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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0618300 |
| Transcript ID | LotjaGi1g1v0618300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7MX79|K7MX79_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116517245..116525616) extracted from Lotus japonicus Gifu genome v1.2.
ACTGAAACAACAAAGGCCAACCTGAACCAAAGTAACCATTCGATACACTACCCAAAAACTAATTAGGCCAACCATTAATA CACCATGATTTTCTATTGCTTTCTTTCCTTTATTTTATTTTTGGCCATCCCAAGCAAGATGCAGAAAATTCAGGCCTTCA AATTGACATTGTTCAAAGTTCAAAGACCAAGAAGAGAGATCACAAGCATGGAGCAATTGCCACAAGAATTGGTATCAAAT ATCCTCTCACGGTTGCCAGCTAAAGAGTTGGTGAAATGCAAGTCCGTTTGCAAATCATGGTTCAATCTCATATCTGATCC TTATTTTGCTACCAATTACTATGCTTTCTACAACAATCTCCAGCAACAAAAGGAGCCTCTGTTTGTCATTCGAAGACCCT TTCTTTCAAGCCTCAAAACTTGCATTTCATTGCTTTCTTCTAATGTCAATGATCCCAAAAACCATGTTTCCTCTGAACTT CTAAACCCTCCCACTCAATACAATTCTAACCACACATACTGGACTGAAATCATGGGCCCTTGCAATGGCATATACTTTCT AAAAGGCGAGCCAAATGTCCTCATGAACCCTTCTTTGAGACAGTTCAAGGCTTTGCCTGAATCCAATTTGTCCAGTGATG ACTATTATTCTCTCAAGAATTATGCTGGGTTTGGGTTTGACCCCAAAACCAATGATTACAAAGTCGTTGTGATCAAGGAC CTGTGGTTTGAGAATGCAGAACGAAAAACTGGGAATTGGACAGCAGAATTATACATCCTCAATTCCAACTCTTGGAGAAA CCTTGATGCAACTCTCCCACTTCCTTTCCAAATGTGGAGCTCTTCTCAAGTTACTTATGTGAACAATTGTTGTCACTGGT GGGGTTTCGTTGAAGAGTGTGGTGTAAAAAAGGATGTTATTCTCACATTTGACATGGTCACCGAAGTCTTCAGAAAAATC AGGGTACCCAGGATTCGTGATTCTTCAGAAGAAGTTGTCACAACGCTGGCACCCTTTGACAAATCTGGTACAATTGGTGT CATTGTCCACCCTGTAGTTAGTGGAGATGTGAAATGCTTTGACGTATGGGTGATGAAAGATCATTCGGATGAAGGTTCTT GGATGAAGCAATACTCGGTTCGACACACAGAAGTGATTTATAAGGTTTTGGGGTTTTATGGAAGCCATTGTTCTGTTTCG AACGACGACAATGAAGGATTAAAGCCTAGCTCACAACAAATAAAGGATCTTCAGGTTTATGGAAAGTGTGAGGGGTTAAG AGCTATAAAATACATGGAAAGCCTTGTTTCACTACACAGGGGAAATGAGTTTAGTGGCCAGCTTGTTTCGTGTACCCCAG TTCCAGACCACCTACCAAATCAGCAAAGGAATTTCATTGTTAGTTTGTCCCAGATGATGAAGACATTCCTGAAAATATGA TGATACAATGGTTATATGATTTTTTTTTTGCTTAAATATGTTTTTAATCCTTGAGAAATATAAATTGATTCATTGCAATA ACTCCTTGAAAAAACTTTATTTGAAATTGATCTAATTGATGTCTCCTTACATACGTGGCATGAATTTTACCTTCTCACCT CTCTACGTATTATTTCATTAATCCTTCATGTTATTTCTTATCCTTCATATAATTTCTTTTATTATCTGTCACCTTCATTC CCCCCCCCCGTGGAGGGTGGTGATGATGATGGCGGTGTTGGGTGGTTGTGGTGGTGGTGGTAGAGATGATGGTTGTGGCG GCATTGGAGGAGGATTGTCGTTGTGGTAGTAGTGATGGTAGCGACAGTGGCAGTGGTGGGCGGTGGCAGAAGAGTGATAG TGGTCAATCCTGAAAATGTGATAATACAACAGTTATATATTTTGACTTAAATATATTTGTAGTCCTGAAACTTAAAGAGA AATATAAATTTATTCATTGCAATAGGTCCCTAAAATAAACTTATTTTAAATAGATCAAATTGATGTCTCCTGAATTACGT GGCATAAATTTTAGCGGTCACCTCGTTAAATTCATTTCACTAATCCTACATGTTATTTTTTATCCTACATGTAATTTACT TTATTATTTGTCACCCTCTGCTTCTCCCTTCTTCCTCTCCTTCGTCCTCCTCCCACCCACCACCATACCCACTACCACAC CACCCCCACCCTTCATTCTCCTCTTCCTCTTGATCGTCCTCCTCCTACACCTCCCTGCACCCACTCTTCTTCCCAAACAC CATAGCCACCAACCCACATATTACTTTCCCTTTCAATCATCTCCCCTTCCTCTTCCCCAAATCGGCATCAGTAACACCAT AGCCACCAAATATTAACCCAATTCAAAATCATAACCCCATTTTCCCAATTTCTAAAATGGGAATAGGTGTTGAGATTTTG TCTCGGTAGTTATTTGAATTTCAAATTTAAGCTGTTAGTTTTAGCTTTTTAATTAATTTTCAATATGTCTTATTAAGAAA GGGTATTTGAAGTTTGTTAGGATTTTAGTAGATAAGATAATTTTTGTTTACTTAATGTGACTCGGTATCTAAAATATTTT AGTATGTTCATCAATAAAATATTTATCCTTTGCAACAATTAATTTTATTTTCTTTCATATTCTTCTCTCCTGCTTCTTTC TTCTTCTCGTTAAACACAAAAAACCAGCAAGTGGTATCTAGAGTCATCTTCTTACGGACCTGTGAACATGGATGTTGAAT CAAATTTCTCACAAGTTGCACCTCCAATCTTTGTTGGAGAAAACTAAGATCTATAGGCTGTCGAAATGGATGTTTACGTG ATGAAGTCTATGGATTTTTGGGAAATTATAGAAGAGGATTATGAAGTCATTCCGCTGCTGGTCAATCCTACCGTGGCCCA CATCTGGAATCATAAGGGAAAAAACCCGAAAAGAAAATGTGAAATCATGTCTTCTTGCTGGTCTTTCATCAACCATTTTC ATAAGGATCATGAGTCTCAAATCATATACTGCAGAACTGAAATCATCAACCCAATAGCTAGTAGGAACATGCAAATGGTA CACCATTGCAAGACCGATCTCAAAAACATGTTTATGTTTTCGTTCAACCCGACCATTCCGTGCCTGAGTATGCGGGCATG AAATCCAATGAAGCGCATCAAAGGAAGCAAATAAAGCCTGCACTTTGTTACCCCGTGAGTTCTGTGCCATTGTCACTTTG AAAAATTCTGATAGACCGAGAAAATTGATTTTTCACAAAGGTTTTGAACTGAAGAAGCATATCATAAAAATCTGATTTAC TCCGTAATGGATAAAACTGAGTAAAACAGGAGAAATCATCCACGAAAAATAACAAAGTAAGAATATCCAGCAATAGTAGC AACGAGAAACGGTCGCTATAAATCACAATGAACAAGATTAAGAACGGCGAAAGCCTGTTTATTATTGTCATGAAAAACCA AACGTTTATTCTTAGTCATCTAACAAGTAGTACAACAGATTGAGTTCTTGCTCACATCGGTCATTGCCAGAACGACTCCT GACTTTCGGTTCTGAGGAACAAAAGAGTCATCCATAAAAACAGCTTTAGAACAATTATCACGAGTCCGGTCAGAATTGAG TCTGACCATAATTGATTGTAAACGTGAATTAAAGTGACATAATTTATGTTTGAATACAGTTACAAAAAACAAAAACGTGA TTCTTGTAAGAGAATTTTGTTTGGATATCTTTGATTAGAATTGTTTTAAGTTGTGTATTGACCAAAATAGACATCACATC AATTTTAAATTTTAATGATGGCAACGAGGTAGAAAAAATCCGTACCCGCGTCTAAAAACCCGTCACAGATATAGCGACTT GCGGGTTCGGGTACTCGCGGGTTAAAAAAACTGATATTTTAGATACTGTCTACAAACGGGGCGGGCGGGTATCTGCGTCC CCGTACCCGCTGTTGTTAAAGGAAAAGAGCAGGTGTTCGCTTAGGTGATTATATTCAGTGTTTTAAGACTTAGCTCGGAC CGAGACTCGGTGACTTGATCGGTCCGAGCCTCACTTCAGTTCGGTTGTGCATGTCACTCGACTAGAACCGTTTCGAACCG GCCAGTTTAATGATCAAACCGGTGACTCAGCTGCTTTTTTTATTGAACCGGGGAGTCACTTTTTTTTTTGTCAATGTGAG TCCCCCTTTTCATGTTTTTTAATTTTTTTTTAAATTTGTTGACGATGGGTCATACGTGGAAGCCCGTTTACCTTATTATT TAACATATTGGGTCATTTAAATTGTTTTTTTTTTTAATCTTGTATGTAGTAAGAAAAAAACGTGATATTATGCTTAAAAA TGCTCCTAGGAGGGTTTGAACTCAAGCCATAGAGAAAATATGAAGGAAACATAATCACTGCACCATCATTATGTTATTGA TTAGAGACGCGTTTTATTAATTATATATTAATATATATTGCATTGGATATTTTTTTATATTTTTTTAATATACACCGAAT CAAGCAATCGAACCAGTAACCCACTGATCCGACCCGTCCGAGTCAATGATCAAGCCGAGTTTTAAACACTGATTATATTC ATTAGACCAACGCTGCAACTCTAATCCTTTCTATTTGTAAAATTCAATTATCGTGATTTTTATATTCATAACCCAAGAAC AACAAACCTTCTGATCAATTCAAATGTTTTCAATTTCATCACGGGTTGCTCTTTATCGTGTTCCACTTTGGTGATTTTCG ATGTAGTAGTTTTAACCTTCAGATCTGATTCTTGGGTTTTTTTTCTAAATAATGTAAAAAAAAATTAGCAAAAAGGTAGA AAAAATTGTATTTAGCAAATTGAGACAGTTCTTGATTAGAAATGTCAATGGGTATGGGTGGGCATGGATATTATATATTC ATTATCCGCTCTACATGTAAAAAATTATACTTGTACCCGCTCTATATTCACATAGATATCCATTAAATGGATTTTAACTG GATTTTCAAATATTAGTGGATATTCATGGGCACCCGACACCCATGAACATAAATAAATTCACATATATTTGTTCAAAAGA AAATTATATTAAAAGTAAAATTTAATATTGGACTTTACGATCAATCAATGTGTGAAGGATAATACTTCTTTTCTACCGTT TTTTTGGTCTAAGGGCTTTTTTTCACCATCACCATTGTATAAGTTTACTTAAAAGAGAACTATAATTCAAACACAAATTC ACTAGATATTAGACTTAATATAGATCTATGTATATATATAAAGATATTTTAGTATTTTATATATCGGGTGAGTATCCGTG GGTATGAATACATCTGTATCCGTACCCGCCCCATTAATAAATGGATAGTGGAAATATTCATTAAATAAATCTGTGAATAC CCGTGACGTGGGTAGTTTTACCCATAGTGGGTTTTTATCCGCGTGTATCCACGAGTGTGGATAATTTTGACATTCTATTC TTGACACATAGGATCTGATGTGTATGGGGTTCCTTGAATTTACAATATTTTTTACGAATTGCTGTCAAATGACAACTTCC TGATCAGAGGAGACCGTAATGGTTAGTGGAATTCCGATAATTTCCTCGAAATGGCAAAATTTAAATATTTCTTTGTGCTT GAGTTAAAACAAAATAAATTGTGGCCAAGTAGTATTGACACTTACAATCAACATGTGGAGGTACCGTGTTCTACATTAAT AAATGGATAGTGGAAATATCCATTAAATAAATCTGTGAATATCCGTGGGCGCGGATGATTTTACCCATAGTGAGTTTTTA TCCGCGTGTATCCACGAGTGTGGATAATTTTGACATCCTATTTTTGACACATAGGATCTGATGTGTATGGGGTTCCTTAA ATTTACAATATTTTTTGTGAATTGCTGTCACATGACAACTTCCTGATCAGGAGACTGTAATGGTTAGTGGAATTCCGATA ATTTCCTTGAAATGGAAAAATTTAAATATTTCTTTGTGCTTGAGTTAAAACAAAATAAATTGTCCATTCAAAAAAAAAAC AAAAAAAATTTGTGGCCAAGTAGTATTGACACTTACTATCAACCTGTGGAGGTACCGTGTTCAATATTTCTTTCTCCGTG AGTTAAAACAAAATAAAATTTAATTAACATATTATGATCAAGAGAAAAAGGATGATGCACCGACAGTGTAAAGTTTTTTA CACCGTCAACCAATCAGATTTTAAGGATGTGCCACGTCAATTAATGAAATTAAATAAAATGAGAGATTTTCTCACATTCT TAAAATCTAATTGGTTGCTGTCGGTGCATAGAAATTAAACTCTATGATCAATATATACACATGTTATTGACCTTTCCAAA ATGTCCTACCAAACGCTACCTATGTAACTAGTTAATGTTCTTGAATTGTTTCAAAAGAAAAAAGTTCTTGAATTAGTCCA CGACCTTTAAAAAAAAAAAAATCCATGGCCTTATCATCAAACACCTCTAGAACCATCTTCCACCAATCATCAGTATGCCT AATCATCCATCACGCAATGATTGACACCCCCTATAGATTATATGGATAAAATAACCATTACATATACAACCCCATTCGAT AGAGTACCCCAACTAATTAGACCAACCAATACACCATGATTTTCTATTGCTTTCTTTCCTTTCTTTTATTTTTGATCATC CCAAGCAAGATTCAGAAAATTCAGGCTTTCAAATTGACATTGTTCAGAGTTCAAAGACCAAGAAGAGAGATCACAAGCAT AGAGCAGTTGCCACAAGAATTGGTATCAAATATACTCTCACGGTTGCAAGCTAAAGAGTTGGTGAAATGCAAGTCCGTTT GCAAATCCTGGTTCAATCTCATATATGATCCCTATTTTGCTGCCAGTTACTATGCTTTCTACAACAATCTCAAGCAACAA GAGGAGCCTCTCTTTGTCATTCGAAGACCCTTTCATTCAAGCCTCAAAACTTGCATTTCATTGCTTTCTTGTAATGTCAA TCATCCTAAAAAGCATGTTTCCTCTGAACTTCTAAACCCTCCCTCTAAATACAATTGTAACCACACATACTGGACTGAAA TCATGGGCCCTTGCAATGGCATATACTTTCTAAAAGGCGAACCAAATGTCCTCATGAACCCTTCTTTGAGACAGTTTAAG GCTTTGCCTGAATCCCATTTGTCCAATTCAGATGACACTTATTCTTTCAAGAATTATGCTGAGTTTGGGTTTGACCCGAA AACCAATGACTACAAAGTCATTGTGATCATGGACCTCTGGTTTGCGAATGCAGAACGACAAATTGGGAATTGGACAGCAG AGTTATACAGCCTCAATTCCAACTCTTGGAGAAATATTGATCTTGTTGTCCCACTTCCCTTCCAAATATATGACTATTCT CAGGTTTACACTCATGTGAACAATTGTTGTTACTGGTTCGGCTTTGTTGAAGAGTATGGTGTAAAAAAGGATGTTGTTCT TGCATTTGACATGATCACCGAAGTCTTCAGAAAAATCAAAGTACCAAAAATTCGTGATTCTTCAGATGAAGCTTTAACAA CTCTGGCATCCTTTCATGAATCTGGTACCATTGGTGTCATTGTCCTCCCTGCCGTAAGTGGAGATGTGAAATGTTTTGAC GTGTGGATGATGAAAGATCATTCAGATGAAGGTTCTTGGATGAAGCGATACTTGGTTCGACACAAGGAAGTTCTTTGTAA GGTATTGGGGTTTTTTGGAAGCCATTGTTCTGTTTGGAATGACGACAGTGAAGGATTAAAGCCTAGCTCGCAACAAATAA AGGATCTTCAGATTTATGGAAAGTGTGAGGGGTTAAGAGCTATGAAATACATGGAAAGCCTTGTTTCACTCCACAGGGGA AATGAGTTTAGTGGCCAGCTTGGTTCATGTACCTCGGTTCCAGACCCACTACCAAATCAACGAAGGAATTTCATTGTTTT CTTGTCATAGAAGATGAAGACAATCCTGAAAATATAATGATACAATGGTTATGTTGTAATAATTACTCAAGGAGTAATAA TTACATAGTGTTCCAAAATGACAAATGTGTTGCATTGAATGAATTTGAATGAAGTCCCACATAGAAAGTGGAGTAACTAT TCAAAGCATTTTTATATCATTAAATGTCAATCATTCAACAAAGAGACAAAGAGAGGATATAGTGTCACATGTGCATGGTT TGGTGGTCCCAAGCTTTTATGTCACTTGTTCCATTCACACCACCCCTCACCACCGGCGTGGGCAAAGAGGCGCTAGTGGC GGCTTGTAGACGGCACGACACTTGAGGCGGCTAGTGGCGGCTTGTAGACGGCACGACACTTGAGGCGACGGCGACGCGGT TTCCGTAACGTCCGTTTGTTTTTGGTCGTTTTGATTTTGAACTTTGCGACTG
CDS sequence (LotjaGi1g1v0618300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTCTATTGCTTTCTTTCCTTTCTTTTATTTTTGATCATCCCAAGCAAGATTCAGAAAATTCAGGCTTTCAAATT GACATTGTTCAGAGTTCAAAGACCAAGAAGAGAGATCACAAGCATAGAGCAGTTGCCACAAGAATTGGTATCAAATATAC TCTCACGGTTGCAAGCTAAAGAGTTGGTGAAATGCAAGTCCGTTTGCAAATCCTGGTTCAATCTCATATATGATCCCTAT TTTGCTGCCAGTTACTATGCTTTCTACAACAATCTCAAGCAACAAGAGGAGCCTCTCTTTGTCATTCGAAGACCCTTTCA TTCAAGCCTCAAAACTTGCATTTCATTGCTTTCTTGTAATGTCAATCATCCTAAAAAGCATGTTTCCTCTGAACTTCTAA ACCCTCCCTCTAAATACAATTGTAACCACACATACTGGACTGAAATCATGGGCCCTTGCAATGGCATATACTTTCTAAAA GGCGAACCAAATGTCCTCATGAACCCTTCTTTGAGACAGTTTAAGGCTTTGCCTGAATCCCATTTGTCCAATTCAGATGA CACTTATTCTTTCAAGAATTATGCTGAGTTTGGGTTTGACCCGAAAACCAATGACTACAAAGTCATTGTGATCATGGACC TCTGGTTTGCGAATGCAGAACGACAAATTGGGAATTGGACAGCAGAGTTATACAGCCTCAATTCCAACTCTTGGAGAAAT ATTGATCTTGTTGTCCCACTTCCCTTCCAAATATATGACTATTCTCAGGTTTACACTCATGTGAACAATTGTTGTTACTG GTTCGGCTTTGTTGAAGAGTATGGTGTAAAAAAGGATGTTGTTCTTGCATTTGACATGATCACCGAAGTCTTCAGAAAAA TCAAAGTACCAAAAATTCGTGATTCTTCAGATGAAGCTTTAACAACTCTGGCATCCTTTCATGAATCTGGTACCATTGGT GTCATTGTCCTCCCTGCCGTAAGTGGAGATGTGAAATGTTTTGACGTGTGGATGATGAAAGATCATTCAGATGAAGGTTC TTGGATGAAGCGATACTTGGTTCGACACAAGGAAGTTCTTTGTAAGGTATTGGGGTTTTTTGGAAGCCATTGTTCTGTTT GGAATGACGACAGTGAAGGATTAAAGCCTAGCTCGCAACAAATAAAGGATCTTCAGATTTATGGAAAGTGTGAGGGGTTA AGAGCTATGAAATACATGGAAAGCCTTGTTTCACTCCACAGGGGAAATGAGTTTAGTGGCCAGCTTGGTTCATGTACCTC GGTTCCAGACCCACTACCAAATCAACGAAGGAATTTCATTGTTTTCTTGTCATAG
Protein sequence (LotjaGi1g1v0618300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFYCFLSFLLFLIIPSKIQKIQAFKLTLFRVQRPRREITSIEQLPQELVSNILSRLQAKELVKCKSVCKSWFNLIYDPY FAASYYAFYNNLKQQEEPLFVIRRPFHSSLKTCISLLSCNVNHPKKHVSSELLNPPSKYNCNHTYWTEIMGPCNGIYFLK GEPNVLMNPSLRQFKALPESHLSNSDDTYSFKNYAEFGFDPKTNDYKVIVIMDLWFANAERQIGNWTAELYSLNSNSWRN IDLVVPLPFQIYDYSQVYTHVNNCCYWFGFVEEYGVKKDVVLAFDMITEVFRKIKVPKIRDSSDEALTTLASFHESGTIG VIVLPAVSGDVKCFDVWMMKDHSDEGSWMKRYLVRHKEVLCKVLGFFGSHCSVWNDDSEGLKPSSQQIKDLQIYGKCEGL RAMKYMESLVSLHRGNEFSGQLGSCTSVPDPLPNQRRNFIVFLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 444 | 420 | - | – | |
| Gene3D | 28 | 81 | 54 | 5.1E-11 | – | |
| SUPERFAMILY | 35 | 114 | 80 | 1.57E-15 | ||
| ProSiteProfiles | 39 | 92 | 54 | 12.597 | ||
| Pfam | 41 | 79 | 39 | 4.6E-8 | ||
| PANTHER | 44 | 351 | 308 | 3.7E-37 | – | |
| PANTHER | 44 | 351 | 308 | 3.7E-37 | – | |
| SMART | 45 | 85 | 41 | 2.4E-7 | ||
| TIGRFAM | 150 | 360 | 211 | 2.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0618300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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