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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0627600 |
| Transcript ID | LotjaGi1g1v0627600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G14080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FMU2|PP380_ARATH Pentatricopeptide repeat-containing protein At5g14080; TrEMBL-Plants: tr|A0A0B2R834|A0A0B2R834_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi1g1v0627600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117708756..117713937) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAGTGTCACTAAAGTGGGTAGAAATGCATCCACTTAAAGTAAAGCTCCTCCCCCCTCTAGGGGGATGAAAACTTGAC AACTTTGTGTGAGGGGAAGTTATTGGTATGGCCTTGTGGGAGGCTTTTTACTCATTTTAGGTGCGTTTTCTCCCTCTTTT GTGAGGACCTTCTATCATTTTAAGTAAGATTTTTCTATTTGGTATATGTCTCATTCAAGTAAGACATTTATATTCTTGTC TCATCCAAGTAAGACATTTGCTATCATTTTAAGTAAGATTTTTCTATTTGATATTGATATATTCTCTAAAAAGTATCTAT ATGTATTGTTCATTTAAGGAAGACATAACCATTTAAAAAAATACGGGGACTAAAATCAAATTAAAAGTGTTTGATGAAAA CCAATATTTTTGTGAAAATGCATGGCACCAAAATGTATTTAACCCTTTGCATGATCCAATTAGCCTGATATGAAAAGTTA CTGAGAGAGGAAGCAAGTGATGAAAGGTTCTTCTTCACCGGGAGAGTTAGCAGCGGCAATAAGCAGAGCCGTGATCTCCG CCGCAAAGAAACACACCACCGGATCAAAATACCACTACACATGGAGCTCCGACGTAGAGAAAACACTCCACACCACTCTC CTCCGCAATCACCACCACCACCACGACCAACACCACCTCACACCATCCCTTGTTGCCTCAGTGATCGACCCTTTCCTCCT CCCCCACCACCATCTCGCTCTCGGTTTCTTCAACTGGGCCTCTCAGCAACCACGCTTCTCCCACACCGCTTCCACCTTCC ACTCCATCCTCAAATCACTCTCCTCCAACCACCACCATAGCCACCATCACAACATGCTCCATTCTCTCCTCAAACAAGCT CAGTCTCTTAACTTCCCTATTCATCCCTCTGTTTTCCGTTCCATCATAGCCTCCCACATTTCCCGGAATAACCCACGCGC CGCATTTGACGTCTTCAATGACGTTGTTTCCCTCGCCCCCCACATTGGGGGGCCCACCTGCAACTCCCTGCTTGCCGCGC TAGCTTCTCGAGACGGTTGCTTGGACAGCGCCCGCAGGGTGTTTGGTGAAATGACCGTGAGGGGTGTCCCTCTCAGCACC CTGGGTTTTGGGGTGTTTGCTTGGAGGGTGTCCAAGGAGGGTAATGTAGGGAATTTAATGAGTGTTTTGGACGAGGTTAG GGAATGCGGTTCAGGGATTAACGGTTCGGTTGTCGCGGTTATGATTGTTCATGGGTTATGCCGCGCTGGCAGGGCCTCGG AGGCTTTGATGATGTTGGGGGAACTTAGGAGTAGGGGCTGGAAGCCTGATTTTATGGCTTACTGGGTTGTTGCAACGGCG TTTCGAGCGATGGGGGATGTCGTTGAGGAGCTGAAGGTTCTGAAGATGAAGAGGAAGTTAGGGGTGGCGCCGAGGATGAA TGATTATAGGGACTACATACTTGAATTGGTTTCGGAGAGGCGGGTTTGTGAGGCGAAGGAGCTCGGGGAGGTTATTGTTG GGGGCAATTTTCCTGGTGAGGATGATGTTCTTAATGTTTTAATTGGATCAATGTCAGGCGTTGATCCTGGTGCAGCAATT GTGTTTTTCAATTACATGGTTGAGAAGGAGAGGTTCCCGAGCATTGAGACCTTGGGAAGATTGAGTAGGAATTTGTGGAG GCATGGCAAGGTTGATGAATTGATGGAGGTGTTCCATGTTTTGGACTGTGGGAATTGCTTCAAAGATGTGGAGGGTTACA ATGTGATGGTTTCATGGTTGTGCAAGGTTGGGAGAGTGAAAGAAGGCTATGCTGTTCTTCAGGAGATGAAGAAGAAAGGG GTGAGCCCCAATGTGGAGTCTTATAACTATGTCATGGAAGCTTGTTGTAAGGAGGATATGCTGCGCCCTGCAAGGAAGCT CTGGGATGAGATGTTTTCAAGTGGCTGTTGCGGGAACTTGAGAACCTATAATATTCTAATAAGTAAGTTTTCTGAAGAGG GACAAATTGAAGAGGCTCAGATGCTCTTCAACCGCATGTTGGAAAAGTGTGTGACACCTGATGTTGCAACTTACACTTCT CTTCTGGAAGGGCTCTGCCAAGAAGACAAGATTGAAGCAGCTTTCGAGCTTTATAACAAGTCTGTCAAACAGGACATTAT TCTTGCAAGAGACATATTGAGCTCATTCATATCATCACTCTGCAAGAAAGGTATTAACCGCTTGAACAAATACTTCAATA AATTAACATGTTGCATGCTATGATGTTCTGTGTGTTATGAAATGATTGGCTTGTCAGCTTGCTGCCTTATGCAAGAAGTT GACATCTTGTCGTATTGTGTGTCTTCCATGTAGGACATCTAAGGGCTGCTTCCAAGCTGCTTTGCAGTCCCAATCTTGAA ATAGGACTTGCAGAGTCCCATGTAATTTTGTTGAAATGTTTGGCAGATACAAAAGAGATTCCTATTGCTATTGAGCACTT AAGGTGGGTTCAGGAAAACTCACCTTCTATGCTACAAGATATATGTACTGGGCTTTTAGCTTCTCTTTCTTCCGCTGCCT GCCCGGAGCCGATATTACAGTTTCTTCAAAGAATACAAGATGTGTTTGATTTCCAAGGTAAGAGTACTTCGAAGGAAATG TGCTACAGATGATTACAGCATGAGAAGGCTATCTGATTTGAGTACCGCCAGTATGCATGCAACATTAGTTAGCAAAATCT TCAAGGTAAGTGCGATTTAACAAAGCTATTTTAAGCGGATTGTTACCTGAGGAATTAATATTTTAAATTTGATGCACAAC AACAACAAGATCCTAGTATTAATTAATTATTTCAGTGTTTCATAGTGGAGACAAAATCAGTGATAAAGAAGTCATTGATT ATATTCAGAGGGTAGGAAGTCGTATATTTGCAATTTTAGACTACTTTTAATTGAAAGTTGATATATATTGCTTCTGTGTG GAAGGGTATTTTCTGTGTTTTGCCAGATATCCTCAAGTTAAGTGTTATAGATAATTAGATACTATATAAAGCATTTCATG TATCACCAAACAGTCTAATCTTTTAAACGGTTACTTCATAACATAGTATCGGAGCCTTTAAGATCTAGTGATCTAGAGTT CGTCCCTTTCTACGTTCTTCAAATAAAATGTTAAATTCAGCACATGGTAAGTATTTATATGCTTTGTTTATGCTTCAAAC CCAAAGAACTCTGATGATAAGTACCCATTGTTAGTTACTAGTACTTAGTAGATTAGGTAGTTAGTTAGTTTGACAGGAGT ATAGCTAGAGAGTGAGAGAGGAAATATTATAAATAAAAGGGAGATAGAGAGTATGGACATCTTTTTTTTTTGTGGGGGGG GGGGTGTTCATTTGTAATTGAACAGACCTGAAAAATCGAATATTCAGGAGTTTTAACAAAAAAATTCAATAAACAGTTTG TTCTTCTTCTTTAGTGCTTGTTCCTATCAGACCCTTTCTTGAAGAGTGAAGAGTGTGTTATATATATAGAGGATGTATCA TATGAGAAAGTGTTCTTATATGAGTTATTCATGATTAGATCTAACGGTTATGAGTTATTCTTATTTTCTCATATAAGAAC ACCTTTCTCATATGATACATCCTCTACACACACACATATTCATGGCTTAAACTTTGAGAGTAGTTGATTCATGACATTAA GTAAGCAGGACGCATCTCGCATGCTTGTTTGAATTTCATTATTTTTATAGCACAATGATGTGATAGGTTTAGAGAGAGAA GAGATCGGAAGAGAGAAAGAGGGGGAAAGAAAACTGTCAATCTATTCAGTTACCAACAGAATGAGCCAATCTTGGCTTTT AACAAAATAGCTGAGCAATTCAGCTTCCTAACCAACTAACTTCCTGACAATTAACCACAAACTAACTATACTACTAATAC ATGTGTGACCCTCAGCATCCTTTTACTCTCATTTTCCGCATTGCTGATTGCATGATCTAGCTCTCAACTTGTTTACCAAG TTGAATGGAGGAAGATACATGCTCATTCATAATTGATGTTCCTTTTTTCATTTTCAGTTATCATTTATTTTATTTATCAA ATTTCAGTTGGTTCCTCTATTCTTCCGGCAAAGGTTATATGACCTTGCTTTCTTCATCTGGTAGACACAGTTTAGAGTGC ATCTATTGGAAGAAGATAAAAGTGTATCACCACTGGGATTCTGACTTACTCAATAGTTAACGACTTGACATATAATGGTA GAAAACAACATTACCATTGTCCAGACTCCAGAAGGCAAGGATGGAAGCTTATCAGGTTAGCCAACATTTAATTGTGCTGT TAGGAAATGATAACCTCTTTAGCTTAGTTTCCTGTACTTAGGAAACTTGAAAATTAATTTGTTTTGGCTGGTAACTTTTT TGTCAGTTGAATTATACGGGTTCTATTACTTGTATATGATTATAAAAGCTGATTGACTCATCAAACGCGTATTTAACATT TTGAGCTTCGTTTTTCAGCATGGATTGTTCTAACCCAGTTTGGACGACTAATTTGCTTTCTCCTTTTTTTCATTATGTAG TAGATTTATGTTCGGCATGTTGATGAATCTCCTATATGCTAAGAGGCGGAGCAAGAACAACTTGTACAGTGTCTTGATCC CACAATTAAAGGCGAGCATCTGATATTTAATAGCTACACATCTGAAGTTCAACTCTTGACTACTTTTGTCCAATGTTCGC TAATATATGCTTGTCTACATGGGATGGAACTGGAATCATGCGCAGAAGATCATATGGAACTACTCTCAGATATCACAAGG ATATTCTGAGAGAACAGATTATGCATCAAAAGAGAGGAAACACCAACTGTTTATAGAAAGGCAAAAGATACATTTTATTT TGTCACAGATGTGTCTATTTGTGTATATAACATAGTTCTTCTCTATTTGATACCTGAAATGAATTTTTTTAATCGTTATG TATTACCCTGATATCACTCCACAACTGTAATTAGTCTAAACTGATATTACCCTAGTAAATAGTTTCTTTCATTTACGTTC AAATTACCAATGGTAGGGGAGCAGCCTCAACTGATAATACCTATATTTGATATTGTCTTCTAAGCAACCTTATAGTATCT ATGATACAATCATTGAGTTTTATACTTTTGGGAAATGATTATACTAGTTTAGGGTGGCAGTG
CDS sequence (LotjaGi1g1v0627600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGTTCTTCTTCACCGGGAGAGTTAGCAGCGGCAATAAGCAGAGCCGTGATCTCCGCCGCAAAGAAACACACCAC CGGATCAAAATACCACTACACATGGAGCTCCGACGTAGAGAAAACACTCCACACCACTCTCCTCCGCAATCACCACCACC ACCACGACCAACACCACCTCACACCATCCCTTGTTGCCTCAGTGATCGACCCTTTCCTCCTCCCCCACCACCATCTCGCT CTCGGTTTCTTCAACTGGGCCTCTCAGCAACCACGCTTCTCCCACACCGCTTCCACCTTCCACTCCATCCTCAAATCACT CTCCTCCAACCACCACCATAGCCACCATCACAACATGCTCCATTCTCTCCTCAAACAAGCTCAGTCTCTTAACTTCCCTA TTCATCCCTCTGTTTTCCGTTCCATCATAGCCTCCCACATTTCCCGGAATAACCCACGCGCCGCATTTGACGTCTTCAAT GACGTTGTTTCCCTCGCCCCCCACATTGGGGGGCCCACCTGCAACTCCCTGCTTGCCGCGCTAGCTTCTCGAGACGGTTG CTTGGACAGCGCCCGCAGGGTGTTTGGTGAAATGACCGTGAGGGGTGTCCCTCTCAGCACCCTGGGTTTTGGGGTGTTTG CTTGGAGGGTGTCCAAGGAGGGTAATGTAGGGAATTTAATGAGTGTTTTGGACGAGGTTAGGGAATGCGGTTCAGGGATT AACGGTTCGGTTGTCGCGGTTATGATTGTTCATGGGTTATGCCGCGCTGGCAGGGCCTCGGAGGCTTTGATGATGTTGGG GGAACTTAGGAGTAGGGGCTGGAAGCCTGATTTTATGGCTTACTGGGTTGTTGCAACGGCGTTTCGAGCGATGGGGGATG TCGTTGAGGAGCTGAAGGTTCTGAAGATGAAGAGGAAGTTAGGGGTGGCGCCGAGGATGAATGATTATAGGGACTACATA CTTGAATTGGTTTCGGAGAGGCGGGTTTGTGAGGCGAAGGAGCTCGGGGAGGTTATTGTTGGGGGCAATTTTCCTGGTGA GGATGATGTTCTTAATGTTTTAATTGGATCAATGTCAGGCGTTGATCCTGGTGCAGCAATTGTGTTTTTCAATTACATGG TTGAGAAGGAGAGGTTCCCGAGCATTGAGACCTTGGGAAGATTGAGTAGGAATTTGTGGAGGCATGGCAAGGTTGATGAA TTGATGGAGGTGTTCCATGTTTTGGACTGTGGGAATTGCTTCAAAGATGTGGAGGGTTACAATGTGATGGTTTCATGGTT GTGCAAGGTTGGGAGAGTGAAAGAAGGCTATGCTGTTCTTCAGGAGATGAAGAAGAAAGGGGTGAGCCCCAATGTGGAGT CTTATAACTATGTCATGGAAGCTTGTTGTAAGGAGGATATGCTGCGCCCTGCAAGGAAGCTCTGGGATGAGATGTTTTCA AGTGGCTGTTGCGGGAACTTGAGAACCTATAATATTCTAATAAGTAAGTTTTCTGAAGAGGGACAAATTGAAGAGGCTCA GATGCTCTTCAACCGCATGTTGGAAAAGTGTGTGACACCTGATGTTGCAACTTACACTTCTCTTCTGGAAGGGCTCTGCC AAGAAGACAAGATTGAAGCAGCTTTCGAGCTTTATAACAAGTCTGTCAAACAGGACATTATTCTTGCAAGAGACATATTG AGCTCATTCATATCATCACTCTGCAAGAAAGGACATCTAAGGGCTGCTTCCAAGCTGCTTTGCAGTCCCAATCTTGAAAT AGGACTTGCAGAGTCCCATGTAATTTTGTTGAAATGTTTGGCAGATACAAAAGAGATTCCTATTGCTATTGAGCACTTAA GGTGGGTTCAGGAAAACTCACCTTCTATGCTACAAGATATATGTACTGGGCTTTTAGCTTCTCTTTCTTCCGCTGCCTGC CCGGAGCCGATATTACAGTTTCTTCAAAGAATACAAGATGTGTTTGATTTCCAAGGTAAGAGTACTTCGAAGGAAATGTG CTACAGATGA
Protein sequence (LotjaGi1g1v0627600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGSSSPGELAAAISRAVISAAKKHTTGSKYHYTWSSDVEKTLHTTLLRNHHHHHDQHHLTPSLVASVIDPFLLPHHHLA LGFFNWASQQPRFSHTASTFHSILKSLSSNHHHSHHHNMLHSLLKQAQSLNFPIHPSVFRSIIASHISRNNPRAAFDVFN DVVSLAPHIGGPTCNSLLAALASRDGCLDSARRVFGEMTVRGVPLSTLGFGVFAWRVSKEGNVGNLMSVLDEVRECGSGI NGSVVAVMIVHGLCRAGRASEALMMLGELRSRGWKPDFMAYWVVATAFRAMGDVVEELKVLKMKRKLGVAPRMNDYRDYI LELVSERRVCEAKELGEVIVGGNFPGEDDVLNVLIGSMSGVDPGAAIVFFNYMVEKERFPSIETLGRLSRNLWRHGKVDE LMEVFHVLDCGNCFKDVEGYNVMVSWLCKVGRVKEGYAVLQEMKKKGVSPNVESYNYVMEACCKEDMLRPARKLWDEMFS SGCCGNLRTYNILISKFSEEGQIEEAQMLFNRMLEKCVTPDVATYTSLLEGLCQEDKIEAAFELYNKSVKQDIILARDIL SSFISSLCKKGHLRAASKLLCSPNLEIGLAESHVILLKCLADTKEIPIAIEHLRWVQENSPSMLQDICTGLLASLSSAAC PEPILQFLQRIQDVFDFQGKSTSKEMCYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 76 | 245 | 170 | 3.6E-15 | ||
| PANTHER | 89 | 337 | 249 | 5.7E-64 | – | |
| ProSiteProfiles | 135 | 165 | 31 | 5.097 | ||
| ProSiteProfiles | 170 | 205 | 36 | 9.065 | ||
| Pfam | 183 | 203 | 21 | 0.8 | ||
| ProSiteProfiles | 242 | 276 | 35 | 9.788 | ||
| Gene3D | 246 | 338 | 93 | 9.2E-7 | ||
| TIGRFAM | 248 | 277 | 30 | 3.9E-6 | ||
| Pfam | 249 | 273 | 25 | 0.012 | ||
| ProSiteProfiles | 277 | 311 | 35 | 6.741 | ||
| Gene3D | 339 | 473 | 135 | 3.4E-22 | ||
| PANTHER | 362 | 494 | 133 | 5.7E-64 | – | |
| ProSiteProfiles | 381 | 415 | 35 | 5.546 | ||
| Pfam | 415 | 464 | 50 | 7.9E-15 | ||
| ProSiteProfiles | 416 | 450 | 35 | 12.715 | ||
| TIGRFAM | 420 | 452 | 33 | 8.1E-9 | ||
| ProSiteProfiles | 451 | 485 | 35 | 10.567 | ||
| TIGRFAM | 454 | 486 | 33 | 7.4E-6 | ||
| PANTHER | 471 | 579 | 109 | 5.7E-64 | – | |
| Gene3D | 474 | 586 | 113 | 5.8E-24 | ||
| ProSiteProfiles | 486 | 520 | 35 | 11.871 | ||
| Pfam | 488 | 534 | 47 | 7.0E-14 | ||
| TIGRFAM | 489 | 522 | 34 | 1.5E-6 | ||
| ProSiteProfiles | 521 | 555 | 35 | 10.052 | ||
| TIGRFAM | 524 | 553 | 30 | 8.9E-5 | ||
| ProSiteProfiles | 556 | 591 | 36 | 5.185 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0627600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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