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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0606100 |
| Transcript ID | LotjaGi1g1v0606100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT5G14870.1 cyclic nucleotide-gated channel 18; Swiss-Prot: sp|Q9LEQ3|CNG18_ARATH Cyclic nucleotide-gated ion channel 18; TrEMBL-Plants: tr|A0A1J7IQE7|A0A1J7IQE7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115090765..115095696) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTTAGCATCCCTAACCAGCTACGTTCGCGCATTCCCTTCAGTTAACCCGCGAATTTCTCAGCGTTCAAAAATGCCT CACCACCGTCTCTCTCTCTCTTTCTCTCTGTGTCTCTGCAATCTCTTCCCCGTTTCCTTCTCTCTACATTCCCGTTCCCC TTCTCCGCCAAACACAACCCTATTTCCCCGAATCAAACCAACCTCCTCCTCCGCCGTCGACCTAGTTCGGGCGCGGAATC CGTTAACCCCGGAATCCGCCATGGAAGATGTATAGAATACTATCGACGCCGGCGTCAAAGCTCCGCCACTTCCGGCGACT GCGCTCCAGACCCAAAACAGACGAAGAAAACGCGCAGCACATCCTATGGCATTACCAGATCCTCGACCCAGACAGCGACA TTGTTGCTTACTGGAACAAGGTCTTCCTCATCGCCAGCCTTCTCGCGCTCTTCATCGACCCTCTCTACTTCTTCCTCCCC ACCGTCGGCGGCCCTGCTTGCCTCCAGGCCAATCGCAGCCTCGGCCGTTTCCTCAACGTGCTCCGCTCCTTCGCCGACCT CTTCTACCTCCTCCACATGATCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAATTCTAGAATCTTCGGCCGCGGTGACC TCATCATGGATCCCTGGGAAATCGCTTCCCGTTACTTGAGATCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTTTG CCCCAGGCATGAATGCATGTCTTTTTTGAATTAATTGTAGAAAGATTTCGTAATTCTAGCCCTAGAAGCTACTTAGAGAA ACTTGTCCGCAAATGTTGCTTAAGCATATGTGGCAGTACGGGCCCACATAAATAGTGCATGCTCTTAGAGAAACTTCTCG GCGAAATTGATTTTGACTTGTGAATTAATTGTAGAAAGATTTCCAAACACGTGCTGAATTTTTGTCTTTTGCTTAATTTT CCTTGTTGCAGATTGTGATTTGGTTAGTGATTCCGGCGAGTAGAACGGGAACTGATCATACCAACAACACTCTTGCGCTT TTCATTCTTATTCAGTACATTCCTCGATTGTTTCTCATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTAT CGCGAAGACTCCCTGGATTGGAGCCGCCTACAATCTTGTCCTCTACATGCTTGCTAGCCATGTAAGCTCATATTTTGCAC CTTTTGTTGTATCTTCTGCTGTGTGTATTTCTAACTTTCCAGTAATGCTTCATATTGTTATTGTCATTGAGGTTGGTCAG TTTAATGTGTTAAAGATGTTCAATTTAAGTTTTGTGACTGAATATGGTTAAGAAAAGAAGAAGTGTGTGATTGAATACTA ATAGCCTAATAGGTGTAGACTTTCAATTCAATTCATAAGGGCATGGTTCTGACTCATTCCTTTAGCCAATTGAGCTCTTA ATCCATGAGAATTCAAGTATGATTTTTTGATTATTGGAATAGGTATAACTCCCCCCAATTGCATAAAATGGATAACTAAA GACATCCTTAATGATGATTGTCATGTTTTTTGAAGAATTAAATGATGGATTATTCTTTTCCTAAAAAAGAAGAGGAAAAA GATTGTAATTATCATGGTGTATGGCTGTAACAGGTTACAGGAGCAACCTGGTATCTTTCGTCAATAGGGAGACAATTTAA CTGCTGGAAAATGCAGTGCCATGATGAAAATAAATCACATCGCCTGTCTTGCTTGCCTAGTTATCTTGATTGTAATAGTT TGGATCTACCTGAAAGGCAATACTGGCTGAATATCACTCGTGTGGTTAGCAAGTGCGATGCCAAGAGCAAGATCAACATC AAATATAAATTTGGGATGTTTGCAGATGCTTTCCTTAATGATGTTGTCTCTTCCAGTTTTAAGGAAAGATACTTCTATTG TCTGTGGTGGGGTTTAAGAAATTTAAGGTATGTCATTTCTTCTTCTTTATTTTTGAGGTTAGGTATGGCATTTCTTCTTC TTATTCCTACCTTTATGCTACAATTACGTTTTAGGTCTGTTTCTGGAGAGACGTGTTGGATTTTATGTCTTGAACCATGC AGTAATAGATTTACATGAGGAAGTTAGTATAGGAAATCATCATTGCAGACTTGCAGTATAAGTGAAATACCATGAGATAA TTATTTTCACTCTCTCCCACCGTCACCCCTAAGGATTCTTCAAAGTGAATTCATGTGGATGGCTTTAGTTTGTTTTCTAC GAAAAAAAAATTGGGTCAACTTCAAAATCTTGTAAATTTAGGTGTTTTTTTCTTTGTTCTGTTTCTCTTCAAGTCCATTC ATCTCTTTTCCTATTTGGTTATGTTCTACTTAGACTTCTAAATACATTTTGGATACGGTAAGTGGACTATTATATATTAA AACTGGTACATAATTTGTTTTGAAATGAGGAAGTAGAATAATCAATTTACCCTTCCAGCTCTGTTCATTTTTTTATATAA GGACAAGCTACCTATTATATGGTTTGGAACTTAGAAGTAACATCTTGAACTTTTGCTTCATTAACTCCTTTCTTCCGGAG TGACTGGTAAGTGGATATTTAATTAAGGGGCCCGTTGTTTTGAAGTTACGATACACAAATAAATACATAGATATATCTAC TATCTGTTGCATCAATATTGAAGAAATTTTCAGATACAAACTATATTTTGGGATGATAAGAGAATGAACAACAAGTTTTT TTTTCCTGACTTTCACCATAATTTTCATTCTGCCTTATTAGTTTCTTGTAATCATATCTCCCACACTTTATTATTAGATA CTGATTGAGAATTCCTTTCACAGCTCATATGGACAGAATTTGGATACAACAACATACCTTGTGGAGACCTGTTTTTGCAT CATCTTATGTATTGCTGGATTAGTTCTTTTTTCACTTTTGATTGGAAACTTTCAGGTAAAACTTTAAGAGAACACTATTG GTTCATCATATAAATAAATGTGATATAGTTGGTGGGTTACTTGGACCAAACTGAATTGGAATGTGATTGAAATACTGATT TTTGGTTTTTGTTTTTTATTTCCCTTGTCGAAGACGTACTTGTCATCGATGTCTATTAGACTAGAAGAGTGGAGGATCAG GAAAAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCAAGATTTGCAAGCACGTGTCCGGCGCTTTGTTCAAT ATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAAGCCTTACTGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAA CATCACTTGTGTCTTTCTCTTGTGCGGCGTGTATGTCTCTCTACCTTAGCCCATCTTTCGTTCGTAGTTTATCTAACAGT GTTACTGTATGTCTCTCTCTCTCTCTCTACCTTGTCATATCTTTCTTGTGTATTTTATCTAACATTGTTACATGGTAATG CAATAACTTTGAAGGTAAGAGTTATCTGCTACCCATTGAAATGAGAACGTTTATATAAGTGGATACACTGACTAGTCATT AGTATCTCATATAACTTTTTTTCTATTTAAGTGGATATAATGTGCTCTTAAAAATTTAAAGTAGTGTATAATCTTTTTTA ATATGTTTTTTTTATGCATTCGCAACCACTTTCTCATCCATCCAAATTTCACCTCTTTTATCTTTCTCTTTTCTATCACA TCACCTATCAAAGCTCTTAATTTTCTCTTTTTTCTTTCATTCTCACTCTAGGTGTGAGTGGAAGTGGAACGTCAATATAA CATTACTGTTCCTTTAATGCAAAAGTCACAATGTCTCCCATTTCAATGGTTACTAGTGGAGCACCGTCAATTAGTTAATA TGCGGTTAAAAAAGCAAATTACATTGTATTTATTGGTTGTAAAACTTCACCTGATGTTCCTCCCCTCCTTAATTTGTATA GGTACCTTTCTTCTCACAAATGGACGATCAGCTCCTTGATGCCATTTGTGAACGCCTTGTGTCATCATTAAGCACCCAAG GAACCTACATATTTCGAGAGGGCGATCCAGTGGATGAAATGCTGTTCATCATTAGAGGGCAATTGGAGAGCTCTACAACA AATGGAGGAAAGTATGGATTCTTCAATTCCATTACACTCAGGCCTGGTGACTTCTGTGGAGAGGAATTGTTGACATGGGC CTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCCACTCGTACAGTCAAGGCTCTCACTGAAGTAGAAGCTTTCGCGC TACAGGCAGAGGATCTGAAATTTGTGGCGAGTCAGTTCAAGCGCCTCCACAGCAAGAAACTTCAGCACGCTTTTAGGTTT TATTCCCATCAATGGAGGACATGGGGTTGTTGCTTCATACAAGTTGCCTGGAGAAGGTATCAGAAGAGGAAGGCATCAAG GGAGTTATCACTAAGAGAGAGGCTTTACATGGCAGAGCCTGCTACACAGAATGATTATTACATGGGAAGGTATGAAAGTG AAGATTACGAGGATACGGTCGGGGAATCATCATCAGCGGATGGGAAAAAGGTTCAAAATCTCGGTGCAACTGTTTTGGCC TCAAGGTTTGCTACCAATACAAAGAAAGGGAACCATAAGCTTCAAGGTGGTGATCCTGTGCCCCAATTGTTCAAGCCAGA CGAACCTGATTTCTCCATGGACCATGATGATGTTTAGTGAGTACAAGAATCAATCAACAGCTGAAAAATGAGTTTAACTT TGTTTAAATAGGAAGTTTTATGACATGGATGTAAATGTTATTGATAGATTAGAAATTGTGATCACGTTCTTTATTCTTTG CCTTAAACGAATTCTCATTTCACATATGGCATAGCATATATACATAGGACACTAAAACCCATTCTTGCGGGTAGTGTTTC TTTTATCGGAAATGATTGGTGAACATGCATACTTGGACAACAACATTCCGAC
CDS sequence (LotjaGi1g1v0606100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCTAGCCATGTTACAGGAGCAACCTGGTATCTTTCGTCAATAGGGAGACAATTTAACTGCTGGAAAATGCAGTG CCATGATGAAAATAAATCACATCGCCTGTCTTGCTTGCCTAGTTATCTTGATTGTAATAGTTTGGATCTACCTGAAAGGC AATACTGGCTGAATATCACTCGTGTGGTTAGCAAGTGCGATGCCAAGAGCAAGATCAACATCAAATATAAATTTGGGATG TTTGCAGATGCTTTCCTTAATGATGTTGTCTCTTCCAGTTTTAAGGAAAGATACTTCTATTGTCTGTGGTGGGGTTTAAG AAATTTAAGCTCATATGGACAGAATTTGGATACAACAACATACCTTGTGGAGACCTGTTTTTGCATCATCTTATGTATTG CTGGATTAGTTCTTTTTTCACTTTTGATTGGAAACTTTCAGACGTACTTGTCATCGATGTCTATTAGACTAGAAGAGTGG AGGATCAGGAAAAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCAAGATTTGCAAGCACGTGTCCGGCGCTT TGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAAGCCTTACTGCTTTCGTTACCTTTGGATCTTCGTCGAG AAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTACCTTTCTTCTCACAAATGGACGATCAGCTCCTTGATGCC ATTTGTGAACGCCTTGTGTCATCATTAAGCACCCAAGGAACCTACATATTTCGAGAGGGCGATCCAGTGGATGAAATGCT GTTCATCATTAGAGGGCAATTGGAGAGCTCTACAACAAATGGAGGAAAGTATGGATTCTTCAATTCCATTACACTCAGGC CTGGTGACTTCTGTGGAGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCCACTCGT ACAGTCAAGGCTCTCACTGAAGTAGAAGCTTTCGCGCTACAGGCAGAGGATCTGAAATTTGTGGCGAGTCAGTTCAAGCG CCTCCACAGCAAGAAACTTCAGCACGCTTTTAGGTTTTATTCCCATCAATGGAGGACATGGGGTTGTTGCTTCATACAAG TTGCCTGGAGAAGGTATCAGAAGAGGAAGGCATCAAGGGAGTTATCACTAAGAGAGAGGCTTTACATGGCAGAGCCTGCT ACACAGAATGATTATTACATGGGAAGGTATGAAAGTGAAGATTACGAGGATACGGTCGGGGAATCATCATCAGCGGATGG GAAAAAGGTTCAAAATCTCGGTGCAACTGTTTTGGCCTCAAGGTTTGCTACCAATACAAAGAAAGGGAACCATAAGCTTC AAGGTGGTGATCCTGTGCCCCAATTGTTCAAGCCAGACGAACCTGATTTCTCCATGGACCATGATGATGTTTAG
Protein sequence (LotjaGi1g1v0606100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLASHVTGATWYLSSIGRQFNCWKMQCHDENKSHRLSCLPSYLDCNSLDLPERQYWLNITRVVSKCDAKSKINIKYKFGM FADAFLNDVVSSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLVETCFCIILCIAGLVLFSLLIGNFQTYLSSMSIRLEEW RIRKRDTEEWMRHRQLPQDLQARVRRFVQYKWLATRGVNEEALLLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDA ICERLVSSLSTQGTYIFREGDPVDEMLFIIRGQLESSTTNGGKYGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTR TVKALTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRFYSHQWRTWGCCFIQVAWRRYQKRKASRELSLRERLYMAEPA TQNDYYMGRYESEDYEDTVGESSSADGKKVQNLGATVLASRFATNTKKGNHKLQGGDPVPQLFKPDEPDFSMDHDDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 120 | 120 | - | – | |
| PANTHER | 1 | 474 | 474 | 3.5E-279 | – | |
| Pfam | 1 | 154 | 154 | 1.2E-7 | ||
| PANTHER | 1 | 474 | 474 | 3.5E-279 | – | |
| SUPERFAMILY | 91 | 192 | 102 | 9.16E-12 | – | |
| Phobius | 121 | 146 | 26 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 147 | 477 | 331 | - | – | |
| Gene3D | 152 | 220 | 69 | 5.1E-14 | – | |
| SUPERFAMILY | 159 | 354 | 196 | 1.1E-38 | ||
| Gene3D | 227 | 347 | 121 | 2.7E-40 | ||
| SMART | 229 | 360 | 132 | 1.0E-12 | ||
| CDD | 229 | 360 | 132 | 2.37326E-20 | ||
| ProSiteProfiles | 229 | 359 | 131 | 11.902 | ||
| Pfam | 252 | 340 | 89 | 7.1E-10 | ||
| MobiDBLite | 446 | 477 | 32 | - | – | |
| Coils | 477 | 477 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0606100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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