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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0635100 |
Transcript ID | LotjaGi1g1v0635100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphoribosyl-AMP cyclohydrolase; TAIR: AT1G31860.1 histidine biosynthesis bifunctional protein (HISIE); Swiss-Prot: sp|O82768|HIS2_ARATH Histidine biosynthesis bifunctional protein hisIE, chloroplastic; TrEMBL-Plants: tr|A0A072U2X9|A0A072U2X9_MEDTR Histidine biosynthesis hisIE protein; Found in the gene: LotjaGi1g1v0635100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118995835..119001284) extracted from Lotus japonicus Gifu genome v1.2.
CACTACTCTAAAATTAATATTTTTCCTTAAAAAATCCTTTTATTATTTGCGCATCCAAACACATCATAACCATCCAAGGT TGTGTGTCTCATTCTCCCTGTTGCGCTTTTGGATGTTGGGGCTCTTCAGATCGGCTCTACTCCACTGAAATTCATCCGCC GCGCCGTCAGGAGGTCGTCCGCAGTCGCCGCCGGTGTCAGCAGCCAGCCTTCCTCCACCTCCCACCGGTATGATTTTGGT CTTCTCTTGCCCCTGTTTGGTATTTTGTTTCTTTGGCCTTTGCTTCTCTGCTTAGTAAACTGTGGTCTGTTTACATTGTC TAGGCATAAAGGATTCTCATAGTTAAATGCAAATGAAACAACAAATGGTGCATTCTTATAGTTAACTGGGTAGTATTTTC CTCTACCTATAGCACATTCAGAAATGGGTTATCTATGAATTAAATTTAAGCTTGGAAAACAAGTGAATATATATACACAC TAGGGTTAGGGTACCCATACCTGGAAAACATGTGAATATATATAATAGGTTGTAAAATATTTGGATGTTACAGTTTTTGT TTTTTCTGCCTAAGATTGGTTACAGTTTAGACAGCATTTTGATTTAATATTGTATATAACAGTTTCTGTAGGAGAGGAAG GACTCTGCAATTGAAAGAAATTTATGGTCTTTTGACATGTTTCCCCTGAATTTTAAATTGAATTCATGGTTTTATTGCCT TCACTTTGCTCATAGTTATTCTTATTATGTCCCTTAGATCAAAGTGCTTTCTGCATCAAAATCTTTAGAGTTTAGACTAG ACATTTTTCTGCATTTATTCCTAATATTTAAATTTTAAAAAATTATTTGTATCTTAAAGGTAGACAGACTGCATAGGTTA ATTTTTTTAATTTAAGGGTTTTTTTTTGTCTTTGGCCCATGTGTGTTAGGGTTAACTGGGTTGAGGGTTCGCCCTTATTG GAGGTTCTATGAATTGGTTCCTAATAAAACATTGTTTGTTTCCTTACAATTGCACAGGCAAGTGGTTGTCAGAGGTGGTG TTTCAATTCAATGGCTGTTTCCTACGTTCACATGCTTCAATCTGCCAGAGGTTTCCACAAATGCAACCTCTCATTTTCCA GTCATGAGTATCCTAGACGCAGTTACAAGACCCACCACTTAGTTTTCGCTTCTATGCACACATCAAACCCCAAGGTACTT GAATGTGAACTAACTATTGTATTTTCTATATTCTGTGTATGAATGGTCTTTGAGCCCTTTGGTTTGCTTAGATGCACTGT AATCTGGGTTGTGTGGAGAGTTTTGCACTGCTCTATGCTGGTTCTACTGTGTTTTCTTGCTGATGCTAGCTGCCCTCTAT TTCCCCTCTGTTGCCTAGTGGTTTACAGGAAGCCAGGCTTGTGTTTTGGTTTATTGGTAGCTGATTGCAATGGGTTTTGC TGCTGCGTGTTGGTGTTGAGCTTACAATCATGGTTGCTGGTCTGGAATGCTATGATTACTCTTTCTAGTTGCTGAAATTG TGACTCTTTCTATCTAGTTTTTCTCTAGTCTTTTAGTTCTTTTATGTTTGCTTATTTTTTTCTTTCCTTGTATTAAGGGT TGGGGCACCCTTCGTGCTCCCTTAATGCAATTATTTGGCTGATAAAAAAAAAAAACTATTGTGTTTTCTATGATTTGATT GCTTTGCTTAGCATGTTGTTTGGGAAATTGGCAATGGGAGTTCTTGAGAAAATAGGGGGAAAAGTGGGTTGCCTTTGTTT TATTTTATTTTTCATTATCAGATGGTATGTTTTTAATGGGCATTACAAAATACTAGCTTGTTTCAATTTTGTTTACTGAT CTACAATTTACATAAGGCTCTGTTTGGGAGTTTATCAAGATTTTGTATTGGCCAGTTAATGGTGCATTCTTCTTATTAGG GTGGATCTTCGTCTGGATGTTAAAAGATGGTTCTCATGATGATTTTTGTGATTGCGTCCTTGAAATAGGTAGTACGGTGA ATGCATTGTTTTTTTGTTTTAGAATCGGAAGCCAGATTCATGCATAGATTTGTCTTTGTATGAAACTACCGCTCACCTGG TTATTTATGTTACTGAGAGATCATTGTCATTCCGCTCACTTGGTTATTCATGTCACTGAGAGATCGTTGTCATTATATAA ATAAGGCGTTAGAGACCACAAAGCATGCTATCTAAAAGGAATTACCACTTTGTTCACTATCTGTTACAGATGGTCATTGT TTAGGATTTCATATTATTCATGATGTAGTGGTAGTGGACTTGCAATTTGATTATGCATTATGTTTAATTGACAATTAGAT TGTGTAAAAGTATCTCGGTCAATCATCTACTCTGCTTTTGATTTTATAAAATAATTGGTTACATTAGCATCTATCAAAGT AGTTATGCTTATTCCTAAATGGAGGTGGTCACATGATCGAGAATCAACTTGAAATTTCTGCTCCTTCATCACGAGGCTTA AAAACTGAGGTAGACCAGAACTTACTGAAAGTTCTTTCTGGTCTTTGAACAAATCATTTTTCTTTAGCTACAATATTAAT GCCTGCTTTGCTATCTTCAAACCTTGGGTGTTGTTTTAGTTGTTTGATTTTCTATCCTAAAGTTGCACTTTACATTAAAT TGCGAAGCTGGTCATGTAAGTAATATTTATATTTTTGGGTTGAAATTGGGGCACCTCATGTAAGTTTTATTTATATTTCT GGGTTGAAATTACGTAATAATTTAGTTCCATGGGATTAAGTTCGGAAATTCTTTTGCACTTTTATGGTGATTGTAAATGT GTTGTTGATACTAAAAGGAAAGCTCATCCTTTGTGTTGCTTATGAAATTTCTTGGCAATTGTTGTTTTCATTTCTTCCTT ATTTTAATGTTATTTCTGATTTTTTATTTCACTTTAAAAAGTTCAAACTTTTGTCAGGTAGACTCATTTCTGGACAGTTT AAAATGGGATGATAAAGGTTTGGCTGTGGCAATAGCTCAGAATGTTGACACAGGAGCCATCCTAATGCAAGGCTTTGCAA ATAGAGAAGCAGTGGTTACAACCATATCTTCTCGCAAGGCCACATTCTATAGCCGGTCACGATCAGCATTGTGGACGAAA GGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGATTGTGATCGCGATTCCGTAAGCTCTTGCCTTCT CTCCCGATGGAATTATAAGTGTTTTCCTTTTCTTCTTTGCATTAGTATCATATGGAACCTTGATTACTTTTTCCCCCTGG TTTCTCAGATAATATACCTTGGAAAACCTGATGGGCCTACCTGCCACACAGGAGCAGAAACATGCTACTATACATCAGTC TTTGACTTGTTAAAAGAACAAGAGGTTAGTTTAAATTGATTCAAACAAGCATGTTATTGGCTTGTTTTGTTTCAAATACA GTCTGCAATATTCAAATTTATTTGGTTTTTTTTCTACAGGCTGATGGAAATAAATTGGCATTAACTTCTTTGTATGACTT AGAGTCTACAATATCCCAGCGCAAAGCAGAGTTAGCAGAAGTAGAAAATGGAAAGCCTTCTTGGACAAAGCGATTATTGC TTAATGATGAGTTGTTGTGCTCTAAAATCAGGTTGCGTATATATTGGCATGTTCTTCTGTTCAGTTTGAATATAAGTAAC AAACCTTTTCCCCCTTTTCTTCCCCCGAAAAATCCATGTTGTCCATGCTTCAGTTATTGCTAAGCCTTTTAGCTGATACA ATTGCCTCTGTGCTGAACCTTTTGTTTAAAATACTAATTTTCTTATGATTCACTTTGCTTGAAGAAAACATTTGGAGTAA AAGCTTGTTATCTCTATGACTTCAGATTGTAACTTTATCTTTCTACTTGCAGAGAAGAGGCAAATGAGTTGTGTCAAACA CTAGAGAGTAATGAGGACAAGTCGCGTACTGCTTCAGAGATGGCTGATGTACTGTACCATGCCATGGTTTTGATGGCACG GAAAGATGTCAAAATGGAAGATGTTTTGCAGGTTCTTCGGCAAAGATTTTCCCAATCTGGTATTGAGGAAAAGAGAAGTC GTGCGTCCCAGAAATCAGTGGACGGGTGAGTGTTTTCCCAATATATATAGCTTGTGTTCTTACCTATGTAACTCTGGTTG AGTTAGGGTAACTTTTGTTCAATAGAGTTCAGTTGAGAATGTCAAGAACACCATGTAAGATGTAACTGTCATTCTTCATT TTCCAGAGTGATGTTTTACTCATTTCCAGAGGTTTTTAGTTAATTGTATTTACAATTTTACATGCAAGGTTGCATGCTTA AATAGCGCAAACTGTGAGACTATGATATGCTTATTAAGTGTATGTTTGTTTTGGCGTTAGAGCTAACGCAAACGTGATTT CACGTATCTCAAGGTATTAACGGAGAAGTTAGAATTTGTCACGTTAAGTTTAACGTGGATCGGAGAATTAAGATTTTGTA CTGTAACTCCGTTACCTATTTTGTTAGTGCTGCCACTTACATTGTGATCTCGGCGCACGTTCCTCCTTACCACTTTGTAT CTTCCCTACCGATGACTCCATTTCCAGTAATAGCTCCGTTGATCCCATTTCGTCTATGCACTCTACACTGCAAGAAGTGG GACTTGCCTTGGAAGCCTTTAGTAGATTACTTGCTGCCCCCATTGCCCACAATCACCGGATTCAATATCTATAAATTTAC ATGTTCATTAGTTGTTGATGCAATTGAGTGTTTAATGCAAATATCACATCTTAAAAATATTATGGGTATCACAGAGTACA CTATGGATCGAAGAATGATGAATAATTAATTAAGGATATTTTTGTAAGAAAATAACTAAAGTTGGAGCAGTTTTTTTTAA GAATCACTTAAGAAGGTGTTCTAAAGTTGGAGCAGTTTTAAGCTTGTGCTTATAAATGGACCCTAAAATTTAAGTTAATT CTTATGAAAAGGTCAAAATTATACTGTCAAGTTGGTTTAGGTAGGAGACACTATTCTGCAATTATTTGCCCTGTGTATTG AGCCAATGCATGTCAATCTGCAAAATAGCACAACCATTGTTGCTAAGCATGCCAACTGATGTTTGTATCTGTATTAGGAA GAGGTCACGATAGAAGAGATTTTGAAGACACAATGCTGGTGACATCGGATGAGGAGAAAGTGGAGAGTAGTGGGTACTTG TGCAGTTTGCATTTCGTGGCACACACCAAGAGATTCTCGATCTCCGAAAGCAAACACTTGTACTGTTAAAATTGAACTTA ACATGAGCCTCCGATCGAGGTGCTTGTTATATGTCAAAGAATAATGGAGCTGGAACTAGTTTGGTGAAGAGGCCAAGTAA AGAAAAAGTTAAAAGTTTAAATCTCAACTTTTTAATATTTACACACTGATAAATATTTTTAAACACATTAAATGTGTGTT TGGTTCTCAG
CDS sequence (LotjaGi1g1v0635100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTTCCTACGTTCACATGCTTCAATCTGCCAGAGGTTTCCACAAATGCAACCTCTCATTTTCCAGTCATGAGTA TCCTAGACGCAGTTACAAGACCCACCACTTAGTTTTCGCTTCTATGCACACATCAAACCCCAAGGTAGACTCATTTCTGG ACAGTTTAAAATGGGATGATAAAGGTTTGGCTGTGGCAATAGCTCAGAATGTTGACACAGGAGCCATCCTAATGCAAGGC TTTGCAAATAGAGAAGCAGTGGTTACAACCATATCTTCTCGCAAGGCCACATTCTATAGCCGGTCACGATCAGCATTGTG GACGAAAGGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGATTGTGATCGCGATTCCATAATATACC TTGGAAAACCTGATGGGCCTACCTGCCACACAGGAGCAGAAACATGCTACTATACATCAGTCTTTGACTTGTTAAAAGAA CAAGAGGCTGATGGAAATAAATTGGCATTAACTTCTTTGTATGACTTAGAGTCTACAATATCCCAGCGCAAAGCAGAGTT AGCAGAAGTAGAAAATGGAAAGCCTTCTTGGACAAAGCGATTATTGCTTAATGATGAGTTGTTGTGCTCTAAAATCAGAG AAGAGGCAAATGAGTTGTGTCAAACACTAGAGAGTAATGAGGACAAGTCGCGTACTGCTTCAGAGATGGCTGATGTACTG TACCATGCCATGGTTTTGATGGCACGGAAAGATGTCAAAATGGAAGATGTTTTGCAGGTTCTTCGGCAAAGATTTTCCCA ATCTGGTATTGAGGAAAAGAGAAGTCGTGCGTCCCAGAAATCAGTGGACGGGTGA
Protein sequence (LotjaGi1g1v0635100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSYVHMLQSARGFHKCNLSFSSHEYPRRSYKTHHLVFASMHTSNPKVDSFLDSLKWDDKGLAVAIAQNVDTGAILMQG FANREAVVTTISSRKATFYSRSRSALWTKGETSNNFINVHDVFLDCDRDSIIYLGKPDGPTCHTGAETCYYTSVFDLLKE QEADGNKLALTSLYDLESTISQRKAELAEVENGKPSWTKRLLLNDELLCSKIREEANELCQTLESNEDKSRTASEMADVL YHAMVLMARKDVKMEDVLQVLRQRFSQSGIEEKRSRASQKSVDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 35 | 278 | 244 | 1.0E-106 | – | |
PANTHER | 35 | 278 | 244 | 1.0E-106 | – | |
Gene3D | 45 | 142 | 98 | 2.3E-30 | ||
SUPERFAMILY | 53 | 155 | 103 | 1.44E-37 | ||
Hamap | 54 | 266 | 213 | 30.072 | ||
Pfam | 78 | 151 | 74 | 3.6E-27 | ||
Gene3D | 165 | 261 | 97 | 5.2E-23 | – | |
SUPERFAMILY | 173 | 265 | 93 | 6.17E-15 | – | |
CDD | 173 | 261 | 89 | 1.31254E-26 | ||
TIGRFAM | 173 | 261 | 89 | 1.1E-20 | ||
Pfam | 175 | 264 | 90 | 7.3E-11 | ||
Coils | 209 | 229 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Histidine biosynthetic process | The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. | ||
Molecular function | Phosphoribosyl-AMP cyclohydrolase activity | Catalysis of the reaction: 1-(5-phosphonatoribosyl)-5'-AMP + H(2)O = 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide. | ||
Molecular function | Phosphoribosyl-ATP diphosphatase activity | Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + H(2)O = 1-(5-phosphonatoribosyl)-5'-AMP + diphosphate + H(+). |
Expression pattern of LotjaGi1g1v0635100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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