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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0601700 |
| Transcript ID | LotjaGi1g1v0601700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT2G43890.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P48979|PGLR_PRUPE Polygalacturonase; TrEMBL-Plants: tr|I1J6I6|I1J6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0601700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114666051..114668572) extracted from Lotus japonicus Gifu genome v1.2.
TATACACATTGTTTACTTTCGAAATTAGTTATTATTTTTGGAACATATATACCTAGAAGCCAGAATAATGACTTGTGTTA ATGTTGGAACTATCATCTGGGTATTGTTATGCAACACCTTGCTAGGGTCTTCACTTGGAGCTCCAACCTCTAAATACATT AATGTTGTTAATTTTGGGGCAAAAGCAGGTGGAAAAATTGACTCCACTGAACCATTTATAAAGGCTTGGCAATCAGCATG TACTAGCCTTAGTCCTGCCATTGTTTATGTGCCAAAAGGGAGGTATTTGCTGAGAGCTGCAAATTTCCGAGGTCCATGCA AGAGGAATGTCACATTCCTCATTGATGGAACTCTTGTGGCTCCTGAAGATTACCGGGAAATTGGAAACTCGGGATCTTGG ATTTTGTTCAATCATGTGGAGAATCTCACTATTTCTGGTGGGAACTTGGATGCTAAAGGTGCTGCCTTTTGGAATTGTAG GAGGTCCGGGAAGACCTGCCCGGTTGGAGCAAGGGTATGTTTGATTATATGAGTTTGCATTTCCACACTTTATGGGCAAT TGGATCACATTAAAAACTGATCCGCCATAAAACACGTTTTTACCAATAACATTTAGTAAATGTTATTTATAATATAGTAA TATACTCCTTATGTACTAAAATTAGTGAAGTCTATTTGACTTTTGAACCAAATTTTTCTTGGTGCACAACAAACAAAGTC ATATGCATGAGGGAATTCTACTGTGGGTCATGTTAACAACTAGTCCGCTCGTGAACATGTTTTTACTACTAGCATTTAGT ATATAAGATATTTTCAATGGTTAGAAGTTCTTTTAATTTGTGAATTAGATTTTTATTTGCCACTGAATACATGTGGATAA TTGCAGACAATGACATTCAACTGGGTGAACAACCTGGTGGTTAGTGGCATTAAATCAATCAACAGCCAGCTAAGTCATCT TGTGATCAACACCTGCAACAATGTTCTTGTGAAAAATGTGAGGCTTATTGCACCAGACCAGAGCCCTAACACTGATGGCA TTCATGTTGAACGCTCAACAGGGGTTACCATTAACGGTTGTACCATGAAAACTGGCGATGACTGCATATCCATTGGTGAT GGCACCTACAATCTATTCATGTCCAACATAAAATGTGGCCCCGGCCATGGCGTAAGGTTAGCACCACATGACTAATCTTT TAAAGCTACGTTTATTTAACATGGAGAAATAAACACAAGTACTCCAAATACATATTTGGCTATGAGGTTTTTACATAAAC AGTTACATATGTTTTTAGTACATAAAAAATGGAGTTGAGTTGAGTTTAGTACCAAATCCAATCGTTCATTTGGAAGTACC AAATCCAATTGCTCATATTTTACATGAATTAAAAACACTTAACCCAACAATTTTTCATAAAGTTGAAAACTGATTTTGAA ACCAGAACACCAATAGAAGAGTTTGCTTATTTCAACTTTTCTACAGAAAAAAAAAATCACTTTTATTTAAAAAAAACCTG TACTGTGTTTAATTATTTATGTTATTGAAGAAATCAGAATAAGAAAAAAATAAAAAATAAAAACGTAAAAAGCTTTGAAA TGGTCTTAAAATGGAGATCAATGTATTGTGTATCCCAAAGTAGAAAAATGACAGGTAACAATCTAAAAATGTTTGTCACA CATACAGCATTGGAAGTTTGGGAAAAGAAATTGATGAAAAAGGTGTTAGAAATGTGACTCTAGTGAATTCCATTTTCTTT GGATCGGACAATGGGGTGAGGATAAAGGCTTGGGCTAGACCAAGCAACGGGTTCGTTAGTAACGTTCTCTTCCAAAACAT CTCCATGAACAACGTTGAAAATCCCATCATCATTGATCAGAATTACTGCCCCAATAATCAAGGTTGTCCTCACCAGGTAA TATAATCATAATGAACTAATCAATTATAATTAGATATTGACTATAACTATATTCTGCTCTTTATGATCTACATATTTTTT AAATAACAAATATATTTCATTATTAATGTTTAACAGACTTCAGGAATCAAGATTAGCCAAGTTACTTATAAGAACATAAC TGGAAGTTCAGCAACAGCAGAGGCAGTAACATTTGATTGCAGCCCAAGTAATCCATGCCAAGGGATCACATTGGAGGATA TAAACCTAACCTACAGCAAAAAAACTGTAACATCATCGTGTCACAACGTTGGGGGTACAAGTAGTGGAACATTGGTACCA GAAAGTTGTTTGTAAATGAATAGAGTAAATACATTTATTAATATCTTAACATAAGACACATTTAATTAATATAATTTTCA TGTATTAAAGAGGACTATTACTCTATTAGGAAATTATTCAAAAGGAAATGTTTCAGCTCAATCTTGAAATACAGTTTACG GTTCCCATGGGCCATGAATTCAGTCTATCCCAGTAACCATGTAACATAAAACAGTAACATTTTAGAAAGACAGTTGTTAT TCTGTTTTTTGCTGCAGAACGTAATTATAAAAAGTAATGAGG
CDS sequence (LotjaGi1g1v0601700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGTGTTAATGTTGGAACTATCATCTGGGTATTGTTATGCAACACCTTGCTAGGGTCTTCACTTGGAGCTCCAAC CTCTAAATACATTAATGTTGTTAATTTTGGGGCAAAAGCAGGTGGAAAAATTGACTCCACTGAACCATTTATAAAGGCTT GGCAATCAGCATGTACTAGCCTTAGTCCTGCCATTGTTTATGTGCCAAAAGGGAGGTATTTGCTGAGAGCTGCAAATTTC CGAGGTCCATGCAAGAGGAATGTCACATTCCTCATTGATGGAACTCTTGTGGCTCCTGAAGATTACCGGGAAATTGGAAA CTCGGGATCTTGGATTTTGTTCAATCATGTGGAGAATCTCACTATTTCTGGTGGGAACTTGGATGCTAAAGGTGCTGCCT TTTGGAATTGTAGGAGGTCCGGGAAGACCTGCCCGGTTGGAGCAAGGACAATGACATTCAACTGGGTGAACAACCTGGTG GTTAGTGGCATTAAATCAATCAACAGCCAGCTAAGTCATCTTGTGATCAACACCTGCAACAATGTTCTTGTGAAAAATGT GAGGCTTATTGCACCAGACCAGAGCCCTAACACTGATGGCATTCATGTTGAACGCTCAACAGGGGTTACCATTAACGGTT GTACCATGAAAACTGGCGATGACTGCATATCCATTGGTGATGGCACCTACAATCTATTCATGTCCAACATAAAATGTGGC CCCGGCCATGGCGTAAGCATTGGAAGTTTGGGAAAAGAAATTGATGAAAAAGGTGTTAGAAATGTGACTCTAGTGAATTC CATTTTCTTTGGATCGGACAATGGGGTGAGGATAAAGGCTTGGGCTAGACCAAGCAACGGGTTCGTTAGTAACGTTCTCT TCCAAAACATCTCCATGAACAACGTTGAAAATCCCATCATCATTGATCAGAATTACTGCCCCAATAATCAAGGTTGTCCT CACCAGACTTCAGGAATCAAGATTAGCCAAGTTACTTATAAGAACATAACTGGAAGTTCAGCAACAGCAGAGGCAGTAAC ATTTGATTGCAGCCCAAGTAATCCATGCCAAGGGATCACATTGGAGGATATAAACCTAACCTACAGCAAAAAAACTGTAA CATCATCGTGTCACAACGTTGGGGGTACAAGTAGTGGAACATTGGTACCAGAAAGTTGTTTGTAA
Protein sequence (LotjaGi1g1v0601700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCVNVGTIIWVLLCNTLLGSSLGAPTSKYINVVNFGAKAGGKIDSTEPFIKAWQSACTSLSPAIVYVPKGRYLLRAANF RGPCKRNVTFLIDGTLVAPEDYREIGNSGSWILFNHVENLTISGGNLDAKGAAFWNCRRSGKTCPVGARTMTFNWVNNLV VSGIKSINSQLSHLVINTCNNVLVKNVRLIAPDQSPNTDGIHVERSTGVTINGCTMKTGDDCISIGDGTYNLFMSNIKCG PGHGVSIGSLGKEIDEKGVRNVTLVNSIFFGSDNGVRIKAWARPSNGFVSNVLFQNISMNNVENPIIIDQNYCPNNQGCP HQTSGIKISQVTYKNITGSSATAEAVTFDCSPSNPCQGITLEDINLTYSKKTVTSSCHNVGGTSSGTLVPESCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 13 | 394 | 382 | 2.2E-199 | – | |
| PANTHER | 13 | 394 | 382 | 2.2E-199 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Gene3D | 21 | 392 | 372 | 6.0E-113 | ||
| SUPERFAMILY | 23 | 394 | 372 | 2.51E-115 | ||
| Phobius | 25 | 394 | 370 | - | – | |
| Pfam | 58 | 381 | 324 | 4.8E-92 | ||
| SMART | 179 | 205 | 27 | 76.0 | ||
| SMART | 206 | 227 | 22 | 15.0 | ||
| ProSitePatterns | 236 | 249 | 14 | - | ||
| SMART | 259 | 280 | 22 | 33.0 | ||
| SMART | 289 | 310 | 22 | 4900.0 | ||
| SMART | 323 | 363 | 41 | 7800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0601700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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