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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0602100 |
| Transcript ID | LotjaGi1g1v0602100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; TAIR: AT4G00165.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165; TrEMBL-Plants: tr|I3SA82|I3SA82_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0602100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114709471..114710261) extracted from Lotus japonicus Gifu genome v1.2.
AAATGACAAAAATCAACTAGATCACTATCCATTCATGACACACTCACAGCCACAAGTTCAACAAAGCCTTTAGTCAATTC CTTTCCATAAAACGTAATCCAACTAGAAAATGCAATACCCATATCATTTTCAGTACTAACACTATCCTCTAATCAGATAT CGACCACAGCCCAGTTTAATTTGCTCAAGAAAATGAATCTTTCGGGTTCAAAGGTGTTTTCCACTCTCATACTTGTTAAT TTCCTTTTCTTCTCTTGTGTTGCAGCTAGTAAGCTCCCGTGCCCACCGAAGCAGCAGCAAGCCAAATGCCCCAAAGATAC ACTCAAGTTTGGTGTTTGTGGAAGTTGGTTAGGCCTGGTCACTGAAGTCATTGGGACTAAACCAAGTGAGGAGTGTTGTT CCTTGCTGAAAGGCCTCGCAGATCTTGAAGCAGCATTTTGTCTGTGCACCGCAATTAAGGCCAGCGTGCTGGGAATTGTC AAGCTCAACGTGCCTGTTGCTGTTAGTTTGCTTGTTAATGCTTGTGGGAAGAATGTACCAGAGGGATTTACTTGTGCTTA GAAATACTGCATATATTTCTGTACCTGTCATTGTTGCTTTAAGTTAATGGTAAATCATTAAATACATATTGAACTTTTCT TTCAGGTCAACATTAAAACATTAAGCCATGTGACTTTTTTAAGTGATCATGTGACAATCACATGACCATTAAATTCTTTT AATCTTAATCGTTGATTGTTAGATCTAACGGTCGTGATTTATTCTCATTTTCTCACATAAGATTACCTTTC
CDS sequence (LotjaGi1g1v0602100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTTTCGGGTTCAAAGGTGTTTTCCACTCTCATACTTGTTAATTTCCTTTTCTTCTCTTGTGTTGCAGCTAGTAA GCTCCCGTGCCCACCGAAGCAGCAGCAAGCCAAATGCCCCAAAGATACACTCAAGTTTGGTGTTTGTGGAAGTTGGTTAG GCCTGGTCACTGAAGTCATTGGGACTAAACCAAGTGAGGAGTGTTGTTCCTTGCTGAAAGGCCTCGCAGATCTTGAAGCA GCATTTTGTCTGTGCACCGCAATTAAGGCCAGCGTGCTGGGAATTGTCAAGCTCAACGTGCCTGTTGCTGTTAGTTTGCT TGTTAATGCTTGTGGGAAGAATGTACCAGAGGGATTTACTTGTGCTTAG
Protein sequence (LotjaGi1g1v0602100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSGSKVFSTLILVNFLFFSCVAASKLPCPPKQQQAKCPKDTLKFGVCGSWLGLVTEVIGTKPSEECCSLLKGLADLEA AFCLCTAIKASVLGIVKLNVPVAVSLLVNACGKNVPEGFTCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 122 | 122 | 1.4E-57 | – | |
| PANTHER | 1 | 122 | 122 | 1.4E-57 | – | |
| SignalP_GRAM_POSITIVE | 1 | 37 | 37 | - | – | |
| ProSiteProfiles | 1 | 22 | 22 | 5.0 | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 8 | 20 | 13 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 122 | 97 | - | – | |
| Gene3D | 33 | 122 | 90 | 8.8E-26 | – | |
| CDD | 37 | 121 | 85 | 2.27733E-29 | ||
| Pfam | 38 | 122 | 85 | 3.9E-26 | ||
| SMART | 39 | 121 | 83 | 1.5E-7 | ||
| SUPERFAMILY | 42 | 121 | 80 | 2.63E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0602100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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