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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0618100 |
| Transcript ID | LotjaGi1g1v0618100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|V7B4N7|V7B4N7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0618100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116490572..116492112) extracted from Lotus japonicus Gifu genome v1.2.
GCCAACCAAAATAACAAACATTATTACATTACCATGATTTTCTATTGCTTTCTTTCCTTTCTTTTATTTTTGGCCATCCC AAGCAAGATGCAGAAAATTCAGGCTTTCAAATTGACATTGTTCAGAGTTCCAAGACCAAAAAAAGAGATTGCAAGCATGG AGCAGTTGCCAAGTGAATTGGTATCAAACATCCTCTCACGGTTGCCAGCTAAAGATTTGGTGAAATGCAAATCTGTTTGC AAATCCTGGTTCAATCTCATATCTGATCCTTATTTTGCTACCAATTACTATGCTTTCTACAACAATCTCAAGCACCAACA AGAGCCTCTGTTTGTCATAAGAAGACCCTTTCTTTCAAGCCTCAAAACTTGCATTTCATTGCTTTCTTCTAGTGTCAATC ATCCCCATGTTTCCTCTGAACTTCTAAACCCTCCCTCTGAATACAATTCTGACCGCCAATACTGGACAGAAATCATGGGC CCTTGCAATGGCATATACTATTTAAAAGGCAGCCCAAATGTCCTGATGAACCCTTCTTTGAGACAGCTCAAGGCTTTGCC TGCATCGAACTTGAGTACTTCTTCTCCACAGAAAACTTATTCTCTCACAAATTATGCTGGGTTTGGGTTTGACCCCAAAA CCAATGACTACAAAGTTGTTGTGATCAAGGACCTCTGGTTTGAGAAAGCAGAACGACAAAATGGGCATTGGACAGCAGAG TTATACAGCCTCAATTCCAACTCTTGGAGAAACCTTGATGCAGCTCTCCCACTTCCCTTTGAAATTTGGGGTTCTTCTCA AGTGTGTACTTATGTGAACAATTGTTGTCACTGGTGGGGTTTTGTTGATGAGTGTGGCGAAAAACAGGATGTTGTTCTTG CATTTGACATGGTCACCGAAGTCTTCAGAAAAATTAAAGTACCTAGAATTCGTGATTCTTCAGGGGAAGCTTCCGCAACT CTGACACCCTTTAACACAACTAGCACACTTGGTGTCATTGTCCACCCTGTAAGAGGAGATGTGAAAGGCTTTGACGTGTG GGTAATGAAAGATCATTGTGACGAAGGTTCTTGGATGAAACAATACTCTGTTGGACATAGAGAAGTGATTTACAAGTTGG TGGGGTTTTATGGAAGCCACCATTTCGGTTCAATTGAAGACAATGAAGGATTAGTACACAACTCGAAACAAATAAAGGAT CTTCAGGTTTATGGAATGTGTGAATCATTAAGAGCTACAAGATACATGGAAAGCCTTGTTTCACTGCACAGAGGAAATGA GTTTAGTGGGCAGTTTGTTTCGTGTTCCTCGGTTCCAGACCTTCTACCAAATCAGCCAAGGAATTATTTAGTTAGTTTGT CACAGAAGATGAAGACATTCCTCAAAATGTAATGATGCATTGGTTATATGTTTTGTTTCCACATGTATCTTCTAAGTGGA AAATGTCTATATATCTTGGTTGCTACCTTTTCCAACAATTTTTCTCCATAAGAATAGAGACTTTGTTCAACGAAACTAGG CTAGCTTGTACCATTTCAACC
CDS sequence (LotjaGi1g1v0618100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTCTATTGCTTTCTTTCCTTTCTTTTATTTTTGGCCATCCCAAGCAAGATGCAGAAAATTCAGGCTTTCAAATT GACATTGTTCAGAGTTCCAAGACCAAAAAAAGAGATTGCAAGCATGGAGCAGTTGCCAAGTGAATTGGTATCAAACATCC TCTCACGGTTGCCAGCTAAAGATTTGGTGAAATGCAAATCTGTTTGCAAATCCTGGTTCAATCTCATATCTGATCCTTAT TTTGCTACCAATTACTATGCTTTCTACAACAATCTCAAGCACCAACAAGAGCCTCTGTTTGTCATAAGAAGACCCTTTCT TTCAAGCCTCAAAACTTGCATTTCATTGCTTTCTTCTAGTGTCAATCATCCCCATGTTTCCTCTGAACTTCTAAACCCTC CCTCTGAATACAATTCTGACCGCCAATACTGGACAGAAATCATGGGCCCTTGCAATGGCATATACTATTTAAAAGGCAGC CCAAATGTCCTGATGAACCCTTCTTTGAGACAGCTCAAGGCTTTGCCTGCATCGAACTTGAGTACTTCTTCTCCACAGAA AACTTATTCTCTCACAAATTATGCTGGGTTTGGGTTTGACCCCAAAACCAATGACTACAAAGTTGTTGTGATCAAGGACC TCTGGTTTGAGAAAGCAGAACGACAAAATGGGCATTGGACAGCAGAGTTATACAGCCTCAATTCCAACTCTTGGAGAAAC CTTGATGCAGCTCTCCCACTTCCCTTTGAAATTTGGGGTTCTTCTCAAGTGTGTACTTATGTGAACAATTGTTGTCACTG GTGGGGTTTTGTTGATGAGTGTGGCGAAAAACAGGATGTTGTTCTTGCATTTGACATGGTCACCGAAGTCTTCAGAAAAA TTAAAGTACCTAGAATTCGTGATTCTTCAGGGGAAGCTTCCGCAACTCTGACACCCTTTAACACAACTAGCACACTTGGT GTCATTGTCCACCCTGTAAGAGGAGATGTGAAAGGCTTTGACGTGTGGGTAATGAAAGATCATTGTGACGAAGGTTCTTG GATGAAACAATACTCTGTTGGACATAGAGAAGTGATTTACAAGTTGGTGGGGTTTTATGGAAGCCACCATTTCGGTTCAA TTGAAGACAATGAAGGATTAGTACACAACTCGAAACAAATAAAGGATCTTCAGGTTTATGGAATGTGTGAATCATTAAGA GCTACAAGATACATGGAAAGCCTTGTTTCACTGCACAGAGGAAATGAGTTTAGTGGGCAGTTTGTTTCGTGTTCCTCGGT TCCAGACCTTCTACCAAATCAGCCAAGGAATTATTTAGTTAGTTTGTCACAGAAGATGAAGACATTCCTCAAAATGTAA
Protein sequence (LotjaGi1g1v0618100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFYCFLSFLLFLAIPSKMQKIQAFKLTLFRVPRPKKEIASMEQLPSELVSNILSRLPAKDLVKCKSVCKSWFNLISDPY FATNYYAFYNNLKHQQEPLFVIRRPFLSSLKTCISLLSSSVNHPHVSSELLNPPSEYNSDRQYWTEIMGPCNGIYYLKGS PNVLMNPSLRQLKALPASNLSTSSPQKTYSLTNYAGFGFDPKTNDYKVVVIKDLWFEKAERQNGHWTAELYSLNSNSWRN LDAALPLPFEIWGSSQVCTYVNNCCHWWGFVDECGEKQDVVLAFDMVTEVFRKIKVPRIRDSSGEASATLTPFNTTSTLG VIVHPVRGDVKGFDVWVMKDHCDEGSWMKQYSVGHREVIYKLVGFYGSHHFGSIEDNEGLVHNSKQIKDLQVYGMCESLR ATRYMESLVSLHRGNEFSGQFVSCSSVPDLLPNQPRNYLVSLSQKMKTFLKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 452 | 428 | - | – | |
| Gene3D | 28 | 81 | 54 | 3.6E-12 | – | |
| SUPERFAMILY | 37 | 114 | 78 | 2.35E-16 | ||
| ProSiteProfiles | 39 | 92 | 54 | 13.207 | ||
| Pfam | 42 | 81 | 40 | 9.3E-11 | ||
| PANTHER | 44 | 382 | 339 | 1.1E-39 | – | |
| PANTHER | 44 | 382 | 339 | 1.1E-39 | – | |
| SMART | 45 | 85 | 41 | 3.4E-10 | ||
| TIGRFAM | 148 | 365 | 218 | 1.7E-23 | ||
| Pfam | 277 | 352 | 76 | 2.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0618100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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