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LotjaGi1g1v0601500.1

Overview

Field Value
Gene ID LotjaGi1g1v0601500
Transcript ID LotjaGi1g1v0601500.1
Lotus japonicus genome version Gifu v1.2
Description Ras-related protein Rab-25; TAIR: AT3G12160.1 RAB GTPase homolog A4D; Swiss-Prot: sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d; TrEMBL-Plants: tr|A0A0B2PK85|A0A0B2PK85_GLYSO Ras-related protein RABA4d; Found in the gene: LotjaGi1g1v0601500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:114659207..114661967) extracted from Lotus japonicus Gifu genome v1.2.

TTAGTAACCAACTTTTGCCTCTTTCATTCAATTTGTTTCTCCAACAATTTCATCACGTCTGAATTTCCCAGATCTTCCCA TCTTTGTCTGTTGCCTTTTCTCCACATCCGAATATCTCAGATCTTCCCATCGTTCTGTCTTCAATATCAATTTTCTTGTG TTTTCTTGATCAATCAATGATTAGATGATCGATGATGAAAAGTGATGATCCGATTATATAGCGGCTAATTAAATTGGATG CATGCATGCAGTGGTTGAATTAATTAGAGATTGTGAGAAGAATGTCGAATTTGTATGGCGATTATAACCAGAAGATTGAT TATGTATTCAAGGTGGTTCTGATTGGAGACTCCGCAGTTGGGAAAACTCAGCTCCTTGCTCGGTTTGCTAGGAACGAATT CAGCCTCGATTCCAAGGCCACCATAGGGGTTGAATTTCAGACCAAAACCATCATCGTTGATAATAAAACCATCAAGGCAC AGATATGGGATACAGCTGGTCAAGAAAGGTATGTATGTATGTATTATAATTCAGCCATTTTGATTCATATTGGATCAAAT TCGCAATCCTAAGGGCTGGAGATATGGGTTTGTAGGGTTATGGTTATTGATATGAAATGGGAATACATATTACTGCATAG TTAGTCAATGAGATTAATTAAAATTTTATCATACCCAAGTTAATATTGACAATGTTTGTTTTGTAACTTAATGCGGTAAG GGTTACTATTGAAATTAAAGCATTTAGCCAACTTTGGGTTGACACAACTAGCTACAGGTGTCGGGTTTAACTCTCACCTC CCCATAGGTCGAGGTTTCGAATCCCCCTGCCAAGTAGTCCGGATGTATTTTCTCTCTTTCTCTCGGTTCTACATCGTTGT GAAAAAAATTCAAAAATCGGCTTTGAGAGCCCTTGGCTTGGCGCGGCAAGTCCCTATTCTCTGTGCGTCGGTGTGGCTAT CTTATCCTATTTATTTTTTCCTTCATTTGAAGGAATTTTTTCCGTCTGAATTTTCCACGGAAGCCGGCTCGAAATATTTG ATCTTAGGTGCCTTTATCTTATTTATGGCTCTAATTTTTTAACCATCTATATGGAGATTAACCAGAAAGGGAAGTTCATC TGGTATCTTGCTAGCTTGATCCATAGCAAGTTACCTTCAGTGCCTAGATAGCCACCTTTGCAGGACCATGCAATCAATAT TTGCATTAAGGATTTAGCCATTAAATTTGACCTTATAATATCTGTGCCTTCAGGGTTTTCTGAGAGAGTTTTTTTTTTCT TAAATTATATTGATGCCTTGTGATATAAGTAACCCCAGTGATATTGTCTACTTTTGATTTGGCTTGCTTATACAGTCTAG TTGGATTCTAGCTGGGGGGAAAAATTGTTTACGACCCAATTTCACCTACACTTCAGAAAGATAGATGAACATAAGAGAGA AGAGTGAGAAATATGACGAATAGGAAAATGGGTGGAAAATGGAAATGATATGAGGGAAAATGAGAATTAATGAAACGTTT ACCAGCTTAATGGTTTCTGTCCCATTTCTACTTAATTAGAGCAGAGTTTGGAAGAAATTCCTCTAGGTTATAGTATAAAC AAACACTTACGCATTTATTTGGTTAACTTGTACAAGCAGCTTGTGGCATAGTTATAAGCTCTTATGAACTTATAATTTTG ATCAGTTTTCCTAATTAGCTTAGCTCTTTTAAGCATATTGTAATATGCTTCGCAGAATTAGCTTATAAATAACACTTATA AGAGAAGTGCTTATCTCAATTACTTATTGACATAAGCGCTTAATTAAGATGTATATACAAACACACCTTTAGTCCTTTTA GCATTGCACTAACCGACTTTGAAGCTTTTATTTGCAAATCTGGCCCGTGACGTTTGCTTTCTCTTCTCTCTTTCAGGTAC AGGGCAGTTACTAGTGCATACTATCGAGGCGCCCTTGGGGCAATGTTAGTTTATGACATGACAAAGCGTCAATCGTTCGA TCACATGGCGAGGTGGTTAGAAGAGCTAAGAGGTCACGCTGACAAGAACATTGTGATCATGCTAATTGGCAACAAGTGTG ATCTGGGAAGTCTCAGAGCAGTGCCAACAGAAGATGCAGAGGAATTTGCTCAAAGAGAGAACTTGTTCTTTATGGAGACA TCAGCACTTGAGTCTACTAATGTTGAAACGTGCTTTTTGACTATTCTTACTGAGATATACAGAATTAATGCCAAGAAAAC ACTAACTGTAGGTGATGACCCTGATGGGGGTTCAGGGCTTCTCAAGGGAAGTAGGATAATTGTTCCAAACCAAGAGATGG ATGGTGGTGGAAAGAAGGGTGGGTGCTGTTTTTCCTCCTAGCTTTTGTAACCGTAACCAAATTCTCATTCCACAAGGTGA GGTCAGCTATATGGATGACAGAAAAGATATCGACAAGTTTTAAGTTGGCGGCCTAACACAGTCCTCCTCTTACCTTTTGT ACTATTTCAGATTTTTTCTCACGGGAAGCATATTGCTCATTCAAGTTCTTCCTTTGTAGAATGGGTAATTACTTTTTTAG TGATGATCTCCTCAGCCATCACCCATATTTAGGCTGTGTATTTAAATTTGTTAATACCAATTGGCCCTTCTTCCACACGA TGGTGATCAACAGAAGCTACAGATGTATTTATTGATGAGAAGTAGTTAAATTCTTAATGGTATACTTCTTTTTCTTTGCA ATTCATTCAAATTTAATTAATTTGAGATGAAAATTATAAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0601500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGAATTTGTATGGCGATTATAACCAGAAGATTGATTATGTATTCAAGGTGGTTCTGATTGGAGACTCCGCAGTTGG GAAAACTCAGCTCCTTGCTCGGTTTGCTAGGAACGAATTCAGCCTCGATTCCAAGGCCACCATAGGGGTTGAATTTCAGA CCAAAACCATCATCGTTGATAATAAAACCATCAAGGCACAGATATGGGATACAGCTGGTCAAGAAAGGTACAGGGCAGTT ACTAGTGCATACTATCGAGGCGCCCTTGGGGCAATGTTAGTTTATGACATGACAAAGCGTCAATCGTTCGATCACATGGC GAGGTGGTTAGAAGAGCTAAGAGGTCACGCTGACAAGAACATTGTGATCATGCTAATTGGCAACAAGTGTGATCTGGGAA GTCTCAGAGCAGTGCCAACAGAAGATGCAGAGGAATTTGCTCAAAGAGAGAACTTGTTCTTTATGGAGACATCAGCACTT GAGTCTACTAATGTTGAAACGTGCTTTTTGACTATTCTTACTGAGATATACAGAATTAATGCCAAGAAAACACTAACTGT AGGTGATGACCCTGATGGGGGTTCAGGGCTTCTCAAGGGAAGTAGGATAATTGTTCCAAACCAAGAGATGGATGGTGGTG GAAAGAAGGGTGGGTGCTGTTTTTCCTCCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0601500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSLDSKATIGVEFQTKTIIVDNKTIKAQIWDTAGQERYRAV TSAYYRGALGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAEEFAQRENLFFMETSAL ESTNVETCFLTILTEIYRINAKKTLTVGDDPDGGSGLLKGSRIIVPNQEMDGGGKKGGCCFSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
1 181 181 0.0014 –
PANTHER
PTHR24073:SF970
4 221 218 6.5E-130 –
PANTHER
PTHR24073
4 221 218 6.5E-130 –
ProSiteProfiles
PS51419
11 220 210 35.362 –
SUPERFAMILY
SSF52540
11 182 172 2.48E-58
IPR027417
Gene3D
G3DSA:3.40.50.300
13 191 179 6.1E-66 –
SMART
SM00173
13 179 167 2.8E-23 –
CDD
cd01868
13 177 165 1.31497E-123 –
TIGRFAM
TIGR00231
15 171 157 1.1E-36
IPR005225
PRINTS
PR00449
16 37 22 1.5E-41 –
SMART
SM00175
16 179 164 2.4E-106 –
Pfam
PF00071
17 177 161 4.6E-61
IPR001806
SMART
SM00174
18 175 158 8.3E-11 –
SMART
SM00176
21 213 193 2.3E-5 –
PRINTS
PR00449
39 55 17 1.5E-41 –
PRINTS
PR00449
57 79 23 1.5E-41 –
PRINTS
PR00449
119 132 14 1.5E-41 –
PRINTS
PR00449
154 176 23 1.5E-41 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0601500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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