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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0611800 |
| Transcript ID | LotjaGi1g1v0611800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA-processing protein 8; TAIR: AT5G40530.4 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8; TrEMBL-Plants: tr|I3T493|I3T493_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0611800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115710937..115713952) extracted from Lotus japonicus Gifu genome v1.2.
TCGAAGCGTTTAACAATTTCATTCATTCAGAATTCTAAGTTCTAACAATGACGAACAGCGAGGTTCGCAGCAAAAAACGC AAGAAATCCAGCAAACACCATGCACCAAACAACAACCACCATGGCGATGAAGAGCAAGAGCTTCCTTCTTCAGATTCTGC TAAGCGTGCAAAGTCCAGCAAACCCTCCAAGCCTTCTGGGTTTCTGGAAAAGGCATGGCCTACCCCAGCTTCTCTTTTGT TCAATGCTTCGATCTTTCACTTCACATGGAAAGTTTGGTCTGAGTTTTTGAGATTTAATCAGTTTTTTTTTCAGATGCGG GCGAGGTTGTCTGGTGGGCATTTCAGGATGCTGAACGAGAAGCTATACACTTGCACGTATGTTGTTGTGTACCAATCATT AATCCAATTGTTATTGCTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTGTTTTGTTTTGTCCCCCGTTTTTCCTGAATTTT AAATTTGGATACTGAAAATTCTGCATTGGAAACTCAATAATTTGGCTTCTTTATGTGATTTGGGGGGTGAATTGGAAAGA AGGTTTTTTAGTTTTGTGGATGTTCATATCCAAATGGGATTGACTAGTGGTCTTGTTAGAGTCTTTTTGGTTTTGTTTTA GCTATTAAGGATTAGTTTAGATAATCCAATGACCCGAGTTGTGCATTGTTTTTCTTTTCTTTTCTTGTGATTACTTTTCG TCTTGACTAGTTAAGAATCTGTGTTATTCTTTTCAGTGGGAAGGAGGCGCTAGATTATTTCCAGGAAGATCCGTCCCTGT TTAACTTGGTGAGAGTTGTTTTCGTCGTCAATTTTTTTTTCTTCGAATTCTAGTGTCATTAGGCATGGCTTAAAGTCAGA ATTATGGTGTTGATTTGGTTCATGTAACTTCCCCTTTACTAGAAGGATAGGATTTTTGTTGTTGTTGTTGTTGTTGTATA GTGTCATTGTTTCTGGTATGATAAAACCAGAGTTGGTTGATACTCAAAAACATTAAACTCAAAAGTTATAGCACATGTAG GCTCGTTGAGGTTTGAAGGACCAGCATTTGTGGTTTCAACTACAAATATGCATATTGTTAAAGATAAATTCAGATTCAGA AATGTACCCTGGAGAGTTAGAGTTAGAATTCATGAGAGACATATGGTTTAGGTCTTGTCTAGTGTTTCTTGCTAGACTGG TGACTGAGGTCTGTAACGTCTTACATATTAATCTATGGGCATGTATTATAATGGTTTGAAATAGCTGTTCTTATTGGCCA TCTCAATTTATCTTTCATATATCTGGCTAGTATCATGCAGGATATCAAACACAAATGTCGAATTGGCCTGAACAGCCGGT TAATGTAATTATTAAGTGGTTGAGAAAACAGAACCCATCTTTTGTTGTTGCTGACTTTGGTTGTGGTGAGAATTTACTGT GATTTTATTGTTATTTTACTTTGTTGTCTGACTTACACACAGCTAATGCTTTCATGTTTCCATTCCATTCTAGGGGAAGC ACTCATTGCTAATAGTGTGAAGAATACTGTCTTCTCTCTGGATCTTGTCTCTAATGATCCAAAAGTAATTGCTTGTGACA TGGCAAATGTATGTCCTTCTACTTGTAAGGCTATCGTTCTGTGTAAATGTTGGAAAGTTACTTCTGTAGCACTGGACAAT CACAGTAGTTATAATATTTCTTGCCCTTGCCTTCATAATCAGATTTTGGTTACTTTTAGTTTTAGTCATGAAGAGTGGGT GCTAATCAAAAGGAGGAAAAAAAATTCAGTAGTTTCCATGCAAATTCCAATAATTTCAAAATGCAAAGCCCATAATGGAG AACAATGTCTAAGTTATATTGTAGATTTATGGTTAGATTACTTAAACAAGGGTCCCGTCTGGAAGAGCTTATTTGAGCTT ATCCGGCATAAAGCGCTTATGCAAGTGTTTGAGAGAGCTTATGTAAATAGCTTTTGACTTATCTATAAGCCGTTTTGAGC TTATTTTCATAAGCTGTTCAGAATTCAGATTTGCTTATGAATAAGCGGTTATGCCTGCCTGTAATTTATTTTCATCTTAT TTCAATAATTTTCTCAAATTATCTTAGAATACTGCTTATGCGATAAGCTTTTATTGTTATAAGCCCTTAATTAAGTTGTT TAAAAAAAGCAGTCATTCTCACTATGTAAATTACTAACAGGCTCCCATTGTCTCGTCATCTGTTGATGTTGCTGTCTTCT GTCTTTCATTGATGGGAACCAACTACCAAAGTTACATTCAAGAAGCATACAGGGTACTTAAACCAGGGTATGCATTTCGG TGTGCTTTTAAGCTTTTAGAACTTGACACTGCTTCCTAATCAGGTTCTGACTTGGTATAGTTTTGAACAGTGGGTGGCTT CTGATAGCAGAAGTTAAGAGTAGGTTTGATCCAAATACTGGAGGAGCAGATCCAGAAAAGTTCTCAAAGGCTATTTTGGA GCTAGGTTTCAACTCTGTGAAACAGGTATTTAGATGTTCCATTTCTTTACCTTGATAAATGTACAGTTGAGTTTGCTAAC TGATATTTACACAATGCAGGACTTCTCCAATAAGATGTTTATTTTGTTTTACTTCACAAAAAAGGTATGTCTCGAATCGC AGTGAATCTGATTCTATTTTTCTCATTTGTTATTATGTTATCTGCAAATCTTTCCCTCACCGCTGATTTAGCTTTTCTTG GTGTAGGAAAAGAAAAATTCTAAAAAGAACATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTCGTTAGGATAA TGGGAAATTTTCATTATTTTTCCTCAATTGTTGTCTTCACGAAAGTTAATTATATTTCTTTCATGTTAGCATGGCTAGTT AGTTCTTGTGTCCCCCGTTTATTCTTTTATTTTAAATGCATATTAGGAGTTACACCTGGTTTACAAATTGACTATGACTA CCTAATATCCGAGGGATTTACTTCACTTCAAATATTGTTTTTCTTTGGTTTGTTAA
CDS sequence (LotjaGi1g1v0611800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAACAGCGAGGTTCGCAGCAAAAAACGCAAGAAATCCAGCAAACACCATGCACCAAACAACAACCACCATGGCGA TGAAGAGCAAGAGCTTCCTTCTTCAGATTCTGCTAAGCGTGCAAAGTCCAGCAAACCCTCCAAGCCTTCTGGGTTTCTGG AAAAGATGCGGGCGAGGTTGTCTGGTGGGCATTTCAGGATGCTGAACGAGAAGCTATACACTTGCACTGGGAAGGAGGCG CTAGATTATTTCCAGGAAGATCCGTCCCTGTTTAACTTGTATCATGCAGGATATCAAACACAAATGTCGAATTGGCCTGA ACAGCCGGTTAATGTAATTATTAAGTGGTTGAGAAAACAGAACCCATCTTTTGTTGTTGCTGACTTTGGTTGTGGGGAAG CACTCATTGCTAATAGTGTGAAGAATACTGTCTTCTCTCTGGATCTTGTCTCTAATGATCCAAAAGTAATTGCTTGTGAC ATGGCAAATGCTCCCATTGTCTCGTCATCTGTTGATGTTGCTGTCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAG TTACATTCAAGAAGCATACAGGGTACTTAAACCAGGTGGGTGGCTTCTGATAGCAGAAGTTAAGAGTAGGTTTGATCCAA ATACTGGAGGAGCAGATCCAGAAAAGTTCTCAAAGGCTATTTTGGAGCTAGGTTTCAACTCTGTGAAACAGGACTTCTCC AATAAGATGTTTATTTTGTTTTACTTCACAAAAAAGGTATGTCTCGAATCGCAGTGA
Protein sequence (LotjaGi1g1v0611800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNSEVRSKKRKKSSKHHAPNNNHHGDEEQELPSSDSAKRAKSSKPSKPSGFLEKMRARLSGGHFRMLNEKLYTCTGKEA LDYFQEDPSLFNLYHAGYQTQMSNWPEQPVNVIIKWLRKQNPSFVVADFGCGEALIANSVKNTVFSLDLVSNDPKVIACD MANAPIVSSSVDVAVFCLSLMGTNYQSYIQEAYRVLKPGGWLLIAEVKSRFDPNTGGADPEKFSKAILELGFNSVKQDFS NKMFILFYFTKKVCLESQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 9 | 252 | 244 | 2.7E-109 | ||
| MobiDBLite | 20 | 43 | 24 | - | – | |
| Pfam | 54 | 252 | 199 | 4.3E-78 | ||
| Gene3D | 56 | 106 | 51 | 1.1E-22 | ||
| SUPERFAMILY | 90 | 239 | 150 | 8.44E-18 | ||
| Gene3D | 108 | 257 | 150 | 3.2E-48 | – | |
| CDD | 126 | 204 | 79 | 1.95187E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0611800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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