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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0606100 |
| Transcript ID | LotjaGi1g1v0606100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT5G14870.1 cyclic nucleotide-gated channel 18; Swiss-Prot: sp|Q9LEQ3|CNG18_ARATH Cyclic nucleotide-gated ion channel 18; TrEMBL-Plants: tr|I1K949|I1K949_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115090880..115095811) extracted from Lotus japonicus Gifu genome v1.2.
CTGCAATCTCTTCCCCGTTTCCTTCTCTCTACATTCCCGTTCCCCTTCTCCGCCAAACACAACCCTATTTCCCCGAATCA AACCAACCTCCTCCTCCGCCGTCGACCTAGTTCGGGCGCGGAATCCGTTAACCCCGGAATCCGCCATGGAAGATGTATAG AATACTATCGACGCCGGCGTCAAAGCTCCGCCACTTCCGGCGACTGCGCTCCAGACCCAAAACAGACGAAGAAAACGCGC AGCACATCCTATGGCATTACCAGATCCTCGACCCAGACAGCGACATTGTTGCTTACTGGAACAAGGTCTTCCTCATCGCC AGCCTTCTCGCGCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTCGGCGGCCCTGCTTGCCTCCAGGCCAATCG CAGCCTCGGCCGTTTCCTCAACGTGCTCCGCTCCTTCGCCGACCTCTTCTACCTCCTCCACATGATCATGAAGTTCCGCA CCGCCTTCGTCGCCCCCAATTCTAGAATCTTCGGCCGCGGTGACCTCATCATGGATCCCTGGGAAATCGCTTCCCGTTAC TTGAGATCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTTTGCCCCAGGCATGAATGCATGTCTTTTTTGAATTAAT TGTAGAAAGATTTCGTAATTCTAGCCCTAGAAGCTACTTAGAGAAACTTGTCCGCAAATGTTGCTTAAGCATATGTGGCA GTACGGGCCCACATAAATAGTGCATGCTCTTAGAGAAACTTCTCGGCGAAATTGATTTTGACTTGTGAATTAATTGTAGA AAGATTTCCAAACACGTGCTGAATTTTTGTCTTTTGCTTAATTTTCCTTGTTGCAGATTGTGATTTGGTTAGTGATTCCG GCGAGTAGAACGGGAACTGATCATACCAACAACACTCTTGCGCTTTTCATTCTTATTCAGTACATTCCTCGATTGTTTCT CATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATCGCGAAGACTCCCTGGATTGGAGCCGCCTACAATC TTGTCCTCTACATGCTTGCTAGCCATGTAAGCTCATATTTTGCACCTTTTGTTGTATCTTCTGCTGTGTGTATTTCTAAC TTTCCAGTAATGCTTCATATTGTTATTGTCATTGAGGTTGGTCAGTTTAATGTGTTAAAGATGTTCAATTTAAGTTTTGT GACTGAATATGGTTAAGAAAAGAAGAAGTGTGTGATTGAATACTAATAGCCTAATAGGTGTAGACTTTCAATTCAATTCA TAAGGGCATGGTTCTGACTCATTCCTTTAGCCAATTGAGCTCTTAATCCATGAGAATTCAAGTATGATTTTTTGATTATT GGAATAGGTATAACTCCCCCCAATTGCATAAAATGGATAACTAAAGACATCCTTAATGATGATTGTCATGTTTTTTGAAG AATTAAATGATGGATTATTCTTTTCCTAAAAAAGAAGAGGAAAAAGATTGTAATTATCATGGTGTATGGCTGTAACAGGT TACAGGAGCAACCTGGTATCTTTCGTCAATAGGGAGACAATTTAACTGCTGGAAAATGCAGTGCCATGATGAAAATAAAT CACATCGCCTGTCTTGCTTGCCTAGTTATCTTGATTGTAATAGTTTGGATCTACCTGAAAGGCAATACTGGCTGAATATC ACTCGTGTGGTTAGCAAGTGCGATGCCAAGAGCAAGATCAACATCAAATATAAATTTGGGATGTTTGCAGATGCTTTCCT TAATGATGTTGTCTCTTCCAGTTTTAAGGAAAGATACTTCTATTGTCTGTGGTGGGGTTTAAGAAATTTAAGGTATGTCA TTTCTTCTTCTTTATTTTTGAGGTTAGGTATGGCATTTCTTCTTCTTATTCCTACCTTTATGCTACAATTACGTTTTAGG TCTGTTTCTGGAGAGACGTGTTGGATTTTATGTCTTGAACCATGCAGTAATAGATTTACATGAGGAAGTTAGTATAGGAA ATCATCATTGCAGACTTGCAGTATAAGTGAAATACCATGAGATAATTATTTTCACTCTCTCCCACCGTCACCCCTAAGGA TTCTTCAAAGTGAATTCATGTGGATGGCTTTAGTTTGTTTTCTACGAAAAAAAAATTGGGTCAACTTCAAAATCTTGTAA ATTTAGGTGTTTTTTTCTTTGTTCTGTTTCTCTTCAAGTCCATTCATCTCTTTTCCTATTTGGTTATGTTCTACTTAGAC TTCTAAATACATTTTGGATACGGTAAGTGGACTATTATATATTAAAACTGGTACATAATTTGTTTTGAAATGAGGAAGTA GAATAATCAATTTACCCTTCCAGCTCTGTTCATTTTTTTATATAAGGACAAGCTACCTATTATATGGTTTGGAACTTAGA AGTAACATCTTGAACTTTTGCTTCATTAACTCCTTTCTTCCGGAGTGACTGGTAAGTGGATATTTAATTAAGGGGCCCGT TGTTTTGAAGTTACGATACACAAATAAATACATAGATATATCTACTATCTGTTGCATCAATATTGAAGAAATTTTCAGAT ACAAACTATATTTTGGGATGATAAGAGAATGAACAACAAGTTTTTTTTTCCTGACTTTCACCATAATTTTCATTCTGCCT TATTAGTTTCTTGTAATCATATCTCCCACACTTTATTATTAGATACTGATTGAGAATTCCTTTCACAGCTCATATGGACA GAATTTGGATACAACAACATACCTTGTGGAGACCTGTTTTTGCATCATCTTATGTATTGCTGGATTAGTTCTTTTTTCAC TTTTGATTGGAAACTTTCAGGTAAAACTTTAAGAGAACACTATTGGTTCATCATATAAATAAATGTGATATAGTTGGTGG GTTACTTGGACCAAACTGAATTGGAATGTGATTGAAATACTGATTTTTGGTTTTTGTTTTTTATTTCCCTTGTCGAAGAC GTACTTGTCATCGATGTCTATTAGACTAGAAGAGTGGAGGATCAGGAAAAGAGACACTGAGGAGTGGATGAGGCATCGCC AGTTACCTCAAGATTTGCAAGCACGTGTCCGGCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAA GCCTTACTGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTATG TCTCTCTACCTTAGCCCATCTTTCGTTCGTAGTTTATCTAACAGTGTTACTGTATGTCTCTCTCTCTCTCTCTACCTTGT CATATCTTTCTTGTGTATTTTATCTAACATTGTTACATGGTAATGCAATAACTTTGAAGGTAAGAGTTATCTGCTACCCA TTGAAATGAGAACGTTTATATAAGTGGATACACTGACTAGTCATTAGTATCTCATATAACTTTTTTTCTATTTAAGTGGA TATAATGTGCTCTTAAAAATTTAAAGTAGTGTATAATCTTTTTTAATATGTTTTTTTTATGCATTCGCAACCACTTTCTC ATCCATCCAAATTTCACCTCTTTTATCTTTCTCTTTTCTATCACATCACCTATCAAAGCTCTTAATTTTCTCTTTTTTCT TTCATTCTCACTCTAGGTGTGAGTGGAAGTGGAACGTCAATATAACATTACTGTTCCTTTAATGCAAAAGTCACAATGTC TCCCATTTCAATGGTTACTAGTGGAGCACCGTCAATTAGTTAATATGCGGTTAAAAAAGCAAATTACATTGTATTTATTG GTTGTAAAACTTCACCTGATGTTCCTCCCCTCCTTAATTTGTATAGGTACCTTTCTTCTCACAAATGGACGATCAGCTCC TTGATGCCATTTGTGAACGCCTTGTGTCATCATTAAGCACCCAAGGAACCTACATATTTCGAGAGGGCGATCCAGTGGAT GAAATGCTGTTCATCATTAGAGGGCAATTGGAGAGCTCTACAACAAATGGAGGAAAGTATGGATTCTTCAATTCCATTAC ACTCAGGCCTGGTGACTTCTGTGGAGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTT CCACTCGTACAGTCAAGGCTCTCACTGAAGTAGAAGCTTTCGCGCTACAGGCAGAGGATCTGAAATTTGTGGCGAGTCAG TTCAAGCGCCTCCACAGCAAGAAACTTCAGCACGCTTTTAGGTTTTATTCCCATCAATGGAGGACATGGGGTTGTTGCTT CATACAAGTTGCCTGGAGAAGGTATCAGAAGAGGAAGGCATCAAGGGAGTTATCACTAAGAGAGAGGCTTTACATGGCAG AGCCTGCTACACAGAATGATTATTACATGGGAAGGTATGAAAGTGAAGATTACGAGGATACGGTCGGGGAATCATCATCA GCGGATGGGAAAAAGGTTCAAAATCTCGGTGCAACTGTTTTGGCCTCAAGGTTTGCTACCAATACAAAGAAAGGGAACCA TAAGCTTCAAGGTGGTGATCCTGTGCCCCAATTGTTCAAGCCAGACGAACCTGATTTCTCCATGGACCATGATGATGTTT AGTGAGTACAAGAATCAATCAACAGCTGAAAAATGAGTTTAACTTTGTTTAAATAGGAAGTTTTATGACATGGATGTAAA TGTTATTGATAGATTAGAAATTGTGATCACGTTCTTTATTCTTTGCCTTAAACGAATTCTCATTTCACATATGGCATAGC ATATATACATAGGACACTAAAACCCATTCTTGCGGGTAGTGTTTCTTTTATCGGAAATGATTGGTGAACATGCATACTTG GACAACAACATTCCGACAAACGCATTAGTGTAGGTTTTAAACTGTCGCAAATTTTTATGGAGGTTAAAAACTGTCACTTA TGAGTTTGTCAGAGACATAATGCCTATGTATAAGAACTCTTCTTTTATAAGC
CDS sequence (LotjaGi1g1v0606100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGAATACTATCGACGCCGGCGTCAAAGCTCCGCCACTTCCGGCGACTGCGCTCCAGACCCAAAACAGACGAAGA AAACGCGCAGCACATCCTATGGCATTACCAGATCCTCGACCCAGACAGCGACATTGTTGCTTACTGGAACAAGGTCTTCC TCATCGCCAGCCTTCTCGCGCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTCGGCGGCCCTGCTTGCCTCCAG GCCAATCGCAGCCTCGGCCGTTTCCTCAACGTGCTCCGCTCCTTCGCCGACCTCTTCTACCTCCTCCACATGATCATGAA GTTCCGCACCGCCTTCGTCGCCCCCAATTCTAGAATCTTCGGCCGCGGTGACCTCATCATGGATCCCTGGGAAATCGCTT CCCGTTACTTGAGATCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTTTGCCCCAGATTGTGATTTGGTTAGTGATT CCGGCGAGTAGAACGGGAACTGATCATACCAACAACACTCTTGCGCTTTTCATTCTTATTCAGTACATTCCTCGATTGTT TCTCATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATCGCGAAGACTCCCTGGATTGGAGCCGCCTACA ATCTTGTCCTCTACATGCTTGCTAGCCATGTTACAGGAGCAACCTGGTATCTTTCGTCAATAGGGAGACAATTTAACTGC TGGAAAATGCAGTGCCATGATGAAAATAAATCACATCGCCTGTCTTGCTTGCCTAGTTATCTTGATTGTAATAGTTTGGA TCTACCTGAAAGGCAATACTGGCTGAATATCACTCGTGTGGTTAGCAAGTGCGATGCCAAGAGCAAGATCAACATCAAAT ATAAATTTGGGATGTTTGCAGATGCTTTCCTTAATGATGTTGTCTCTTCCAGTTTTAAGGAAAGATACTTCTATTGTCTG TGGTGGGGTTTAAGAAATTTAAGCTCATATGGACAGAATTTGGATACAACAACATACCTTGTGGAGACCTGTTTTTGCAT CATCTTATGTATTGCTGGATTAGTTCTTTTTTCACTTTTGATTGGAAACTTTCAGACGTACTTGTCATCGATGTCTATTA GACTAGAAGAGTGGAGGATCAGGAAAAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCAAGATTTGCAAGCA CGTGTCCGGCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAAGCCTTACTGCTTTCGTTACCTTT GGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTACCTTTCTTCTCACAAATGGACGATC AGCTCCTTGATGCCATTTGTGAACGCCTTGTGTCATCATTAAGCACCCAAGGAACCTACATATTTCGAGAGGGCGATCCA GTGGATGAAATGCTGTTCATCATTAGAGGGCAATTGGAGAGCTCTACAACAAATGGAGGAAAGTATGGATTCTTCAATTC CATTACACTCAGGCCTGGTGACTTCTGTGGAGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTAC CTTCTTCCACTCGTACAGTCAAGGCTCTCACTGAAGTAGAAGCTTTCGCGCTACAGGCAGAGGATCTGAAATTTGTGGCG AGTCAGTTCAAGCGCCTCCACAGCAAGAAACTTCAGCACGCTTTTAGGTTTTATTCCCATCAATGGAGGACATGGGGTTG TTGCTTCATACAAGTTGCCTGGAGAAGGTATCAGAAGAGGAAGGCATCAAGGGAGTTATCACTAAGAGAGAGGCTTTACA TGGCAGAGCCTGCTACACAGAATGATTATTACATGGGAAGGTATGAAAGTGAAGATTACGAGGATACGGTCGGGGAATCA TCATCAGCGGATGGGAAAAAGGTTCAAAATCTCGGTGCAACTGTTTTGGCCTCAAGGTTTGCTACCAATACAAAGAAAGG GAACCATAAGCTTCAAGGTGGTGATCCTGTGCCCCAATTGTTCAAGCCAGACGAACCTGATTTCTCCATGGACCATGATG ATGTTTAG
Protein sequence (LotjaGi1g1v0606100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYRILSTPASKLRHFRRLRSRPKTDEENAQHILWHYQILDPDSDIVAYWNKVFLIASLLALFIDPLYFFLPTVGGPACLQ ANRSLGRFLNVLRSFADLFYLLHMIMKFRTAFVAPNSRIFGRGDLIMDPWEIASRYLRSDFVIDLAATIPLPQIVIWLVI PASRTGTDHTNNTLALFILIQYIPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNC WKMQCHDENKSHRLSCLPSYLDCNSLDLPERQYWLNITRVVSKCDAKSKINIKYKFGMFADAFLNDVVSSSFKERYFYCL WWGLRNLSSYGQNLDTTTYLVETCFCIILCIAGLVLFSLLIGNFQTYLSSMSIRLEEWRIRKRDTEEWMRHRQLPQDLQA RVRRFVQYKWLATRGVNEEALLLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFREGDP VDEMLFIIRGQLESSTTNGGKYGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALTEVEAFALQAEDLKFVA SQFKRLHSKKLQHAFRFYSHQWRTWGCCFIQVAWRRYQKRKASRELSLRERLYMAEPATQNDYYMGRYESEDYEDTVGES SSADGKKVQNLGATVLASRFATNTKKGNHKLQGGDPVPQLFKPDEPDFSMDHDDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | - | – | |
| PANTHER | 14 | 692 | 679 | 0.0 | – | |
| PANTHER | 14 | 692 | 679 | 0.0 | – | |
| SUPERFAMILY | 40 | 369 | 330 | 3.92E-28 | – | |
| Pfam | 48 | 372 | 325 | 5.2E-25 | ||
| Phobius | 52 | 70 | 19 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| Phobius | 90 | 108 | 19 | - | – | |
| Phobius | 109 | 140 | 32 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| TMHMM | 141 | 160 | 20 | - | – | |
| Phobius | 161 | 171 | 11 | - | – | |
| Phobius | 172 | 190 | 19 | - | – | |
| TMHMM | 173 | 192 | 20 | - | – | |
| Phobius | 191 | 210 | 20 | - | – | |
| Phobius | 211 | 231 | 21 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 232 | 338 | 107 | - | – | |
| Phobius | 339 | 364 | 26 | - | – | |
| TMHMM | 339 | 361 | 23 | - | – | |
| Phobius | 365 | 695 | 331 | - | – | |
| Gene3D | 370 | 438 | 69 | 8.5E-14 | – | |
| SUPERFAMILY | 377 | 572 | 196 | 2.36E-38 | ||
| Gene3D | 445 | 565 | 121 | 5.0E-40 | ||
| SMART | 447 | 578 | 132 | 1.0E-12 | ||
| ProSiteProfiles | 447 | 577 | 131 | 11.902 | ||
| CDD | 447 | 578 | 132 | 1.00024E-19 | ||
| Pfam | 470 | 558 | 89 | 1.3E-9 | ||
| MobiDBLite | 664 | 695 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0606100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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