACTCAG CCTCTCTCCCTAAGTCCCAAACCCCAAATGATCCAAAAGATAACAATAATCACCCTAAACTCTCTATTTATAGGCAATAT ACCACTCTAACTACCCCCCCCCCCCCAAACACTAATTAACCAACTTAACATTGACCTTGAAAGGTGTCAATTAACTCAAG AAACTAGCCTTAACTGGCCACATGATCTTCGCTACCGGTGCTAGCTCAAATTTGTTCTAATTGCTCCAGGATCTCAAAAC ACGCACATATATATAGATAATACCGTTGATCTGGAGACTTTAAAATCAGTGATCTTTTCTTCTTCTACATGTCTGGCCCA CAATTCCATACTTCTAGCTTCTCATTTGAATCCCTCGAATTATCTATCATCTTCAGTGGTGCTGTTAGTGTTAGTACATG TATAAGTATTTTCTAACCCTACAAAACTAAGAGAAATGGAGAAAATAAATCATTATCGTTTATGTTTCCAAGATTGTATG TTTTAGTGTTGTAGAAGTGATACCGCAATTGCAAAGATGGTTTTGTTTGCATGCAAAGATGATTTAATGTAGCAACTGGT ATCAACTATGGATTACATCATATCACATTATCTCAGGTTGACTAAGTTTTGTTATTCATCTTATGCAGTTGATGGTGTTA CATAAGGAAACACAACATCAACATGGGAGTTCACCCTTTAAGATCCACAATTTTCACTTCAAGATCAAGGAAAATAGCAT CGAGTGTTTTTATCCTGGCACAAAAATCTAGTGCCAGCAAAACACCTGCAAAAACAGCTCGTGTAATCTTGAAAGAGACA ATAATAGCACATCTATTATGTTGTGTTTTCCTATGTTTAGAAGAAAGTTCTTAATTTTCAATATGGAAATTATTTATTTT ATCACGGACTTTCAATGGGTTTTTGAATTGATTATGTGCTAGAATGATTCTACTATTGAATTTGGGCTTAAGACTATGTT TGGATTGAGAAGAGAGTAGATGGGAAAAAAAAGTTAGTGAGAAAAAAGACTGAATTTAGATTGATTATGTGCTAAAATGA AGAGAAATAGGGTAATAGGAAGTTTCTCTTCTCGCTTGCCATGAAATTTGGATACAAATTTGAAAAAAAAATTATGCTAA AGCAATGTAATTTTAAAAGTGAGCAAGACTTATGCACTCAATATCTTAGAATTTTTATGAAAGATGTGATGTCCTTTTAC TAATATTGTTTACTCTTTGTGAAATGTGGTATATACAAAATATATTTATGCGTACTCTCATGCTATAACATTGTGGAATA ACCTCACCCCACAACACTACTAATAGAAAACTGAATGGTTAAGACCCTGATTCCCATAACCTTTTGCTAAGAGAGTATGG TAATACAG
CDS sequence (LotjaGi1g1v0596800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGCACAGAGATTCTAACCTACTGGATGAAGCGCTAGGTCTTCACAACAACAACAACAGTTTGTGTGGTCGCTT CGTGCTTGTAGAGGACTGTGTTGACACAAGCGCCGCTTTCGTTCTTCACCATATCATCAAACGCTCCCTCTCTTCTCACC CCGTCGTCTTCCTTGCCTTCTCTCACCCTTTTTCCCACTACGACCGCATCCTCAGAAAGCTTGGTTGCAACTTAGCTGCT CAAAGAGATAATAATAGATTCTTTTTCATTGACATGCTTATGTTGCAGTGTCCAGATGAAGGAAAACTGAATCATGATGG GTTTGCTGCTGTATTTGAGAAGATAGAAAGAGTGGTCAAGGCATTACATCAAGACAACATGAAATTTGCCAGTATCATGA TAGATGATATATCTTTTCTTGAGGTTGCTGCTAATGGCTCTTCAAATGATGTTTTAGACTTCCTGCATTATTGCCACACG CTAACATCAGAATATGGTTGCGCATTTATTGCACTTGACCATAAGGATATTTATCTGAATGAAGAGAGGCCTGCCATTAT CTTAGAGATGGAGTACCTTGCTGACGTTTTGGTCAAGGCTGAACCATTGGCCACTGGTTTGGCAAAAGATGTGCATGGGC AGTTGATGGTGTTACATAAGGAAACACAACATCAACATGGGAGTTCACCCTTTAAGATCCACAATTTTCACTTCAAGATC AAGGAAAATAGCATCGAGTGTTTTTATCCTGGCACAAAAATCTAG
Protein sequence (LotjaGi1g1v0596800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQHRDSNLLDEALGLHNNNNSLCGRFVLVEDCVDTSAAFVLHHIIKRSLSSHPVVFLAFSHPFSHYDRILRKLGCNLAA QRDNNRFFFIDMLMLQCPDEGKLNHDGFAAVFEKIERVVKALHQDNMKFASIMIDDISFLEVAANGSSNDVLDFLHYCHT LTSEYGCAFIALDHKDIYLNEERPAIILEMEYLADVLVKAEPLATGLAKDVHGQLMVLHKETQHQHGSSPFKIHNFHFKI KENSIECFYPGTKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 253 | 243 | 4.0E-98 | ||
| Pfam | 13 | 241 | 229 | 5.1E-31 | ||
| Gene3D | 37 | 240 | 204 | 1.5E-11 | – | |
| SUPERFAMILY | 50 | 200 | 151 | 8.18E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Cellular component | Elongator holoenzyme complex | A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes. |
Expression pattern of LotjaGi1g1v0596800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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