Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0621700 |
| Transcript ID | LotjaGi1g1v0621700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|I1N257|I1N257_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0621700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116907256..116909144) extracted from Lotus japonicus Gifu genome v1.2.
CCTAGTGGGCACCCTTGATATTCAACTTGCTCTCAATATGGCCGTATAAATAGTAAAAAATTGGTGTGCAGAAAATAAAT CAACTAATATTTGAAAAAGCCCAACAGATTTGAAGTCCAACAAATTCAACACATAGAAGGAACCTTAAAAAACCCTAGTC AGTGTCTATCAAACATTGAGTGTGGAGCAGACAGATTACAGTAGCAATGGTTGATAGGATTAGCAATTTACCAGATGAAC TTCTGTTTCACATTCTCTCGTTCCTTCCAACTGAAGATGTTTTTGTGACAAGTCTTGTGTCCAAGAGATGGAGACCACTC CGGTTTTCAGTCACCGATCTCCACTTTGTCGAGCTTAGAAATAGAAATACTCACCTTGAACCACGTGTGCCACGATACTC TGCCTTTATCAAATTCGTAGACGCATTCATTCTCAGACGAGGTATTCACCAACCCATCAAAACTCTTCGCCTCGAGTGTT ACTCGTGTCCAGTTTTCAAAGTTGAGAAATGGTTGAAAGCCGCAGCAGACTGCAAAGTTGAGAATCTCCAAATCTGTGGG CCGGTTTTGCCATGCACCATTTTCAGCATCAAAACCCTTGTTGTTCTCAAGTTGAGATGCGTGGATTTTAAGGGTTTTTC TGATGTTGAACTTCCCTTACTCAAAACTCTGCATTTGGACTATGTTACTTTCTCAAAGTGTCAACATTTTATAGAGCTTC TTAATGGGTGTCCATTGCTTGAAAATTTGGAAGCAAAATGCATATCTGCTGCTTTCGTTGATGACCCTAAGTTTACAACT TTATCAAAGTTGGTCAGAGCAGATGTTTTTAACTTAAGAAGACCTCTTGATATTCCTATGAGAACTTTTTGCAATGTAGA GTTTCTTCGCATAGACCAGGTTTGTAATCATGTTTTTGTAATCAATTTAGTTTGTTAATGTTATCAATATTTCTGATAAG TTTCTCTTTGCAGTTCTGTGATGTAGACATTCCTATATTTCCCAATTTAATTCAGCTGGAACTCATGTTTGGACGCCACG ATCTTAAATGGGAATCGGTGCTTGATATGCTCAATCATTGCCCTCAACTTCAAACTTTTGACCTTGAAAACCCATCTTAT ACTGCTGATAAGGTTTGGCCAAATACACATGTTGTTCCTAAATGCTTTTCTTCACAACTCAGGACGTGCATTCTTAGAAA TTTTAAAGGCAAGGAAAGTGGGATGAGATTTGCCAAGTTTGTTATGCAAAATTCAGCATTGTTAGATACCATGACAATTT TCAGTTACCGTCACCTATCTCTTGAGGAAATTCTGGAAATGAGAAAAGAATTGGACTCATGCCCAAGGAGCTCTGCATCC TGTGAACTTTTATTTAAGTAATTTTTATGCTTGTTAGTATTTGAAAATTATTTCCAGATGACTGCAATTGTATTCAGTAC TACATATATTATATCTGCTGGTTTTGGTGCTTTTTTGAAGGACATATGCTGTGTTTTGCTGTTGGTACATCAGTATTTTT TAAATGTAACAGAAACTGAAATAGGAATAGATTTTTAAACTAGCTATTTGGATGTGTATCCTTGTGAGTCTTAGCCCTTT TAATTGATGTAGCAGAAGAGAACTTGAGGAGATTCTATTTAATTCCACCATACTCTCTAATTCATTAACCTCTAGCTGCA CAGTTGCTCCATCTCGCCTTTCATCTGCTTCAACCCTTCACAAGGTTCTTTCCCCATCCAATTGTGATGGGGAGAATAGC TCTGGATGATGGAACTCTCTAGCTTACTAAGAAAACAAACTTCTAGGCCATAAGAATTTCACTCTACATCATTGTTTTTC TTCTTCATAAAGAACACTAAAATTATGCTTAAGATTTAAGAAAATAAAA
CDS sequence (LotjaGi1g1v0621700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATAGGATTAGCAATTTACCAGATGAACTTCTGTTTCACATTCTCTCGTTCCTTCCAACTGAAGATGTTTTTGT GACAAGTCTTGTGTCCAAGAGATGGAGACCACTCCGGTTTTCAGTCACCGATCTCCACTTTGTCGAGCTTAGAAATAGAA ATACTCACCTTGAACCACGTGTGCCACGATACTCTGCCTTTATCAAATTCGTAGACGCATTCATTCTCAGACGAGGTATT CACCAACCCATCAAAACTCTTCGCCTCGAGTGTTACTCGTGTCCAGTTTTCAAAGTTGAGAAATGGTTGAAAGCCGCAGC AGACTGCAAAGTTGAGAATCTCCAAATCTGTGGGCCGGTTTTGCCATGCACCATTTTCAGCATCAAAACCCTTGTTGTTC TCAAGTTGAGATGCGTGGATTTTAAGGGTTTTTCTGATGTTGAACTTCCCTTACTCAAAACTCTGCATTTGGACTATGTT ACTTTCTCAAAGTGTCAACATTTTATAGAGCTTCTTAATGGGTGTCCATTGCTTGAAAATTTGGAAGCAAAATGCATATC TGCTGCTTTCGTTGATGACCCTAAGTTTACAACTTTATCAAAGTTGGTCAGAGCAGATGTTTTTAACTTAAGAAGACCTC TTGATATTCCTATGAGAACTTTTTGCAATGTAGAGTTTCTTCGCATAGACCAGTTCTGTGATGTAGACATTCCTATATTT CCCAATTTAATTCAGCTGGAACTCATGTTTGGACGCCACGATCTTAAATGGGAATCGGTGCTTGATATGCTCAATCATTG CCCTCAACTTCAAACTTTTGACCTTGAAAACCCATCTTATACTGCTGATAAGGTTTGGCCAAATACACATGTTGTTCCTA AATGCTTTTCTTCACAACTCAGGACGTGCATTCTTAGAAATTTTAAAGGCAAGGAAAGTGGGATGAGATTTGCCAAGTTT GTTATGCAAAATTCAGCATTGTTAGATACCATGACAATTTTCAGTTACCGTCACCTATCTCTTGAGGAAATTCTGGAAAT GAGAAAAGAATTGGACTCATGCCCAAGGAGCTCTGCATCCTGTGAACTTTTATTTAAGTAA
Protein sequence (LotjaGi1g1v0621700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISNLPDELLFHILSFLPTEDVFVTSLVSKRWRPLRFSVTDLHFVELRNRNTHLEPRVPRYSAFIKFVDAFILRRGI HQPIKTLRLECYSCPVFKVEKWLKAAADCKVENLQICGPVLPCTIFSIKTLVVLKLRCVDFKGFSDVELPLLKTLHLDYV TFSKCQHFIELLNGCPLLENLEAKCISAAFVDDPKFTTLSKLVRADVFNLRRPLDIPMRTFCNVEFLRIDQFCDVDIPIF PNLIQLELMFGRHDLKWESVLDMLNHCPQLQTFDLENPSYTADKVWPNTHVVPKCFSSQLRTCILRNFKGKESGMRFAKF VMQNSALLDTMTIFSYRHLSLEEILEMRKELDSCPRSSASCELLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| ProSiteProfiles | 2 | 50 | 49 | 13.763 | ||
| PANTHER | 2 | 363 | 362 | 5.8E-76 | – | |
| PANTHER | 2 | 363 | 362 | 5.8E-76 | – | |
| SUPERFAMILY | 3 | 62 | 60 | 1.26E-13 | ||
| Pfam | 4 | 36 | 33 | 1.5E-10 | ||
| SMART | 8 | 48 | 41 | 5.8E-5 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 366 | 335 | - | – | |
| SUPERFAMILY | 113 | 305 | 193 | 1.67E-7 | – | |
| Pfam | 292 | 333 | 42 | 5.7E-13 | ||
| SMART | 294 | 366 | 73 | 2.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0621700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…