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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0632500 |
| Transcript ID | LotjaGi1g1v0632500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G02010.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510; TrEMBL-Plants: tr|I1N805|I1N805_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0632500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118639026..118641636) extracted from Lotus japonicus Gifu genome v1.2.
TTTACACCCAACATTTTCCTTTCCTTAACTACTAGGGTTAAAAAGCCAACAAGTGATTTTTCTCTGACATATGATACACT TCACCTCTCTGCATTTACAAACGCAGGACACTTTGGCGCCAAAACAACCTTAAACCGACACCATTCTCCGTATGAATTAC ATAAAACCATGTACGAGGAAAACCAACGTGGTCCACAACCTTGTCACTACGAATGCAACCAGGTTCTCAAAACCGCACCC TCCTCACATCGACGCTTCGATCATCAAGACTGGCTTCGATCCCACCACTTTCCGTTCCAATTTCCAGGTGAAAGAGTTTC TCCAACGCGGGGACTTGACTGCTGCCCGCAAACTGTTCGACGAAATGCCTCACAAGAACACCTTCTCCGCTAACACCATG ATCACCGGTTACATCAAATCTGGCAATCTATCCGAGGCTAGAAGCTTGTTTGACACCATGGTTGAACGCAATGCTGTTAC GTGGACAGTGCTGATCGGCGGCTATGCTCAGAACAATCGGTTCCGCGAAGCTTTTGGTCTTTTTGCTGAGATGGGTAGGC ATGGAATCGGTCCGGATCATGTCACCTTGGTCACTCTCTTATCTGGATTTACTGAGTTTGATTCTGTTAATGAAGTTACC CAGGTTCATTCCCATGTCATCAAATTGGGGTATGATTCCACCCTCATGGTTTGCAACTCATTGGTTGATTCCTACTGTAA AACCCGTAGCCTTGGTTTAGCTTGTCGCCTCTTCAACGAACTACCTGATAAAGATTCTGTCACTTTTAATGCATTGTTGA CTGGATACTCCAAAGAGGGGTTCAATCATGAAGCCATAAACCTGTTTTTCAAGATGCAGGATTTGGGGTTTAGGCCAACT GAGTTTACTTTTGCTGCAGTTTTGACTGCAGGCAAGCAGTTGGATGATATAGAATTTGGGCAGCAAATTCATGGTCTTGT AATGAAGACTAATTTTGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGAATTCTACTCCAAACACGACCGTGTTGCTG AAGCAAGGAAACTTTTTTATGAGATGCCAGAGTTGGATGGTATTTCTTACAATGTGCTCATCACATGTTCTGCGTGGAGT GGAAGAATTGAAGAATCTCTTGAACTTTTCAGGGAATTGCAGTTTACTAGATTCGACCGGAGGCAATTTCCGTTTGCTAC ATTGTTGAGCATAGCTGCAAATGCTTTCAACCTGGAAATGGGCAGGCAAATTCATTCCCAGACTGTTGTAACTGCTGCCA TTTCAGAAATCCTGGTGGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACCAATTTGGGGAAGCAAATAAGATTTTT GCGAATCTGGCTCAACAAAGTTCAGTTCCATGGACAGCACTGATCTCGGCCTATGTTCAGAAGGGACTGTATGAAGATGG CCTAAAGCTATTCATTGGGATGCAAAGAGCCAAAATAGGTGCCGACGCAGCAACTTATGCCAGCATTGGAAGAGCTTGTT CAAATTTAGCCTCACTGACACTGGGAAAACAGTTACATTCACATATAACTAGATCAGGATACATTTCAAATGTATTTTCT GGCAGTGCACTACTTGACATGTACGCAAAATGTGGATCCATAAAAGACGCGCTTCAGATGTTTCAAGAGATGCCTGTGAG GAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCGCAAAACGGAGATGGTGACCGTACTCTTCAATCATTTGAAC AAATGGTTCATTCAGGTCTGCAACCAGATTCTGTTAGCTTCCTTAACGTTCTATGTGCCTGCAGCCACTGTGGTCTAGTT GAAGAAGGACTGCAGTACTTTAACTCCATGACTCCAATGTATAAACTTGTTCCCAAAAGAGAGCATTATGCATCCGTTGT TGACATGCTATGTCGTGGTGGGAGATTCGACGAAGCTGAGAAATTGATGGCTAAGATGCCTTTTGAACCTGATGAAATAA TGTGGTCATCAATTCTGAACTCATGCAGAATCCATAAAAATCAGGAGTTGGCAAAGAAAGCAGCAGAGCATCTATTCAAC ATGAAGGCCCTTAGAGATGCGGCCGCATATGTTAGCATGTCCAATATCTATGCCGCAGCCGGTGAATGGGACAATGTTGG GAAAGTGAAGAAGGCCATGAGGGACAGAGGAGTTAGAAAGCTCCCAGCTTATAGTTGGGTTGAAATCAAACACAAGAATC ATGTATTCTCAGCCAATGACAAGTCTCACCCGCAGATGGGAGAGATAATGAAGAAGCTCGATGAGTTGGAAGAGGAAATG GAGAAACAAGGGTATAAACCTGACTCAAGTTGTGCTCTTCACAATGTGGATGAGGAGGTCAAGGTGGAGTCTCTGAAATA TCACAGTGAGCGCATTGCCATTGCATTTGCACTGATTAGCACCCCAAAAGGGTCACCTATATTGGTCATGAAGAACCTAC GAGCTTGTACTGATTGCCACGCTGCCATCAAGGTGATCTCCAAGGTTGTTGATAGGGAAATTACTGTCAGGGATTCAAAT AGGTTCCACCATTTCAAAGATGGATTTTGCTCCTGTAATGACTACTGGTAG
CDS sequence (LotjaGi1g1v0632500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTACATAAAACCATGTACGAGGAAAACCAACGTGGTCCACAACCTTGTCACTACGAATGCAACCAGGTTCTCAAA ACCGCACCCTCCTCACATCGACGCTTCGATCATCAAGACTGGCTTCGATCCCACCACTTTCCGTTCCAATTTCCAGGTGA AAGAGTTTCTCCAACGCGGGGACTTGACTGCTGCCCGCAAACTGTTCGACGAAATGCCTCACAAGAACACCTTCTCCGCT AACACCATGATCACCGGTTACATCAAATCTGGCAATCTATCCGAGGCTAGAAGCTTGTTTGACACCATGGTTGAACGCAA TGCTGTTACGTGGACAGTGCTGATCGGCGGCTATGCTCAGAACAATCGGTTCCGCGAAGCTTTTGGTCTTTTTGCTGAGA TGGGTAGGCATGGAATCGGTCCGGATCATGTCACCTTGGTCACTCTCTTATCTGGATTTACTGAGTTTGATTCTGTTAAT GAAGTTACCCAGGTTCATTCCCATGTCATCAAATTGGGGTATGATTCCACCCTCATGGTTTGCAACTCATTGGTTGATTC CTACTGTAAAACCCGTAGCCTTGGTTTAGCTTGTCGCCTCTTCAACGAACTACCTGATAAAGATTCTGTCACTTTTAATG CATTGTTGACTGGATACTCCAAAGAGGGGTTCAATCATGAAGCCATAAACCTGTTTTTCAAGATGCAGGATTTGGGGTTT AGGCCAACTGAGTTTACTTTTGCTGCAGTTTTGACTGCAGGCAAGCAGTTGGATGATATAGAATTTGGGCAGCAAATTCA TGGTCTTGTAATGAAGACTAATTTTGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGAATTCTACTCCAAACACGACC GTGTTGCTGAAGCAAGGAAACTTTTTTATGAGATGCCAGAGTTGGATGGTATTTCTTACAATGTGCTCATCACATGTTCT GCGTGGAGTGGAAGAATTGAAGAATCTCTTGAACTTTTCAGGGAATTGCAGTTTACTAGATTCGACCGGAGGCAATTTCC GTTTGCTACATTGTTGAGCATAGCTGCAAATGCTTTCAACCTGGAAATGGGCAGGCAAATTCATTCCCAGACTGTTGTAA CTGCTGCCATTTCAGAAATCCTGGTGGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACCAATTTGGGGAAGCAAAT AAGATTTTTGCGAATCTGGCTCAACAAAGTTCAGTTCCATGGACAGCACTGATCTCGGCCTATGTTCAGAAGGGACTGTA TGAAGATGGCCTAAAGCTATTCATTGGGATGCAAAGAGCCAAAATAGGTGCCGACGCAGCAACTTATGCCAGCATTGGAA GAGCTTGTTCAAATTTAGCCTCACTGACACTGGGAAAACAGTTACATTCACATATAACTAGATCAGGATACATTTCAAAT GTATTTTCTGGCAGTGCACTACTTGACATGTACGCAAAATGTGGATCCATAAAAGACGCGCTTCAGATGTTTCAAGAGAT GCCTGTGAGGAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCGCAAAACGGAGATGGTGACCGTACTCTTCAAT CATTTGAACAAATGGTTCATTCAGGTCTGCAACCAGATTCTGTTAGCTTCCTTAACGTTCTATGTGCCTGCAGCCACTGT GGTCTAGTTGAAGAAGGACTGCAGTACTTTAACTCCATGACTCCAATGTATAAACTTGTTCCCAAAAGAGAGCATTATGC ATCCGTTGTTGACATGCTATGTCGTGGTGGGAGATTCGACGAAGCTGAGAAATTGATGGCTAAGATGCCTTTTGAACCTG ATGAAATAATGTGGTCATCAATTCTGAACTCATGCAGAATCCATAAAAATCAGGAGTTGGCAAAGAAAGCAGCAGAGCAT CTATTCAACATGAAGGCCCTTAGAGATGCGGCCGCATATGTTAGCATGTCCAATATCTATGCCGCAGCCGGTGAATGGGA CAATGTTGGGAAAGTGAAGAAGGCCATGAGGGACAGAGGAGTTAGAAAGCTCCCAGCTTATAGTTGGGTTGAAATCAAAC ACAAGAATCATGTATTCTCAGCCAATGACAAGTCTCACCCGCAGATGGGAGAGATAATGAAGAAGCTCGATGAGTTGGAA GAGGAAATGGAGAAACAAGGGTATAAACCTGACTCAAGTTGTGCTCTTCACAATGTGGATGAGGAGGTCAAGGTGGAGTC TCTGAAATATCACAGTGAGCGCATTGCCATTGCATTTGCACTGATTAGCACCCCAAAAGGGTCACCTATATTGGTCATGA AGAACCTACGAGCTTGTACTGATTGCCACGCTGCCATCAAGGTGATCTCCAAGGTTGTTGATAGGGAAATTACTGTCAGG GATTCAAATAGGTTCCACCATTTCAAAGATGGATTTTGCTCCTGTAATGACTACTGGTAG
Protein sequence (LotjaGi1g1v0632500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYIKPCTRKTNVVHNLVTTNATRFSKPHPPHIDASIIKTGFDPTTFRSNFQVKEFLQRGDLTAARKLFDEMPHKNTFSA NTMITGYIKSGNLSEARSLFDTMVERNAVTWTVLIGGYAQNNRFREAFGLFAEMGRHGIGPDHVTLVTLLSGFTEFDSVN EVTQVHSHVIKLGYDSTLMVCNSLVDSYCKTRSLGLACRLFNELPDKDSVTFNALLTGYSKEGFNHEAINLFFKMQDLGF RPTEFTFAAVLTAGKQLDDIEFGQQIHGLVMKTNFVWNVFVANALLEFYSKHDRVAEARKLFYEMPELDGISYNVLITCS AWSGRIEESLELFRELQFTRFDRRQFPFATLLSIAANAFNLEMGRQIHSQTVVTAAISEILVGNSLVDMYAKCDQFGEAN KIFANLAQQSSVPWTALISAYVQKGLYEDGLKLFIGMQRAKIGADAATYASIGRACSNLASLTLGKQLHSHITRSGYISN VFSGSALLDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDRTLQSFEQMVHSGLQPDSVSFLNVLCACSHC GLVEEGLQYFNSMTPMYKLVPKREHYASVVDMLCRGGRFDEAEKLMAKMPFEPDEIMWSSILNSCRIHKNQELAKKAAEH LFNMKALRDAAAYVSMSNIYAAAGEWDNVGKVKKAMRDRGVRKLPAYSWVEIKHKNHVFSANDKSHPQMGEIMKKLDELE EEMEKQGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACTDCHAAIKVISKVVDREITVR DSNRFHHFKDGFCSCNDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 157 | 143 | 7.4E-30 | ||
| ProSiteProfiles | 45 | 75 | 31 | 5.777 | ||
| PANTHER | 74 | 162 | 89 | 1.8E-122 | – | |
| ProSiteProfiles | 76 | 106 | 31 | 10.15 | ||
| TIGRFAM | 80 | 107 | 28 | 1.2E-5 | ||
| Pfam | 107 | 153 | 47 | 5.1E-12 | ||
| ProSiteProfiles | 107 | 141 | 35 | 12.54 | ||
| TIGRFAM | 109 | 142 | 34 | 1.1E-7 | ||
| ProSiteProfiles | 142 | 176 | 35 | 6.654 | ||
| Gene3D | 158 | 256 | 99 | 1.9E-19 | ||
| PANTHER | 163 | 254 | 92 | 1.8E-122 | – | |
| ProSiteProfiles | 177 | 207 | 31 | 7.848 | ||
| TIGRFAM | 180 | 206 | 27 | 8.8E-4 | ||
| Pfam | 207 | 252 | 46 | 1.2E-9 | ||
| ProSiteProfiles | 208 | 242 | 35 | 12.299 | ||
| TIGRFAM | 210 | 244 | 35 | 6.0E-5 | ||
| Gene3D | 257 | 379 | 123 | 4.1E-15 | ||
| PANTHER | 262 | 353 | 92 | 1.8E-122 | – | |
| ProSiteProfiles | 278 | 308 | 31 | 8.254 | ||
| Pfam | 283 | 307 | 25 | 0.015 | ||
| ProSiteProfiles | 309 | 343 | 35 | 8.835 | ||
| Pfam | 311 | 336 | 26 | 0.0015 | ||
| PANTHER | 348 | 465 | 118 | 1.8E-122 | – | |
| ProSiteProfiles | 379 | 409 | 31 | 6.106 | ||
| Gene3D | 380 | 458 | 79 | 2.6E-13 | ||
| ProSiteProfiles | 410 | 444 | 35 | 9.251 | ||
| Pfam | 413 | 441 | 29 | 1.9E-5 | ||
| TIGRFAM | 414 | 445 | 32 | 2.7E-4 | ||
| ProSiteProfiles | 445 | 479 | 35 | 6.401 | ||
| Gene3D | 459 | 577 | 119 | 2.4E-29 | ||
| PANTHER | 462 | 676 | 215 | 1.8E-122 | – | |
| ProSiteProfiles | 480 | 510 | 31 | 8.714 | ||
| Pfam | 485 | 510 | 26 | 0.0016 | ||
| TIGRFAM | 486 | 510 | 25 | 8.8E-4 | ||
| Pfam | 511 | 557 | 47 | 2.3E-9 | ||
| ProSiteProfiles | 511 | 545 | 35 | 12.485 | ||
| TIGRFAM | 513 | 547 | 35 | 3.8E-6 | ||
| ProSiteProfiles | 546 | 576 | 31 | 7.059 | ||
| Gene3D | 578 | 755 | 178 | 1.9E-15 | ||
| ProSiteProfiles | 582 | 612 | 31 | 8.298 | ||
| TIGRFAM | 586 | 609 | 24 | 7.0E-4 | ||
| Pfam | 586 | 609 | 24 | 0.013 | ||
| ProSiteProfiles | 649 | 683 | 35 | 8.473 | ||
| Pfam | 687 | 809 | 123 | 7.3E-37 | ||
| ProSiteProfiles | 695 | 730 | 36 | 5.514 | ||
| Coils | 709 | 729 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0632500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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