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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0627600 |
| Transcript ID | LotjaGi1g1v0627600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G14080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FMU2|PP380_ARATH Pentatricopeptide repeat-containing protein At5g14080; TrEMBL-Plants: tr|I1MLF3|I1MLF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0627600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117709256..117713823) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAGGTTCTTCTTCACCGGGAGAGTTAGCAGCGGCAATAAGCAGAGCCGTGATCTCCGCCGCAAAGAAACACACCACC GGATCAAAATACCACTACACATGGAGCTCCGACGTAGAGAAAACACTCCACACCACTCTCCTCCGCAATCACCACCACCA CCACGACCAACACCACCTCACACCATCCCTTGTTGCCTCAGTGATCGACCCTTTCCTCCTCCCCCACCACCATCTCGCTC TCGGTTTCTTCAACTGGGCCTCTCAGCAACCACGCTTCTCCCACACCGCTTCCACCTTCCACTCCATCCTCAAATCACTC TCCTCCAACCACCACCATAGCCACCATCACAACATGCTCCATTCTCTCCTCAAACAAGCTCAGTCTCTTAACTTCCCTAT TCATCCCTCTGTTTTCCGTTCCATCATAGCCTCCCACATTTCCCGGAATAACCCACGCGCCGCATTTGACGTCTTCAATG ACGTTGTTTCCCTCGCCCCCCACATTGGGGGGCCCACCTGCAACTCCCTGCTTGCCGCGCTAGCTTCTCGAGACGGTTGC TTGGACAGCGCCCGCAGGGTGTTTGGTGAAATGACCGTGAGGGGTGTCCCTCTCAGCACCCTGGGTTTTGGGGTGTTTGC TTGGAGGGTGTCCAAGGAGGGTAATGTAGGGAATTTAATGAGTGTTTTGGACGAGGTTAGGGAATGCGGTTCAGGGATTA ACGGTTCGGTTGTCGCGGTTATGATTGTTCATGGGTTATGCCGCGCTGGCAGGGCCTCGGAGGCTTTGATGATGTTGGGG GAACTTAGGAGTAGGGGCTGGAAGCCTGATTTTATGGCTTACTGGGTTGTTGCAACGGCGTTTCGAGCGATGGGGGATGT CGTTGAGGAGCTGAAGGTTCTGAAGATGAAGAGGAAGTTAGGGGTGGCGCCGAGGATGAATGATTATAGGGACTACATAC TTGAATTGGTTTCGGAGAGGCGGGTTTGTGAGGCGAAGGAGCTCGGGGAGGTTATTGTTGGGGGCAATTTTCCTGGTGAG GATGATGTTCTTAATGTTTTAATTGGATCAATGTCAGGCGTTGATCCTGGTGCAGCAATTGTGTTTTTCAATTACATGGT TGAGAAGGAGAGGTTCCCGAGCATTGAGACCTTGGGAAGATTGAGTAGGAATTTGTGGAGGCATGGCAAGGTTGATGAAT TGATGGAGGTGTTCCATGTTTTGGACTGTGGGAATTGCTTCAAAGATGTGGAGGGTTACAATGTGATGGTTTCATGGTTG TGCAAGGTTGGGAGAGTGAAAGAAGGCTATGCTGTTCTTCAGGAGATGAAGAAGAAAGGGGTGAGCCCCAATGTGGAGTC TTATAACTATGTCATGGAAGCTTGTTGTAAGGAGGATATGCTGCGCCCTGCAAGGAAGCTCTGGGATGAGATGTTTTCAA GTGGCTGTTGCGGGAACTTGAGAACCTATAATATTCTAATAAGTAAGTTTTCTGAAGAGGGACAAATTGAAGAGGCTCAG ATGCTCTTCAACCGCATGTTGGAAAAGTGTGTGACACCTGATGTTGCAACTTACACTTCTCTTCTGGAAGGGCTCTGCCA AGAAGACAAGATTGAAGCAGCTTTCGAGCTTTATAACAAGTCTGTCAAACAGGACATTATTCTTGCAAGAGACATATTGA GCTCATTCATATCATCACTCTGCAAGAAAGGTATTAACCGCTTGAACAAATACTTCAATAAATTAACATGTTGCATGCTA TGATGTTCTGTGTGTTATGAAATGATTGGCTTGTCAGCTTGCTGCCTTATGCAAGAAGTTGACATCTTGTCGTATTGTGT GTCTTCCATGTAGGACATCTAAGGGCTGCTTCCAAGCTGCTTTGCAGTCCCAATCTTGAAATAGGACTTGCAGAGTCCCA TGTAATTTTGTTGAAATGTTTGGCAGATACAAAAGAGATTCCTATTGCTATTGAGCACTTAAGGTGGGTTCAGGAAAACT CACCTTCTATGCTACAAGATATATGTACTGGGCTTTTAGCTTCTCTTTCTTCCGCTGCCTGCCCGGAGCCGATATTACAG TTTCTTCAAAGAATACAAGATGTGTTTGATTTCCAAGGTAAGAGTACTTCGAAGGAAATGTGCTACAGATGATTACAGCA TGAGAAGGCTATCTGATTTGAGTACCGCCAGTATGCATGCAACATTAGTTAGCAAAATCTTCAAGGTAAGTGCGATTTAA CAAAGCTATTTTAAGCGGATTGTTACCTGAGGAATTAATATTTTAAATTTGATGCACAACAACAACAAGATCCTAGTATT AATTAATTATTTCAGTGTTTCATAGTGGAGACAAAATCAGTGATAAAGAAGTCATTGATTATATTCAGAGGGTAGGAAGT CGTATATTTGCAATTTTAGACTACTTTTAATTGAAAGTTGATATATATTGCTTCTGTGTGGAAGGGTATTTTCTGTGTTT TGCCAGATATCCTCAAGTTAAGTGTTATAGATAATTAGATACTATATAAAGCATTTCATGTATCACCAAACAGTCTAATC TTTTAAACGGTTACTTCATAACATAGTATCGGAGCCTTTAAGATCTAGTGATCTAGAGTTCGTCCCTTTCTACGTTCTTC AAATAAAATGTTAAATTCAGCACATGGTAAGTATTTATATGCTTTGTTTATGCTTCAAACCCAAAGAACTCTGATGATAA GTACCCATTGTTAGTTACTAGTACTTAGTAGATTAGGTAGTTAGTTAGTTTGACAGGAGTATAGCTAGAGAGTGAGAGAG GAAATATTATAAATAAAAGGGAGATAGAGAGTATGGACATCTTTTTTTTTTGTGGGGGGGGGGGTGTTCATTTGTAATTG AACAGACCTGAAAAATCGAATATTCAGGAGTTTTAACAAAAAAATTCAATAAACAGTTTGTTCTTCTTCTTTAGTGCTTG TTCCTATCAGACCCTTTCTTGAAGAGTGAAGAGTGTGTTATATATATAGAGGATGTATCATATGAGAAAGTGTTCTTATA TGAGTTATTCATGATTAGATCTAACGGTTATGAGTTATTCTTATTTTCTCATATAAGAACACCTTTCTCATATGATACAT CCTCTACACACACACATATTCATGGCTTAAACTTTGAGAGTAGTTGATTCATGACATTAAGTAAGCAGGACGCATCTCGC ATGCTTGTTTGAATTTCATTATTTTTATAGCACAATGATGTGATAGGTTTAGAGAGAGAAGAGATCGGAAGAGAGAAAGA GGGGGAAAGAAAACTGTCAATCTATTCAGTTACCAACAGAATGAGCCAATCTTGGCTTTTAACAAAATAGCTGAGCAATT CAGCTTCCTAACCAACTAACTTCCTGACAATTAACCACAAACTAACTATACTACTAATACATGTGTGACCCTCAGCATCC TTTTACTCTCATTTTCCGCATTGCTGATTGCATGATCTAGCTCTCAACTTGTTTACCAAGTTGAATGGAGGAAGATACAT GCTCATTCATAATTGATGTTCCTTTTTTCATTTTCAGTTATCATTTATTTTATTTATCAAATTTCAGTTGGTTCCTCTAT TCTTCCGGCAAAGGTTATATGACCTTGCTTTCTTCATCTGGTAGACACAGTTTAGAGTGCATCTATTGGAAGAAGATAAA AGTGTATCACCACTGGGATTCTGACTTACTCAATAGTTAACGACTTGACATATAATGGTAGAAAACAACATTACCATTGT CCAGACTCCAGAAGGCAAGGATGGAAGCTTATCAGGTTAGCCAACATTTAATTGTGCTGTTAGGAAATGATAACCTCTTT AGCTTAGTTTCCTGTACTTAGGAAACTTGAAAATTAATTTGTTTTGGCTGGTAACTTTTTTGTCAGTTGAATTATACGGG TTCTATTACTTGTATATGATTATAAAAGCTGATTGACTCATCAAACGCGTATTTAACATTTTGAGCTTCGTTTTTCAGCA TGGATTGTTCTAACCCAGTTTGGACGACTAATTTGCTTTCTCCTTTTTTTCATTATGTAGTAGATTTATGTTCGGCATGT TGATGAATCTCCTATATGCTAAGAGGCGGAGCAAGAACAACTTGTACAGTGTCTTGATCCCACAATTAAAGGCGAGCATC TGATATTTAATAGCTACACATCTGAAGTTCAACTCTTGACTACTTTTGTCCAATGTTCGCTAATATATGCTTGTCTACAT GGGATGGAACTGGAATCATGCGCAGAAGATCATATGGAACTACTCTCAGATATCACAAGGATATTCTGAGAGAACAGATT ATGCATCAAAAGAGAGGAAACACCAACTGTTTATAGAAAGGCAAAAGATACATTTTATTTTGTCACAGATGTGTCTATTT GTGTATATAACATAGTTCTTCTCTATTTGATACCTGAAATGAATTTTTTTAATCGTTATGTATTACCCTGATATCACTCC ACAACTGTAATTAGTCTAAACTGATATTACCCTAGTAAATAGTTTCTTTCATTTACGTTCAAATTACCAATGGTAGGGGA GCAGCCTC
CDS sequence (LotjaGi1g1v0627600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCATTCTCTCCTCAAACAAGCTCAGTCTCTTAACTTCCCTATTCATCCCTCTGTTTTCCGTTCCATCATAGCCTC CCACATTTCCCGGAATAACCCACGCGCCGCATTTGACGTCTTCAATGACGTTGTTTCCCTCGCCCCCCACATTGGGGGGC CCACCTGCAACTCCCTGCTTGCCGCGCTAGCTTCTCGAGACGGTTGCTTGGACAGCGCCCGCAGGGTGTTTGGTGAAATG ACCGTGAGGGGTGTCCCTCTCAGCACCCTGGGTTTTGGGGTGTTTGCTTGGAGGGTGTCCAAGGAGGGTAATGTAGGGAA TTTAATGAGTGTTTTGGACGAGGTTAGGGAATGCGGTTCAGGGATTAACGGTTCGGTTGTCGCGGTTATGATTGTTCATG GGTTATGCCGCGCTGGCAGGGCCTCGGAGGCTTTGATGATGTTGGGGGAACTTAGGAGTAGGGGCTGGAAGCCTGATTTT ATGGCTTACTGGGTTGTTGCAACGGCGTTTCGAGCGATGGGGGATGTCGTTGAGGAGCTGAAGGTTCTGAAGATGAAGAG GAAGTTAGGGGTGGCGCCGAGGATGAATGATTATAGGGACTACATACTTGAATTGGTTTCGGAGAGGCGGGTTTGTGAGG CGAAGGAGCTCGGGGAGGTTATTGTTGGGGGCAATTTTCCTGGTGAGGATGATGTTCTTAATGTTTTAATTGGATCAATG TCAGGCGTTGATCCTGGTGCAGCAATTGTGTTTTTCAATTACATGGTTGAGAAGGAGAGGTTCCCGAGCATTGAGACCTT GGGAAGATTGAGTAGGAATTTGTGGAGGCATGGCAAGGTTGATGAATTGATGGAGGTGTTCCATGTTTTGGACTGTGGGA ATTGCTTCAAAGATGTGGAGGGTTACAATGTGATGGTTTCATGGTTGTGCAAGGTTGGGAGAGTGAAAGAAGGCTATGCT GTTCTTCAGGAGATGAAGAAGAAAGGGGTGAGCCCCAATGTGGAGTCTTATAACTATGTCATGGAAGCTTGTTGTAAGGA GGATATGCTGCGCCCTGCAAGGAAGCTCTGGGATGAGATGTTTTCAAGTGGCTGTTGCGGGAACTTGAGAACCTATAATA TTCTAATAAGTAAGTTTTCTGAAGAGGGACAAATTGAAGAGGCTCAGATGCTCTTCAACCGCATGTTGGAAAAGTGTGTG ACACCTGATGTTGCAACTTACACTTCTCTTCTGGAAGGGCTCTGCCAAGAAGACAAGATTGAAGCAGCTTTCGAGCTTTA TAACAAGTCTGTCAAACAGGACATTATTCTTGCAAGAGACATATTGAGCTCATTCATATCATCACTCTGCAAGAAAGGAC ATCTAAGGGCTGCTTCCAAGCTGCTTTGCAGTCCCAATCTTGAAATAGGACTTGCAGAGTCCCATGTAATTTTGTTGAAA TGTTTGGCAGATACAAAAGAGATTCCTATTGCTATTGAGCACTTAAGGTGGGTTCAGGAAAACTCACCTTCTATGCTACA AGATATATGTACTGGGCTTTTAGCTTCTCTTTCTTCCGCTGCCTGCCCGGAGCCGATATTACAGTTTCTTCAAAGAATAC AAGATGTGTTTGATTTCCAAGGTAAGAGTACTTCGAAGGAAATGTGCTACAGATGA
Protein sequence (LotjaGi1g1v0627600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHSLLKQAQSLNFPIHPSVFRSIIASHISRNNPRAAFDVFNDVVSLAPHIGGPTCNSLLAALASRDGCLDSARRVFGEM TVRGVPLSTLGFGVFAWRVSKEGNVGNLMSVLDEVRECGSGINGSVVAVMIVHGLCRAGRASEALMMLGELRSRGWKPDF MAYWVVATAFRAMGDVVEELKVLKMKRKLGVAPRMNDYRDYILELVSERRVCEAKELGEVIVGGNFPGEDDVLNVLIGSM SGVDPGAAIVFFNYMVEKERFPSIETLGRLSRNLWRHGKVDELMEVFHVLDCGNCFKDVEGYNVMVSWLCKVGRVKEGYA VLQEMKKKGVSPNVESYNYVMEACCKEDMLRPARKLWDEMFSSGCCGNLRTYNILISKFSEEGQIEEAQMLFNRMLEKCV TPDVATYTSLLEGLCQEDKIEAAFELYNKSVKQDIILARDILSSFISSLCKKGHLRAASKLLCSPNLEIGLAESHVILLK CLADTKEIPIAIEHLRWVQENSPSMLQDICTGLLASLSSAACPEPILQFLQRIQDVFDFQGKSTSKEMCYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 127 | 126 | 3.7E-10 | ||
| ProSiteProfiles | 17 | 47 | 31 | 5.097 | ||
| PANTHER | 19 | 219 | 201 | 1.8E-60 | – | |
| ProSiteProfiles | 52 | 87 | 36 | 9.065 | ||
| Pfam | 65 | 85 | 21 | 0.64 | ||
| ProSiteProfiles | 124 | 158 | 35 | 9.788 | ||
| Gene3D | 128 | 222 | 95 | 6.1E-7 | ||
| TIGRFAM | 130 | 159 | 30 | 3.1E-6 | ||
| Pfam | 131 | 155 | 25 | 0.0092 | ||
| ProSiteProfiles | 159 | 193 | 35 | 6.741 | ||
| Gene3D | 223 | 355 | 133 | 2.6E-22 | ||
| PANTHER | 244 | 365 | 122 | 1.8E-60 | – | |
| ProSiteProfiles | 263 | 297 | 35 | 5.546 | ||
| Pfam | 297 | 346 | 50 | 6.2E-15 | ||
| ProSiteProfiles | 298 | 332 | 35 | 12.715 | ||
| TIGRFAM | 302 | 334 | 33 | 6.4E-9 | ||
| ProSiteProfiles | 333 | 367 | 35 | 10.567 | ||
| TIGRFAM | 336 | 368 | 33 | 5.9E-6 | ||
| PANTHER | 353 | 461 | 109 | 1.8E-60 | – | |
| Gene3D | 356 | 469 | 114 | 4.2E-24 | ||
| ProSiteProfiles | 368 | 402 | 35 | 11.871 | ||
| Pfam | 370 | 416 | 47 | 5.5E-14 | ||
| TIGRFAM | 371 | 404 | 34 | 1.2E-6 | ||
| ProSiteProfiles | 403 | 437 | 35 | 10.052 | ||
| TIGRFAM | 406 | 435 | 30 | 7.0E-5 | ||
| ProSiteProfiles | 438 | 473 | 36 | 5.185 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0627600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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