Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0631000.1

Overview

Field Value
Gene ID LotjaGi1g1v0631000
Transcript ID LotjaGi1g1v0631000.1
Lotus japonicus genome version Gifu v1.2
Description GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G13200.1 GRAM domain family protein; Swiss-Prot: sp|Q9LYV6|GEML5_ARATH GEM-like protein 5; TrEMBL-Plants: tr|I3TA12|I3TA12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0631000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:118455156..118460039) extracted from Lotus japonicus Gifu genome v1.2.

AGAAAATCAAAATTATAAAAATACCCTTTCACGGTTTCACCTTATGTGTTCTCTTTCTTCCTATCCTTTCTCCCTTTTGC GGTGGTCATCGGAGCACCCTAACACTGAACTACCGCACGTCGTCCTCCTCAACGGAGAGCACTGCGACATCCTCTTCTCC ACCGTCGCCGACGCTGAGCAACTAGTTTATATGCTTCTTGCCTAGATCTGGGTAATGGGTTGGGTGGGTTTTGATGGGAT GGAGGTGCTTTGATCTTCAGGGTTGGGTTTTTTTAGTTGAGAGGGAAAGATCCAAACCCTAAATAGAACCACCACCCGAT TCTAACTACGATGTGGTTACCTCCATGACGGCGCGACGCGGTGGTGCTGTCGCTAACAATCGGGTTTTGCGTTGTCCTTT TCTGGGTTTCATTATCTGCTTAATCTCTATCTTTTTTGGGTAAAAACATTATTTCTATTATAGTTCTCTGAAGATTCTAC GTCTCCATTCATATTATTGATTTCTCAATCTAAGAAATCATACACAGGTCCTGGATCTGAATTTAAATTGGTTCAACTAT TTTTATTTTAGCATATTTCAATTGATGGTGCTGTAGAAATCAAATGAACTGGGCGTAAGGAAAGAAAATGGCAGAAATTG AAGAGGTGATAAAGTGGAGGCGAAGAGAAGAAGACAACGAGATGGATGCAGGGCTTTTGTGTCCTTTACTTAATAAATTT TAAATATAATTAAAATCTATTTTACCAGATTACCCGGTTTCCCATTAGCCCAATGACAGGTATTCATAATTTATAATAGG CTAAAAAGCACTTTTGGCCCCTGATGTTTCAAGTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGATGTTTCTACCC CTCATGTTTTCAAACAGTGCATCGTCTACCCCTCATGTTTTCAAACAGTGCATTGTCTACCCATGACGGAGGGGTAGACG GTGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGATAGGGGCAGAATTTGCACAAACTTAAAACATCA GGGGCCAAAAATGCTTTTTAGCCTTTATAATATTACTACATTAGTACATAGGAGTAATATAATATGTTGGACTCAAAATC TTAGGTCCGGAAAAGGTTGTGTGAGTTAAGCAACCTTTTTCCAATACGCGGTTAAGCAAACCGAGATGTCGACGTGATTA ATAATATTTACTTGAACTTGAACGCTGTTCCAATACCGTGTAGCCACAAGCTCTTCCTTCATTGAGTTCAACTATTTCTT TCTTCCAACCTTTGCAGACATAGCAATCTAAACCAAACCAAAACCTCTCTTCTCATCAGTTTCTATCACTTCCAAATTGC ATTTGCAAACAAGATGGAAAACAACAGTAACAACAAGACTCAAAACCCCTCTGCAGAACCTTCTTCCACCTTTTCAAACC CATCACCATCACCATCACCATCACCATCATCATCTGCACCACATCCACCACCCAATAATCCTGCAACTACTGAGAATTGG GGAACTCACATAATGGGCACCCCTGCTGTACCAAGCAGTCATCCAGATAACAAAAAAGCAGCTTTGCAAACTGGCTCTGC TGAACAACCTCAGGTTCAATATTACCAACAACAACAACAACATCCCTATGTGCAACACAGCCCTGCTGAGAAGCCAAGCA ATAGTCCCCTGGAGTCAATCCTCCACATGTTTGATTCATGGAGTAAAAAAGCTGAATCCACCGCCAACAACGTTTGGCAT AATCGTGAGTTCTTTTTTAACACCATGGTTGCTCTGTCTCAGTTCTAGTATACAAGATTATGAATAAGTGCTACTTTTGC TATCTTGGATCAGCTTTTTTCATATCTAGAAGCTAGGTTTGTTGTTCTTCTTCCCAAAATTGATTTTGACTTTAGAATGA ATTATCAAAGATTTCCAGACATGCACTTAATTGTGTTATAGCATGTTTGGAAATCATTATACAATTGATTCTATAGCTAA AATCAATTATCGGGACAAGCTTCCATCAGTAGCTTTTGTGTGATTAAATTAAGGGTACGTTTGGGTAAACAACTTATTCA CAAGTTAATTTGAAAAACTTATTGACATAAATCCAAAATAGGTTATAGGTATGCATAACTTAAGTGCTTATTCATAAGCT ATTGTGAGCAGCTTATGAAAATAAGTTCAAAACTGCTTATTGAAAGCTCATAAATTCTGAGAAGAAATAAGCTCAAATAA GCCCTTCCATACAGGTTTTAATTCTGAGAAGAAATAAGCTGATCAAGACAAAGATGCTATATTGTTGATACAATTTTAGG ACACTTTTAAAATTTTGATATTGGAACCTTGGTTATGTTTGATCATGATTGTAACTTGAAACTATATATCTAAGGGAGGC TAGGCTTTAAAAGAGTATCTAAATATTCCATTTTTGTGTGATGATGTTATTGGTACTGTTATTTTTTGCAGTTAGAACAG GCCCTTCAATGTCTTCAGCTGCACTGGGGAAGATGAATCTGACAGTGAAAGCGATATCAGAGGGAGGGTATGAGTCCCTT TACAAACAAACCTTCACTACCTATCCAAATGAGAAGCTGAAGAAGAGCTTTGCTTGTTACCTTTCAACATCAACAGGGCC TGTTGCTGGAACCCTTTACCTCTCTAACATTCATGCAGCGTTTTGCAGTGATCGCCCCTTGTGCTTCACTGCACCCTCTG GCCAGGAGACTTGGAGCTACTACAAGGTATTGTCATAGATAAAATCTTCATTAATGCTAGTTTGCTTTTTGTACGTAGCT AGAAGGGTAGACAGAGTAGAATTGCGCAAAGGAGTATGTAGTAATACGTGTTTGGATTAACATTGTCATAATTGACTTTG GTAAAATTAATTATGTTAAAAATGAGTTGAAAGTGAAGTGGTTTGTGTTTTGATACCTTTATGAGAAAACTGATTTAGGT AGCTAATGATGTGAATCAGCTTTGAAATCCATAACTTGTTATGAGTGCGTTTGGGTTAGCAACTTAATTAAGCACGTATG GCAATAAGCGCTGATCGCATAAACCCTTATTTATAAGCTAATCTGAACAGATTATGAAAATAAGCTCAAAACAACTTATA AAAGTCCATAAGCTATTTACACAAGCTCTCCCAAAAACTTGCATAAGCGCTTCTGCAGTTCAATTAAGCTCTTCCAAACA GGGCCTATGTCTACTGCACAAGCTAGGTTTTGGAACTAGAATCAATTGTGAAAGGAAACATCCAAGCCTCTAAACATTGA TTTTGATAATGAACAACAAATTCTCATGTCTATAAACAGGCATCCAAACACTGTATAAATGAATTACCTGACTAATGGCT GTTGTAGGTATATACATAAAATGAATGTCTCATTTGGTGTATGAAATGAATTTGTTTCGTGTAACACAGGTGATGGTGCC TTTGGGGAAGATTGGAGCAGTGAACCCTGTGAGCATGAGGGAGAACCCTTCAGAAAAGTATATCCAGATTGTGACAGTAG ATGGGCATGATTTTTGGTTTATGGGTTTTGTTAATTATGACAAAGCAGTTAAGAACCTCTCAGATGGTATCTCACATTTT GTGGTTCCAGGAGTGGCCGCACCATCAACTAGTTCTTGATGGAAGATCTCCCCACATTTTCTATGTAGAGTTTGTGTATG TTTCCTGATTATTACAATGCTGGATATTTTTGTTTAAACGGTAGTAAGATTTTGTCTAGTGATTTTGTGCATTGAATCTA TAGTTGATTATATATGAATGTCATCTAACATGTGCTAGATTTCATTGCTCTTATTGTATTTTTGCATATTTCTGCATCTA ACATATGTTAGATTTCTTCCTCTTAATTAGTATAGTTACGGGATCTGGATGTAGAAATAGAAATAGTCTACTATTTTTCA TAGCAGCTTCCTTCCCAGGTTTTAGCCATGTTTCTGAGCTCAGTCTAATCAGCAATTTGCTGACTGGTTGTCAATTCACT TGACTAAGCTCTTAGTCATACCTTCATAGTTCAAATGACCGTGCAAAGAGTTCATGTTAAGCATACTAGGTGAAGGCTTT CATACTCTATTATTGAGAATCTTCCTTAAATAGACATGATTTTGACCAAGTTCTTCCATTCGCCTTAGTTTTCATCTAGA ATTTCCCTTAATGCATGTAACCTCGAATGTGATTGCTGATAAGGAAAATTGTTATAGAATAAAATGGCTTAGAAGTGGAT CACTAGATTGTCTTGACGATTTGTATTGGATTAGACTCACTGGGGATTGATCTCATGCGTGAGAGTCCATATTCTTTACC ATGCCCTTGACCACCTCAATGTAAGTTTAATACATAAACCCTTTAGAGGCTCAACACTTAAATGTGGGACGATTTGAAAT ACTCACTTTTTCAATCTACCAAATATTTCAAGGAAAAAGGAAATGATTTTTAGGAAAAAGAATCTTCTTGGAATCTTCAT GGATGTAATTATTTTAAATTTGGTGCATTTTGAGCTATGATCCAGATTTAGATTGATAAGATTTAGCACACAAGTGATTT GGTGGACCTAAACTAAGATTTAGGAGTAGGTTAGAGGCTTTACCAACAAAATGACACCCCACAATTTCTCATTTGTGCAC ACTTTTGTGTGCCAAAAATTGTGTGTGCTTAATGTTTATGAATGCTCTAGATGTTTTACAGAAATCTCATACAACCGACC CCAATTGATATTCGTGTAGATGGATCCATCAAATATATATGTTACATTTCATATACTTCTCTTATATGAAACTCATTTCA TATACTTCCCGTTCTCGTTGTCTTTTGCTAGAACATTTGACATTTTTGTTATTCTACTTTGCTTCATACAACTATGCAAA ACAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0631000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAACAACAGTAACAACAAGACTCAAAACCCCTCTGCAGAACCTTCTTCCACCTTTTCAAACCCATCACCATCACC ATCACCATCACCATCATCATCTGCACCACATCCACCACCCAATAATCCTGCAACTACTGAGAATTGGGGAACTCACATAA TGGGCACCCCTGCTGTACCAAGCAGTCATCCAGATAACAAAAAAGCAGCTTTGCAAACTGGCTCTGCTGAACAACCTCAG GTTCAATATTACCAACAACAACAACAACATCCCTATGTGCAACACAGCCCTGCTGAGAAGCCAAGCAATAGTCCCCTGGA GTCAATCCTCCACATGTTTGATTCATGGAGTAAAAAAGCTGAATCCACCGCCAACAACGTTTGGCATAATCTTAGAACAG GCCCTTCAATGTCTTCAGCTGCACTGGGGAAGATGAATCTGACAGTGAAAGCGATATCAGAGGGAGGGTATGAGTCCCTT TACAAACAAACCTTCACTACCTATCCAAATGAGAAGCTGAAGAAGAGCTTTGCTTGTTACCTTTCAACATCAACAGGGCC TGTTGCTGGAACCCTTTACCTCTCTAACATTCATGCAGCGTTTTGCAGTGATCGCCCCTTGTGCTTCACTGCACCCTCTG GCCAGGAGACTTGGAGCTACTACAAGGTGATGGTGCCTTTGGGGAAGATTGGAGCAGTGAACCCTGTGAGCATGAGGGAG AACCCTTCAGAAAAGTATATCCAGATTGTGACAGTAGATGGGCATGATTTTTGGTTTATGGGTTTTGTTAATTATGACAA AGCAGTTAAGAACCTCTCAGATGGTATCTCACATTTTGTGGTTCCAGGAGTGGCCGCACCATCAACTAGTTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0631000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENNSNNKTQNPSAEPSSTFSNPSPSPSPSPSSSAPHPPPNNPATTENWGTHIMGTPAVPSSHPDNKKAALQTGSAEQPQ VQYYQQQQQHPYVQHSPAEKPSNSPLESILHMFDSWSKKAESTANNVWHNLRTGPSMSSAALGKMNLTVKAISEGGYESL YKQTFTTYPNEKLKKSFACYLSTSTGPVAGTLYLSNIHAAFCSDRPLCFTAPSGQETWSYYKVMVPLGKIGAVNPVSMRE NPSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSDGISHFVVPGVAAPSTSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 - –
MobiDBLite
mobidb-lite
1 105 105 - –
PANTHER
PTHR31969
12 287 276 1.3E-146
IPR037848
PANTHER
PTHR31969:SF43
12 287 276 1.3E-146 –
MobiDBLite
mobidb-lite
22 43 22 - –
MobiDBLite
mobidb-lite
66 103 38 - –
Gene3D
G3DSA:2.30.29.30
156 276 121 4.8E-6
IPR011993
SMART
SM00568
159 237 79 3.5E-17
IPR004182
Pfam
PF02893
162 271 110 1.1E-18
IPR004182
CDD
cd13222
170 278 109 3.91089E-65 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0631000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…