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LotjaGi1g1v0630300.1

Overview

Field Value
Gene ID LotjaGi1g1v0630300
Transcript ID LotjaGi1g1v0630300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Endosomal targeting BRO1-like domain protein; TAIR: AT5G14020.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A151T941|A0A151T941_CAJCA BRO1 domain-containing protein BROX isogeny; Found in the gene: LotjaGi1g1v0630300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:118340209..118345005) extracted from Lotus japonicus Gifu genome v1.2.

TAGCATTTTACATGGGAACCAATCATAAGAAATCTTCTTTTAGAATCACCTCATCCCAAAGCTATGATCGATTGGTTACA TTTTACGTTTCTCAATCAATCAAATACACCCTCGAGTAGTAGCCAAATTCAAAGTATAATAGCAAGGTTGGTTCCTCACA TCTCGAGAGGAAGCAAATCCTCATAGTAACACTAATACCACTTGGCCACACGTCCTACAACACAAGTTGAGCGTTTACTA AATCGAAAAAAATACACATAAACTGAACGTGCTCCTATCAACGAAGCAGAGACTTATACGCTATGGCCATGTGACACATT TATCGGTTCTTGAGCTTCCAATTCACTCAGTCAGATTCAGATAGATTATAGATACCTTATTATTAACATGTTCTGTTCTG CCTTTCCTCGAATCTTCCCTGCACTCTCTTCTCTCCTCTCTGTATCCAGTAAGTTATTCTCTTTTAATATTCTCTTATTC TCTTCTTCCATGTTTTCTCAACTTGTTAGTGTGTGTTTCCTTTTTCTTGCTACCCCATGATTTGAATTTTCTTAATTTTT TTCATTTATGAATCAGCAACATTTGAATCTACCAGCTTTAACTGTCCTTTATGTTCCATACATTTGCTACTGTCATTATA ACTTTTTCTTGTTGAATAAAGTACCCTGCTATTTGTAGGATGTATGTTTGAAAATCTTTCTACAATTTATTCTGAAGTCA AAATCAATTATGTCGAGAAGCTTTCATGAGTAGATTCTATGAGCAAACATGCATGATAAATGATTTCTCTTTGAGTTTAA TACATAAGATCTTAACACATGACATGTTATAATTATATAGCATGTAACATATACTACTTCGTGCATATTTGGATACATGG TGGACAAAAAACTAAGGTGATCGAAAATCACGATAAATAAAAGCAACTTCTCTTAGCTTTTGTGACTGTTCACTGTGATT TTTCATTCACCATGGCGGTGTATCCAAACATGCAGTTAGTGAGAAAAGTATTTTGCTTGTTGTAACATGCTATTTCACCA CCCAATCAGTGCTCATAATTAAAAGTGCAGTAAGATGAAGTTTTCAATTTTCACCCATTACAGTAGTGCTCAATTCCAGC ACTTTTATGCTCTTAAATGTGCCAACTATGCTTTATCTTAAGTCACATCCTTTTTTCCCATTCAGTACCTCATCATGCCC ATATTATCATCATCAATGCTCTTTTTCCCCACACTTGCCAATCTCTTGCACTTAAGTTGAGTTAAAATGGATGGTTGATT TGGTGTAGGAAGTAATGCTTGAAAGAATTCCTTGTCATACGAAAAAATGGGGTGCTCTTACTCTGCATACAGGAAGAAGA AATCAAGCTTTCCTGAAGTTGTGGTCTTAGTTCCATCAACCAGAATTCCAGTGCAATCTGATCTTCAAAGAGCACTTAAA GGATTAGTTCCAAAGGACCTTGCTGATAAATTATCTTCGCTTCGGAACCAGATAGTGTTGGTAGCAGAAGATACTGGTAT TGTATTAACTATTGTCTTTCTTCTTACTTCACAGAGAAATTCTAAATTTCTTATGGAATGAGTAGGAAAGTAAAAATGTT TTTGTGGTCTGAAATTTGAATATTTGGTGCAGACGGATCACCTATACCTGAATTGAGGCGAGCTTTGAATGAATACTTAT CGGTTCTGATTGGACTCACTAAGAAAGGTTCCATAAATTAACACATTATATACCACTCTTCTAAAAAATCTTTCTATTTG CTCTCCATTTCTCATGTTGGTTACAATTTTCTTATGTTGCAGAGTATGGTCTTGATGGATTAATAGAATTCAAGTGGAAA AATTTCAATGATGGAAGACAAGTATGGCCATAATCTAACTCAATATTTCTTTTAATTATTTTGATCATTGAGTTTTTAGT CTCTTTAATATGGTAATGTGCAACTTGCAGGATAGCAATATAGCAAATGTCTGGTTTGAAGTGCTATCTGCTGTTCATTT TATGGCTATGCTAGCACTTTCAGAGGCTGATTCACTGATGATTCCAAAGGATCATTCAGGCTCTGGATTCAGGGTTGTAT CTTCAGGTTGTGTGCCAATACATAAGTTTTTAACCTTTAGATAAGGGTCCATAAATTGAGCAATTAAGAGATGAACAATT ATTGATCATTGATCTTGGATTTTTTGTACTGTCAGATAACAAGAGGGAAGCAATTGATTTGCTACTCAAGGCATCAGGAT ACCTGGAGTTCTGTCTCAGGCATATTCTTACTCGGATGCCCGCCGAAACCAAGTATGTCTCTATAGATTTTGTCTGCAAA AACAGTTTTAGACCAGCATTGAACAATGAACAGCCAAGTAAGCAATTTACCTTCAAATAATATCCAGGAAAATTTTACCC CAAGATTTGCAGCAAGGTGTTTTGGAGGCTATAGCTATTCAAGCACTGGGCCAGGTATTTAGTGGTCTATGTCTCTGAAA TCTGGATATATGTGTACAAACATTTAATTCTTCTAGTCATTCACATTGCAATGGTAGAATTTTCATCTCCACATTATATC AAATACTATTCCATTCATATTTTGTTGTTCCAATTATTGGATTGTGAGGACGATTTTCGTTTTGTTTTCTCTTCTATTAA AATGCATTAAGGACATTCTAAAACTGTTGGGAATAAGGGAGGGGACGCGTACACCTAATACCATAAGGTTTTAGATGAAG TATATGGTGTCCAATCAACTTGTGTGGTTTTCTCTTAACTAAATCATGGAGATCTCTTAGGAGTTTTAGGCGTCTCACAA CCCAACATAAACATGGAACCCTATTCTTCATTTTTGATTCTCTTAACTAGTTGTTAATACAGCTTGTAAAACTAGTCTCT GGATTAGGTATAACAGCTCATGTTCATGACAATTTTAGGGAACTGAGATTCAGCTTGGTCTTGCTGTTGAAAGTCAGAAG GCAAGTTTGTCTGTCAAGAGAAGGTTGGCATGTGAACAGCTGATATACTTCAGTCAGGTCCTTACTTCAATTCTTAATGC TTTAAGTTACTAACTTTACATCTCCAACCATTCTTGCTTCTCAAACATTTCCTTTTAACACTAGTTTTTAAAGTTCTGGT GATGATTGTTGTTTCACAATTAATGTTTTTCTCACTAATATTACCAGGCTTTTCACTGCTTGACTGGATGTGAGTCATGT GACTTGAACCAAGGGCATGCAAAGAAACATCTCAGGTTCATCAAATGGAAATTCCTTGAAACCAAGGTTGGTAACACTAT CAATGTGCATGTTTGGACACACGGTGGAAAATCAGAGTGAAGCCAAAATTACAGTGAACTGAAGCAACTTGGCTTAGCTT TTGCGACCGTCCACCATGATTTTGATCTCACTTTGGTTTTTCACCGTGTATCAAAAAATATTGGTTGAATTCCTCCCACC AAAAGATAAACCTTAAGAGTATCCAATAATATGAATGATGATGTCCTGATAGTTTTTTATAATGTTGTCAGGCTGCAGCT TACTACTACCATGGTCTGATCCTTGACAAAGGTAATGAACCAAGTGGTCACATCAGCGCAGTGTCTTGTTTTCTTGCTGC AGAAGAACTGCTAGCTGAAAGCAAGAAGGCCTGTTTGAGCTTTTGCCTTGCAGCTCCTGTGACAAGGTAGGTTTGGATCT TCTGCTTTTGTTTGAGAATGTTTTCTGTTACCTTGATCACTATGCGCAAGGTCCAGTAGCCTTATCTTGTATTTTCGAAA GAGGGTGTTTCTACCGCTCGAACCTGTGACTGCAAAGTCACATGGCAACAACCTAAATGTTGCATCGAGATTATCCCTCT TACATCGAGATTATCCCTCTTACTAGTACATTGCTTTATCTTACAACTTTTTTTTCCCAATTTTTCAAGGGCTCCTCCAC TATGGGGTGCTATGAAGCATTTAAATCAGAAAATTCCTGAAGTTGCATCAAGGAAGTCTCAGATGTATGGCTACCTCTTG GAGCAAGAAAAGTAGGGAGTTTTCTCTGTTACTACTCTGACATTCTCATTTGATGTTCTAACTAAATGCTTTACTACCTT GAAATATAATGATCCATATTAAGGTATCGGTCGTTTTTACGATGACTGCTGAATGCCTAATACAACCCTCCTCCTTTACT GCCTGACATGAAAAAATGGATTTTTTCTAATGATGCAGGGGTCTTCAAGCATTGCCAGACCTACCAGAGTTCCAATTGTC ATTACGTCCAGATGATTATGAACTTCCTGAGATTGATCCAGCATGGGATAGTAATCATTGGGAAACTCTAGGACAACCAT TGAAGGAGCACCTTAGAGATAGTGATGAGAATGCAGCTGATTGATTCACTTATATGATCTTCTTTAATTTCTTTTCTATT TGTAGTTAAATTTGTACACCTTATTGTTTATCAAACTCGTACAAATGCTAACATTACCATAGAAATACCTATGTTTATCC AATTCACATGTGTATCACAAATTGATCACTAGCTACAAGAAATAGTAAGACATAGATATATCGATCAAATCCAGATGGTG CTTTTGTAATGGGTACTTCTGTTGGTGTAATGGATGTCATGATATCACTTTCTATGAACCAATTGAACCTGGTGATTGAT AGGCATAGCTTGTGATCATGTCGCATTTTTTTAAGTTTCTTCCTTCCAGTGTGATTTCTTTTATGTGTCAAGAATAACTT GTGTAGTATTGTTTTCTTTTTCAATTTTCCTATGTAAAAAAAGATAACAATTTTCAAAATAAAATTCCATTCACCTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0630300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGTGCTCTTACTCTGCATACAGGAAGAAGAAATCAAGCTTTCCTGAAGTTGTGGTCTTAGTTCCATCAACCAGAAT TCCAGTGCAATCTGATCTTCAAAGAGCACTTAAAGGATTAGTTCCAAAGGACCTTGCTGATAAATTATCTTCGCTTCGGA ACCAGATAGTGTTGGTAGCAGAAGATACTGACGGATCACCTATACCTGAATTGAGGCGAGCTTTGAATGAATACTTATCG GTTCTGATTGGACTCACTAAGAAAGAGTATGGTCTTGATGGATTAATAGAATTCAAGTGGAAAAATTTCAATGATGGAAG ACAAGATAGCAATATAGCAAATGTCTGGTTTGAAGTGCTATCTGCTGTTCATTTTATGGCTATGCTAGCACTTTCAGAGG CTGATTCACTGATGATTCCAAAGGATCATTCAGGCTCTGGATTCAGGGTTGTATCTTCAGATAACAAGAGGGAAGCAATT GATTTGCTACTCAAGGCATCAGGATACCTGGAGTTCTGTCTCAGGCATATTCTTACTCGGATGCCCGCCGAAACCAAGAA AATTTTACCCCAAGATTTGCAGCAAGGTGTTTTGGAGGCTATAGCTATTCAAGCACTGGGCCAGGGAACTGAGATTCAGC TTGGTCTTGCTGTTGAAAGTCAGAAGGCAAGTTTGTCTGTCAAGAGAAGGTTGGCATGTGAACAGCTGATATACTTCAGT CAGGCTTTTCACTGCTTGACTGGATGTGAGTCATGTGACTTGAACCAAGGGCATGCAAAGAAACATCTCAGGTTCATCAA ATGGAAATTCCTTGAAACCAAGGCTGCAGCTTACTACTACCATGGTCTGATCCTTGACAAAGGTAATGAACCAAGTGGTC ACATCAGCGCAGTGTCTTGTTTTCTTGCTGCAGAAGAACTGCTAGCTGAAAGCAAGAAGGCCTGTTTGAGCTTTTGCCTT GCAGCTCCTGTGACAAGGGCTCCTCCACTATGGGGTGCTATGAAGCATTTAAATCAGAAAATTCCTGAAGTTGCATCAAG GAAGTCTCAGATGTATGGCTACCTCTTGGAGCAAGAAAAGGGTCTTCAAGCATTGCCAGACCTACCAGAGTTCCAATTGT CATTACGTCCAGATGATTATGAACTTCCTGAGATTGATCCAGCATGGGATAGTAATCATTGGGAAACTCTAGGACAACCA TTGAAGGAGCACCTTAGAGATAGTGATGAGAATGCAGCTGATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0630300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGCSYSAYRKKKSSFPEVVVLVPSTRIPVQSDLQRALKGLVPKDLADKLSSLRNQIVLVAEDTDGSPIPELRRALNEYLS VLIGLTKKEYGLDGLIEFKWKNFNDGRQDSNIANVWFEVLSAVHFMAMLALSEADSLMIPKDHSGSGFRVVSSDNKREAI DLLLKASGYLEFCLRHILTRMPAETKKILPQDLQQGVLEAIAIQALGQGTEIQLGLAVESQKASLSVKRRLACEQLIYFS QAFHCLTGCESCDLNQGHAKKHLRFIKWKFLETKAAAYYYHGLILDKGNEPSGHISAVSCFLAAEELLAESKKACLSFCL AAPVTRAPPLWGAMKHLNQKIPEVASRKSQMYGYLLEQEKGLQALPDLPEFQLSLRPDDYELPEIDPAWDSNHWETLGQP LKEHLRDSDENAAD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23032:SF2
1 411 411 2.2E-215 –
PANTHER
PTHR23032
1 411 411 2.2E-215
IPR038898
ProSiteProfiles
PS51180
4 414 411 12.197
IPR004328
CDD
cd09034
11 378 368 1.19454E-79 –
SMART
SM01041
19 385 367 2.9E-27
IPR004328
Gene3D
G3DSA:1.25.40.280
25 397 373 1.1E-37
IPR038499
Pfam
PF03097
46 312 267 5.1E-10
IPR004328

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0630300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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