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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0635600 |
| Transcript ID | LotjaGi1g1v0635600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase domain-containing protein 1; TAIR: AT4G01040.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q68EX9|CHID1_XENLA Chitinase domain-containing protein 1; TrEMBL-Plants: tr|K7KH31|K7KH31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0635600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119045231..119046187) extracted from Lotus japonicus Gifu genome v1.2.
GTTATAGGTCCGCCATCATCTGAGAAGCTGCAAGAGCATGACTTTGGTCCAAGAGATCTTGAGACTCTAAGTGGAGCTGT GGATGGATTCTCGTTAATGACATACGACTTCTCTAATCCTCATAACCCTGGTCCTAATGCACCGTTGAAATGGATTCAAA TTATTCTACAGCTGCTTCTTGGGACCTCTAGCAGTAGAGCCCAAAGCGTCGCCCCCAAGATACTTCTTGGCATCAACTTC TATGGAAACGATTTCTCCCTTTCAAAGGGTAGTAGTTCCTTCCTTTGTTTTCTTCCTTTTCTTCTCACTAAAGTACTGGT GGCTAAAGAATCCCAACTAGGAGTAAATATTCAGTACTCACTTAGTACTCCTGCTTTCACATACAATCAGTTATTTTTTA TTTTTTTAAAAAAACTTTATAATGGGAAAACTAAATATAAAAGGGTAAGTGTCATTATTTTAATGGAAGTAGCACCTAGA TTTCCCCCTCACTAGTGGGAGGAGTGGGAAGGGGACTAGGGAAAGGGATGGTTCCATCATGTCATCATTTATATTCTTTC TTTATTGCTTGAGTGAAAGTGAGGACCTTTTGATATTCTGAGATCAGCTTAGAAGACTTTCCTTTTTGGTTTTTCTGTGT AAGTAATAAGTATACCATATAACAGCATTTTATTTTATATATTGGTGAAACTTGCAACTGCAGATTCAGGTGGCGGGGCA ATTACTGGGAGGGATTACTTGGCACTTTTAGAGAAGCACAGGCCGCTTCTGCAGTGGGATAATAACAGTGGGGAGCATGT TTTCTTTTACACCGACGACAAGGGCATCAAGCATGCGGTATTCTACCCATCTTTAAAGTCGATTTCCTTGCGGTTAGAGG AAGCTCATTCATGGGGATGTGGCATCTCAATCTGGGAAATTGGACAAGGCTTGGATTATTTTTTTGACCTTCTGTGA
CDS sequence (LotjaGi1g1v0635600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATACGACTTCTCTAATCCTCATAACCCTGGTCCTAATGCACCGTTGAAATGGATTCAAATTATTCTACAGCTGCT TCTTGGGACCTCTAGCAGTAGAGCCCAAAGCGTCGCCCCCAAGATACTTCTTGGCATCAACTTCTATGGAAACGATTTCT CCCTTTCAAAGGGTGGCGGGGCAATTACTGGGAGGGATTACTTGGCACTTTTAGAGAAGCACAGGCCGCTTCTGCAGTGG GATAATAACAGTGGGGAGCATGTTTTCTTTTACACCGACGACAAGGGCATCAAGCATGCGGTATTCTACCCATCTTTAAA GTCGATTTCCTTGCGGTTAGAGGAAGCTCATTCATGGGGATGTGGCATCTCAATCTGGGAAATTGGACAAGGCTTGGATT ATTTTTTTGACCTTCTGTGA
Protein sequence (LotjaGi1g1v0635600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTYDFSNPHNPGPNAPLKWIQIILQLLLGTSSSRAQSVAPKILLGINFYGNDFSLSKGGGAITGRDYLALLEKHRPLLQW DNNSGEHVFFYTDDKGIKHAVFYPSLKSISLRLEEAHSWGCGISIWEIGQGLDYFFDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 137 | 137 | 1.2E-56 | – | |
| PANTHER | 1 | 139 | 139 | 7.1E-58 | – | |
| SignalP_EUK | 1 | 35 | 35 | - | – | |
| Pfam | 1 | 130 | 130 | 5.6E-8 | ||
| SUPERFAMILY | 1 | 138 | 138 | 1.71E-9 | ||
| Gene3D | 50 | 103 | 54 | 1.2E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0635600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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