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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004328
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.209s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0120659.1
n.a. Endosomal targeting BRO1-like domain-containing protein isoform 2 [Theobroma cacao] gi|508774320|gb|EOY21576.1| chr0 53589880 53596623 -
4 domain predictions
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Lj0g3v0288119.1
n.a. PREDICTED: ALG-2 interacting protein X-like [Glycine max] gi|356536236|ref|XP_003536645.1| chr0 149730692 149737864 +
5 domain predictions
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Lj1g3v3902600.1
n.a. BRO1 domain-containing protein BROX [Medicago truncatula] gi|357508279|ref|XP_003624428.1| chr1 45101967 45105593 -
5 domain predictions
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Lj2g3v0571330.1
n.a. Endosomal targeting BRO1-like domain-containing protein isoform 2 [Theobroma cacao] gi|508774320|gb|EOY21576.1| chr2 7683537 7692387 +
5 domain predictions
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Lj2g3v1168810.1
n.a. PREDICTED: programmed cell death 6-interacting protein-like [Glycine max] gi|356502464|ref|XP_003520039.1| chr2 18426511 18430817 +
5 domain predictions
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Lj2g3v1168810.2
n.a. PREDICTED: programmed cell death 6-interacting protein-like [Glycine max] gi|356502464|ref|XP_003520039.1| chr2 18427686 18430817 +
5 domain predictions
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Lj5g3v1236760.1
n.a. Endosomal targeting BRO1-like domain-containing protein isoform 2 [Theobroma cacao] gi|508774320|gb|EOY21576.1| chr5 19976413 19985295 -
5 domain predictions
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LotjaGi1g1v0630300.1
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT5G14020.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A151T941|A0A151T941_CAJCA BRO1 domain-containing protein BROX isogeny; Found in the gene: LotjaGi1g1v0630300 LjG1.1_chr1 118340209 118345005 -
4 domain predictions
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LotjaGi2g1v0174000.1
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1; TrEMBL-Plants: tr|A0A151T3S3|A0A151T3S3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0174000 LjG1.1_chr2 59156156 59165713 -
4 domain predictions
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LotjaGi2g1v0174000.2
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1; TrEMBL-Plants: tr|A0A151T3S3|A0A151T3S3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0174000 LjG1.1_chr2 59156504 59165643 -
4 domain predictions
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LotjaGi2g1v0174000.3
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1; TrEMBL-Plants: tr|A0A151T3S3|A0A151T3S3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0174000 LjG1.1_chr2 59156879 59163997 -
4 domain predictions
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LotjaGi2g1v0280400.1
n.a. BRO1 domain-containing protein; TAIR: AT1G13310.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q9W6C5|PDC6I_XENLA Programmed cell death 6-interacting protein; TrEMBL-Plants: tr|A0A151RZB7|A0A151RZB7_CAJCA BRO1 domain-containing protein BROX; Found in the gene: LotjaGi2g1v0280400 LjG1.1_chr2 75213165 75216452 +
4 domain predictions
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LotjaGi5g1v0198900.1
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A0L9TYL6|A0A0L9TYL6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0198900 LjG1.1_chr5 49632387 49641595 -
4 domain predictions
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LotjaGi5g1v0198900.2
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A0L9TYL6|A0A0L9TYL6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0198900 LjG1.1_chr5 49633033 49640008 -
4 domain predictions
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LotjaGi5g1v0198900.3
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A0L9TYL6|A0A0L9TYL6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0198900 LjG1.1_chr5 49633040 49640008 -
4 domain predictions
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LotjaGi5g1v0198900.4
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A072VNC3|A0A072VNC3_MEDTR Endosomal targeting BRO1-like domain protein; Found in the gene: LotjaGi5g1v0198900 LjG1.1_chr5 49633040 49640008 -
3 domain predictions
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LotjaGi5g1v0198900.5
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX; TrEMBL-Plants: tr|A0A0L9TYL6|A0A0L9TYL6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0198900 LjG1.1_chr5 49633040 49640098 -
4 domain predictions
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LotjaGi5g1v0198900.6
n.a. Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|P26955|IL3RB_MOUSE Cytokine receptor common subunit beta; TrEMBL-Plants: tr|A0A0L9TYL6|A0A0L9TYL6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0198900 LjG1.1_chr5 49634471 49640008 -
4 domain predictions
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LotjaGi5g1v0332400.1
n.a. ALG-2 interacting protein X; TAIR: AT1G15130.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q8T7K0|ALIX_DICDI ALG-2 interacting protein X; TrEMBL-Plants: tr|I1LEN7|I1LEN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0332400 LjG1.1_chr5 64959208 64967174 +
4 domain predictions
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LotjaGi5g1v0332400.2
n.a. ALG-2 interacting protein X; TAIR: AT1G15130.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q8T7K0|ALIX_DICDI ALG-2 interacting protein X; TrEMBL-Plants: tr|A0A0S3SM52|A0A0S3SM52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0332400 LjG1.1_chr5 64959290 64963678 +
4 domain predictions
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LotjaGi5g1v0332400.3
n.a. ALG-2 interacting protein X; TAIR: AT1G15130.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q8T7K0|ALIX_DICDI ALG-2 interacting protein X; TrEMBL-Plants: tr|I1LEN7|I1LEN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0332400 LjG1.1_chr5 64959290 64966192 +
4 domain predictions
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LotjaGi5g1v0332400.4
n.a. ALG-2 interacting protein X; TAIR: AT1G15130.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|Q8T7K0|ALIX_DICDI ALG-2 interacting protein X; TrEMBL-Plants: tr|I1LEN7|I1LEN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0332400 LjG1.1_chr5 64959299 64966192 +
4 domain predictions
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