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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617700 |
| Transcript ID | LotjaGi1g1v0617700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT5G14340.1 myb domain protein 40; Swiss-Prot: sp|P81394|MYB15_ANTMA Myb-related protein 315; TrEMBL-Plants: tr|I1MLP5|I1MLP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0617700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116449632..116451802) extracted from Lotus japonicus Gifu genome v1.2.
CAATTAAGTATTAACAAGAGAAGATTTTGGTACCAGCAATAATAAAATTTGTCAACGGGGCTTCTCACGTTTTTGGGTTC TTTCCCCTGTTGAAACTTTAATGGTTTAGTGGACTCATTCAATTGTCTCAACCAGGGTGTTGAGTAGTGACCACCATTTT ATAATGACAACCCTTCCATGCTTTTTCTACCTTTCAATTCAAAGTGCTTTCCGACCAATCATTCATCTCCCCCCTCTAAG GACACCCTGCTTTTATTTAAATCTCTCAATGAACTGGCAGCATCTTTGCTTCACTCTTAAGCTCCTTTTAAAGTGCCCTC CTTTTAATCTTTTTGCACTTGTTAATTAACTTTCAAGGCCTTGCTAGCGATCCAAAAATGGGAAGAAAGCCTTGTTGTGA TAAGATTGGTTTGAAGAGAGGTCCATGGACTATGGAGGAAGATCACAAGCTTGTGAATTTTATACTCAACAATGGCATCC ATTGCTGGAGAATGGTTCCCAAACTTGCAGGTAAATTCTAGAAGTTGTATTTACTATTTTCATTCTTTTTAGATTGTGAG TTTGCTTTGAAGTGGTATCTGAATTGTTGCATTTTGCATGGTGGTGAAGGTCTTTTAAGGTGTGGAAAGAGCTGCAGATT GAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGACTTTACAGAAATGGAAGAGGATCAAATTATACAACTAC ATTCATGTCTTGGTAACAGGTACAACTTGAGTTTCTGAATTGTCATTTGTCAAGAAATAATATCATAGGTGTTGAGAAAA TTGAGTGAGTTTGAAGTCCCACATTTGATAAAAGTGAAAGTGTTGAAGAGTATATAAGAGATAAGACCCACAAATTCAAT TCCTTAAAGTTTGGATAAATATATGATGTTTGTCTCTTTTTTCTTTCTTAGTCCAATGTGGTATGTGGACAGTATTTTTT TTATAAGATGCATGTTATTCCTTATTGGGTTTTCAAATTCGGGTTTGTACCCTTGATGGTTTTCTTATTGGATGCACAAT GTATATGTTTTCTAACAAGATGATGCACATTTTCAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATG AAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTAAAGCTTCTTGGCGTGGACCCTCTGACCCACAAGCCAATC GAGCTGAAGAAACAGACTGATGAGGACAAAAACAAGACCAACTTAATCATACAGCCAGATATTTCCAAAGGGTCTGAACA AAATGTGGAGACTAAATTATTATTGGATGGTTATGGCAGCAAAGAAATGACAAAAACAGATGAGAAAAGAGAAGAAAACA AGGTGACATGGGATGATACCTCAGAACTTATGAACAATTTTGAAATGCTATGCTCACAATTGGACTTGGGATCATGGATA AGCCATGAAACCAACACTAGTGCTAATTCTTTCAGCAGTTCCTCTGCTTCTTTGGATGAAACTAGCCACCTTTCTATGAG TGAATCCACTTGCCTTCAGGAAAATTCCTTGCAACAATGGGTTGATAACATAGATTCCAATCTCTCATGGGATGGCTTCA ATCCTTTTGACCAAGATTTTTTCTTCCTGGGAAATAGGGAATAAGCATAACCAGTAACCATCCCTTAAGAACTTCCCCAA CTTTTACAGTCTCTAAAGCAATTAAATGTTACAAAATATCAATGTAGAGAATAGAACACTTTTATCATTGCGTTTTATTG TCTTTGGCTGCTTTTTAAGCTGAATGTGATGATGATTCCATATTGAGTGCAAATTGTGTTTTTATAATAGCCTATTACTT CAAGAAATTTCTTGGATTCAGCTCCTCAACTACAAAACCCCTCAGTCCCACAACATGTGGGGCTGAAGGTTACAGAATCC ATAAGATAATCATGTTTAATTGTCTGCTATGTAACTATGGGTTTTATCAAAGTAGTCACATTTTTTTTCAAGTAATCATG TATAAACAAACTCCTTAAGGTAAAAACTTCTTCGTTTTTCTCTTACGTCCATAAGATAATCATGTTTAATTGTCTGTGTT GGTCTGAGTGAAAGAGGCTTCACTCTCTTAAGCATTTGGTCGTGAGTTGATCCCATGATTCATGTGTATGAAAAAACATG GTTGGGAAAAG
CDS sequence (LotjaGi1g1v0617700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAAAGCCTTGTTGTGATAAGATTGGTTTGAAGAGAGGTCCATGGACTATGGAGGAAGATCACAAGCTTGTGAA TTTTATACTCAACAATGGCATCCATTGCTGGAGAATGGTTCCCAAACTTGCAGGTCTTTTAAGGTGTGGAAAGAGCTGCA GATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGACTTTACAGAAATGGAAGAGGATCAAATTATACAA CTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCA TTGGAACACAAGAATCAAGAAGAGGCTAAAGCTTCTTGGCGTGGACCCTCTGACCCACAAGCCAATCGAGCTGAAGAAAC AGACTGATGAGGACAAAAACAAGACCAACTTAATCATACAGCCAGATATTTCCAAAGGGTCTGAACAAAATGTGGAGACT AAATTATTATTGGATGGTTATGGCAGCAAAGAAATGACAAAAACAGATGAGAAAAGAGAAGAAAACAAGGTGACATGGGA TGATACCTCAGAACTTATGAACAATTTTGAAATGCTATGCTCACAATTGGACTTGGGATCATGGATAAGCCATGAAACCA ACACTAGTGCTAATTCTTTCAGCAGTTCCTCTGCTTCTTTGGATGAAACTAGCCACCTTTCTATGAGTGAATCCACTTGC CTTCAGGAAAATTCCTTGCAACAATGGGTTGATAACATAGATTCCAATCTCTCATGGGATGGCTTCAATCCTTTTGACCA AGATTTTTTCTTCCTGGGAAATAGGGAATAA
Protein sequence (LotjaGi1g1v0617700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRKPCCDKIGLKRGPWTMEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGDFTEMEEDQIIQ LHSCLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLKLLGVDPLTHKPIELKKQTDEDKNKTNLIIQPDISKGSEQNVET KLLLDGYGSKEMTKTDEKREENKVTWDDTSELMNNFEMLCSQLDLGSWISHETNTSANSFSSSSASLDETSHLSMSESTC LQENSLQQWVDNIDSNLSWDGFNPFDQDFFFLGNRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 267 | 265 | 8.5E-92 | – | |
| PANTHER | 3 | 267 | 265 | 8.5E-92 | ||
| ProSiteProfiles | 9 | 61 | 53 | 13.193 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.8E-28 | ||
| Gene3D | 11 | 67 | 57 | 4.7E-16 | – | |
| SMART | 13 | 63 | 51 | 3.8E-7 | ||
| Pfam | 14 | 61 | 48 | 1.2E-11 | ||
| CDD | 16 | 61 | 46 | 3.58397E-5 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.188 | ||
| SMART | 66 | 114 | 49 | 3.0E-15 | ||
| Pfam | 67 | 110 | 44 | 2.6E-14 | ||
| Gene3D | 68 | 147 | 80 | 2.9E-19 | – | |
| CDD | 70 | 110 | 41 | 3.66532E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0617700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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