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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0634700 |
| Transcript ID | LotjaGi1g1v0634700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G62670.1 rna processing factor 2; Swiss-Prot: sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial; TrEMBL-Plants: tr|A0A1J7GLU8|A0A1J7GLU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0634700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118924611..118926940) extracted from Lotus japonicus Gifu genome v1.2.
TAAAACGTGACATGGGCCAGCCCAAAGCTAGGCTCAAAAAATTAGACGAGGAAAAGATGGGCCAAAAAAAGGCGTAGTAG ATTTGAGGATCTGTTAACAAAATTACCAACCCTCAACAAAACCCTATATTTCTTAATCTCTGTTAGCGCATCCCATCCGC ACTGCATCTGCAATCGAGTCATGTAAGTGATCCAAATCTCATCTCTTCTATGTTTGTTTCACGCTCAATTAGTGTATTGT GCCTTCGTGACTAGGCTTTCCTTTCTCATATTTGCTTGTAATTTGGCTTCCATTGTATAGTTTTTGTCTTTCATTGTATT TCTCCATCTCATCTATTTGTTATTTGTTGAGAGCCGGCCCTAAATGAAGCCTAAAGTAAAATGTAAAGTTAGACATTTTT TTTACTTAGTATTAATCCTTAGGGTCTTTTTTTCAGGCCTAAAGCCCTTGTTTGCTGGGTGTGGTGACTTTACCCTTAGG CCGGCCTGTATTTATATTTGTTGTCACTTTGTTTATCTCTGCTAAAATGCATGCAGAAACCAAATCCATTCTCATATTTA AGCTTGTATTGTAATCTGTTTACATATTTCTTTTGTTATTACCTGTGTTTCAATTTACATTTTCAGTTTCTTAATGAAGA AAATATAAATGAATTTTAATTCGTATCTAATCTTCTCTGCTTTCTCTGTATTGAAAGCTGGTCTGAGAGATTTCATGGAA CTGCATTTAGTGAAGCACTGCCTAAAAAGCATGTTATATGTAACAAGGCATCATGCAATCATAAAACTTCCTCGCGTCCC TATGCCATCGCCTGCTTTCCGTGTTTTTCTGCCACAACAGCATCTTCATTCCAACACTCAAAATGCCTACAAATTTGATA GTATTCATGATGCTGTGGCTTTATTTCATCGCATGGTCGATATGAAGCATCCCCGCCCATCCGTTGTTGAACTCACCAAT ATCTTAGCAACAGTTGTAAAGATGGATGACTATGCCACACCTATTTCTCTTTACACTCATATGGAATCTAAGGGCATCTT GCCTTCTACACTTACTTTGAACATCTTGATGAATTGTTACTCTCATTTGGGTCACATGGCTTCTGCTTCCTCTGTATTGG GTAAGTTTTTTAAGTTGGGCTATGAACCAGATATTGTCTCATTGATTTCACTATTGAAGGGGTTCTGCATCAATGGGAAG GTGTTGGATGCACATGAAATTGCACGAGGATTTCACTGTGATCAAGTTATGTATGAAACCTTAACCACTGATCTTTGTAA GTCCGGTGAAACCCTACTTGTCATTCAAATGCTTCATGAAATAGATAAGCCCAACCTTTTAATCTGCAATAGAATCCTTG ATTATTTGTTCAAACATAGACGCCTAATCAAGGTACTGGATTTGTTTTCTGATATGAGAAATCACATGATCTTCCCAGAT GTTTGTACCTTCAACATAATATTGAATTTTTTTTGTCTAAAAAGTAAAGTGGATATGGCCAGAGAGTTATTTGATGGGAT GATTGAATGTGGTTTTACACCTGATGTTTGGAGCTATCTCATCATGATTAAAGGCTACTGCAAGGTTAAAAGAATCGTTG AAGCTTTGCATCTATGGCAAGATATGCTTTTGAAGAAGAATTTACCTCGAAACACGCTCACCTACAATATCATGTTAGAT TCTTTATGCAAAACACAACATCTTAATCTGGCAAGAAAATTATTTGATATCATGATTGAAAATGATGTTTCACCTGATGT TTGGAGCTATCTCATCCTGATTAAAGGCTACAGCGAGATTGAAAGATTCGATGAAGCTGAGGATCTATGGGAAGATATGC TTTTTGAGTTGAATTTAGCTCCAAAGACGGACGCCTACGATTTCACATCAGATTGTTTATGGAAATTGCAACAACTTTGA TGTGGCAAGAAACTTATTTGAAATGATGATTTGGGGGGGGGGGGGGGAGGGGGGCACCTGATGTTTGGTGTTACCACATC ATGATTAACTTAAGTGTTTTTTCCAGAATGAAAGAGTAGATGAAGCTATGAGTCTTTATGTAGAGATGTGTTTCAAAAAA ATAATTCCAAATAGAGGAACCTACAAGCATGTTGTCTGTTTGCCTTGCAAATGAATTTCCCTTTATGATGCTTCCAAAGT TGCAAACTAATAATCTAGGTTGTTATGTAATGGTAGAGAAAGACACGTTGCAAAAGGATTTGCCTTTATAAACCCCTCCA AAGTTGCAAACTGTCAATTTAGATTTGATATAATGATAGACTGGGATATGGTTCATATACTTTTTGATGCCATTTAGGCC TGGATTACCG
CDS sequence (LotjaGi1g1v0634700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTGCATTTAGTGAAGCACTGCCTAAAAAGCATGTTATATGTAACAAGGCATCATGCAATCATAAAACTTCCTCG CGTCCCTATGCCATCGCCTGCTTTCCGTGTTTTTCTGCCACAACAGCATCTTCATTCCAACACTCAAAATGCCTACAAAT TTGATAGTATTCATGATGCTGTGGCTTTATTTCATCGCATGGTCGATATGAAGCATCCCCGCCCATCCGTTGTTGAACTC ACCAATATCTTAGCAACAGTTGTAAAGATGGATGACTATGCCACACCTATTTCTCTTTACACTCATATGGAATCTAAGGG CATCTTGCCTTCTACACTTACTTTGAACATCTTGATGAATTGTTACTCTCATTTGGGTCACATGGCTTCTGCTTCCTCTG TATTGGGTAAGTTTTTTAAGTTGGGCTATGAACCAGATATTGTCTCATTGATTTCACTATTGAAGGGGTTCTGCATCAAT GGGAAGGTGTTGGATGCACATGAAATTGCACGAGGATTTCACTGTGATCAAGTTATGTATGAAACCTTAACCACTGATCT TTGTAAGTCCGGTGAAACCCTACTTGTCATTCAAATGCTTCATGAAATAGATAAGCCCAACCTTTTAATCTGCAATAGAA TCCTTGATTATTTGTTCAAACATAGACGCCTAATCAAGGTACTGGATTTGTTTTCTGATATGAGAAATCACATGATCTTC CCAGATGTTTGTACCTTCAACATAATATTGAATTTTTTTTGTCTAAAAAGTAAAGTGGATATGGCCAGAGAGTTATTTGA TGGGATGATTGAATGTGGTTTTACACCTGATGTTTGGAGCTATCTCATCATGATTAAAGGCTACTGCAAGGTTAAAAGAA TCGTTGAAGCTTTGCATCTATGGCAAGATATGCTTTTGAAGAAGAATTTACCTCGAAACACGCTCACCTACAATATCATG TTAGATTCTTTATGCAAAACACAACATCTTAATCTGGCAAGAAAATTATTTGATATCATGATTGAAAATGATGTTTCACC TGATGTTTGGAGCTATCTCATCCTGATTAAAGGCTACAGCGAGATTGAAAGATTCGATGAAGCTGAGGATCTATGGGAAG ATATGCTTTTTGAGTTGAATTTAGCTCCAAAGACGGACGCCTACGATTTCACATCAGATTGTTTATGGAAATTGCAACAA CTTTGA
Protein sequence (LotjaGi1g1v0634700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELHLVKHCLKSMLYVTRHHAIIKLPRVPMPSPAFRVFLPQQHLHSNTQNAYKFDSIHDAVALFHRMVDMKHPRPSVVEL TNILATVVKMDDYATPISLYTHMESKGILPSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCIN GKVLDAHEIARGFHCDQVMYETLTTDLCKSGETLLVIQMLHEIDKPNLLICNRILDYLFKHRRLIKVLDLFSDMRNHMIF PDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWSYLIMIKGYCKVKRIVEALHLWQDMLLKKNLPRNTLTYNIM LDSLCKTQHLNLARKLFDIMIENDVSPDVWSYLILIKGYSEIERFDEAEDLWEDMLFELNLAPKTDAYDFTSDCLWKLQQ L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 39 | 170 | 132 | 4.5E-18 | ||
| PANTHER | 56 | 202 | 147 | 2.0E-55 | – | |
| ProSiteProfiles | 76 | 110 | 35 | 6.522 | ||
| ProSiteProfiles | 111 | 145 | 35 | 8.824 | ||
| TIGRFAM | 114 | 147 | 34 | 0.0025 | ||
| Pfam | 114 | 142 | 29 | 0.33 | ||
| PANTHER | 170 | 326 | 157 | 2.0E-55 | – | |
| Gene3D | 171 | 292 | 122 | 3.3E-25 | ||
| ProSiteProfiles | 176 | 206 | 31 | 5.744 | ||
| ProSiteProfiles | 207 | 241 | 35 | 7.859 | ||
| Pfam | 211 | 236 | 26 | 1.2 | ||
| Pfam | 241 | 290 | 50 | 1.9E-14 | ||
| ProSiteProfiles | 242 | 276 | 35 | 11.071 | ||
| TIGRFAM | 244 | 278 | 35 | 1.4E-7 | ||
| ProSiteProfiles | 277 | 311 | 35 | 10.446 | ||
| TIGRFAM | 280 | 308 | 29 | 1.3E-6 | ||
| Gene3D | 293 | 401 | 109 | 2.3E-21 | ||
| PANTHER | 310 | 395 | 86 | 2.0E-55 | – | |
| Pfam | 313 | 360 | 48 | 2.4E-13 | ||
| ProSiteProfiles | 313 | 347 | 35 | 11.641 | ||
| TIGRFAM | 316 | 349 | 34 | 2.0E-8 | ||
| ProSiteProfiles | 348 | 383 | 36 | 9.514 | ||
| TIGRFAM | 351 | 376 | 26 | 1.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0634700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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