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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0624300 |
| Transcript ID | LotjaGi1g1v0624300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription and mRNA export factor SUS1; TAIR: AT3G27100.1 transcription/mRNA export factor; Swiss-Prot: sp|Q6NQ54|SUS1_ARATH Transcription and mRNA export factor SUS1; TrEMBL-Plants: tr|A0A1J7HP79|A0A1J7HP79_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0624300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117153230..117155153) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCCAGAAAGGGAACCAACGCTTCAAGAGCTCATCAACATCAAGGTTTGTTAGTTCACTGGTTACTTGGTTCTTGAA CTCTGAAGTTGTTTGGTTTTGAATTTTGATGTTGTTGTTGGTTTTTGGATTGGTTGCTTGCTCAGTTGATTGAGAGTGGA GAGAAGGAGCGGTTGATGGAGCTTCTTAGGGAAAGGCTTGTGGATTGTGGTTGGAAGGATGAAATGAAAGCTATCTGCAG GTTTTTTTTAATCTCATATTTTCTTTCCTGATCCTGATTTGCAAGAAAAGTGTATTTATTATCAATTCAATGTTGCTTTG ATTGCCATGTTTTTTCTGTATTGGAAGTGGAGTAGTTTTACATTAATGTGTTATATTGGCTTAAGTGTACCTATTGTGGG GAAATAGAAGGATTAAGTTTGAACTTCAAAATTGAAAATTTATTCCCAATTTCCAATTCTATTTTTAAACTTCAGTTTTC CCCATTGTGCGCCAGTGTTGTTAATTGCGGTCATGGCGGAAAGCTGAAATCCTGCCATAATGATAATTAATGGTGGAATA TTGCGGCCATATGGCGGATATTTGATAACACTGTTGTGCGCTCAACAAGCATTAGCTCAGGGGGCACTTGCAGTTCTATG TAGAAACTTTTACATAGGGAAGCCGTCAGCCACACACTGAGACACATTCTCTTATTCTTATACCTTTTTAATTCATTTTT GATATGCTAAGTATAAACAAAGATATGAAAGGTTCATTAATCCTGGTCACTCTAGGGGTTCTGGCATTATGCTTTTTAGG TTGATGTGTATTGTGTACTGAGACTGCAAAGACGGTTTGCCATGTCAAATTACTAAAGTGATTCCTTTCCAATCATCAGT GTTGTTAATTGTGGATGGTGGGTCATGGAAGAAAGCCGAAATCCCACCATCATGACAAATAATGGCGGGATATGGGGGAA TGTTGCGGCCATATGGCGGGATATCAGCCATGGGAGAAAGCCAAAAAACCGCCATGAGAAACTGCTATGACGGATATTTG ATAACACTGCCAATCATAAACTAAGTTTTCATGAGCACTATAATTGTGTCCTCCTCTGCCTTAGAAGTTCTAGCCATTTT GTAATGTACTGGCTCAATGAAGATACAACGTGGTTTGTTGTTCTTTTAATTTTATAGCCGCAGAGATAAGTAGTTGTTTC TATTCAAGTTGTGTACTTTTGGCTTGGAGCTTGCTCTGTGTATGCAGTGCTAGGTTCATTAGTACAAGCTTAATTTGCTT GCACTTAGCACTATCATGTATGGCTATGAGCCTATGACTATGAATACTGAAAATAGCTTTGTGATAACGCTAGATATTCT CACCCCATGTACATTCTTTCTTAATTTCCGGTTTTACTTCCCATTATAGTTATTTTCTAATTGTTTCCACCATTTTCTGT TCTTATTTTAGCACGCCTTCTGTTTATATGACTCAGAATCAGAATTTAATATGCCATTTTTCTACAGAGACTTTGTGAAG AAGAAAGGGAGGAATAATGTTACGGTAGACGAACTTGTACATGTAATCACTCCAAAGGGAAGAGGTATTGAGTTAATTAC TTCACAAATTTATTTTATTTCTTGTAAGCATAATGAGTAACGACACCTGATGGTTACTTGGTTGAAGCACTTCATTAGAC AAACACTTCTCAAGGAATTCTATATTTTGAGACACGTTTAGAGGCTCTTAACTTGCCTAGTATTATGTGTTCGAACATTA GAAGCTGAGCAATTGCATCGTATTGTTGGTTTCTTGCTTCAAAATTTCCAATTAACAATGTAGATAACTTGTTAAACTTG TCTTTTGCAGCCTCTATTCCTGATTCCGTAAAGGCTGAGCTGTTGCAGAGGATTCGCACATTTCTTGTATCTGCAGCTCT ATAA
CDS sequence (LotjaGi1g1v0624300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCAGAAAGGGAACCAACGCTTCAAGAGCTCATCAACATCAAGGTTTTTGATTGAGAGTGGAGAGAAGGAGCGGTT GATGGAGCTTCTTAGGGAAAGGCTTGTGGATTGTGGTTGGAAGGATGAAATGAAAGCTATCTGCAGAGACTTTGTGAAGA AGAAAGGGAGGAATAATGTTACGGTAGACGAACTTGTACATGTAATCACTCCAAAGGGAAGAGCCTCTATTCCTGATTCC GTAAAGGCTGAGCTGTTGCAGAGGATTCGCACATTTCTTGTATCTGCAGCTCTATAA
Protein sequence (LotjaGi1g1v0624300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQKGNQRFKSSSTSRFLIESGEKERLMELLRERLVDCGWKDEMKAICRDFVKKKGRNNVTVDELVHVITPKGRASIPDS VKAELLQRIRTFLVSAAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 97 | 97 | 1.2E-34 | ||
| Hamap | 9 | 96 | 88 | 20.168 | ||
| Pfam | 15 | 93 | 79 | 3.8E-31 | ||
| PANTHER | 18 | 98 | 81 | 1.4E-48 | – | |
| PANTHER | 18 | 98 | 81 | 1.4E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA complex | A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8. | ||
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. | ||
| Cellular component | Nuclear pore | Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. | ||
| Biological process | MRNA export from nucleus | The directed movement of mRNA from the nucleus to the cytoplasm. | ||
| Biological process | Positive regulation of transcription, DNA-templated | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0624300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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