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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001223
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We have found 48 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.464s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0129629.1
n.a. Chain A, Crystal Structure Of Tamarind Chitinase Like Lectin (tcll)gi|512125378|pdb|4B16|A Chain A, Crystal Structure Of Tamarind Chitinase Like Lectin (tcll) Complexed With N-acetyl Glucosamine (glcnac)] gi|512125377|pdb|4B15|A chr0 58688576 58689884 +
2 domain predictions
1 GO term
Lj0g3v0284689.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase SD1-6-like [Fragaria vesca subsp]. vesca] gi|470104631|ref|XP_004288701.1| chr0 147733013 147737647 +
2 domain predictions
1 GO term
Lj0g3v0284719.1
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356565125|ref|XP_003550795.1| chr0 147741036 147743080 +
2 domain predictions
1 GO term
Lj0g3v0362579.1
n.a. PREDICTED: chitotriosidase-1-like [Glycine max] gi|356556606|ref|XP_003546615.1| chr0 191211338 191213015 +
2 domain predictions
1 GO term
Lj1g3v0177800.1
n.a. n.a. chr1 2016278 2017990 -
2 domain predictions
1 GO term
Lj1g3v0177810.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410-like, partial [Vitis vinifera] gi|359497026|ref|XP_003635401.1| chr1 2016830 2021310 +
2 domain predictions
1 GO term
Lj1g3v3918170.1
n.a. PREDICTED: chitinase domain-containing protein 1-like isoform X1 [Cicer arietinum] gi|502161879|ref|XP_004512315.1| chr1 45777800 45782714 -
2 domain predictions
1 GO term
Lj1g3v3918170.2
n.a. PREDICTED: chitinase domain-containing protein 1-like isoform X1 [Cicer arietinum] gi|502161879|ref|XP_004512315.1| chr1 45777800 45782753 -
2 domain predictions
1 GO term
Lj1g3v5021150.1
n.a. PREDICTED: acidic endochitinase [Vitis vinifera] gi|225454383|ref|XP_002279147.1| chr1 61248636 61253656 +
2 domain predictions
1 GO term
Lj1g3v5021150.2
n.a. PREDICTED: acidic endochitinase [Vitis vinifera] gi|225454383|ref|XP_002279147.1| chr1 61252115 61253656 +
2 domain predictions
1 GO term
Lj2g3v1267200.1
n.a. PREDICTED: acidic endochitinase-like [Cicer arietinum] gi|502094104|ref|XP_004490140.1| chr2 20157524 20158423 +
2 domain predictions
1 GO term
Lj3g3v0211980.1
n.a. Acidic endochitinase [Theobroma cacao] gi|508776152|gb|EOY23408.1| chr3 1331533 1332107 -
2 domain predictions
1 GO term
Lj3g3v0931350.1
n.a. chitinase homologue [Sesbania rostrata] gi|2072742|emb|CAA88593.1| chr3 11016132 11017927 -
2 domain predictions
1 GO term
Lj3g3v0931360.1
n.a. PREDICTED: acidic endochitinase-like [Glycine max] gi|356535818|ref|XP_003536440.1| chr3 11021622 11023678 +
2 domain predictions
1 GO term
Lj3g3v3120810.1
n.a. Chitinase [Medicago truncatula] gi|357499923|ref|XP_003620250.1| chr3 39014509 39016841 +
2 domain predictions
1 GO term
Lj3g3v3120810.2
n.a. Chitinase [Medicago truncatula] gi|357499923|ref|XP_003620250.1| chr3 39015846 39016841 +
2 domain predictions
1 GO term
Lj5g3v0525250.1
n.a. PREDICTED: chitotriosidase-1-like [Cicer arietinum] gi|502125066|ref|XP_004498784.1| chr5 5524517 5525463 +
2 domain predictions
1 GO term
Lj5g3v0525260.1
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356563922|ref|XP_003550206.1| chr5 5524790 5531765 +
2 domain predictions
1 GO term
Lj5g3v0525260.2
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356563922|ref|XP_003550206.1| chr5 5524790 5530721 +
2 domain predictions
1 GO term
Lj5g3v0526340.1
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356563922|ref|XP_003550206.1| chr5 5565007 5566164 -
2 domain predictions
1 GO term
Lj5g3v1190130.1
n.a. PREDICTED: acidic endochitinase-like [Glycine max] gi|356567519|ref|XP_003551966.1| chr5 19188445 19189344 +
2 domain predictions
1 GO term
Lj5g3v1961260.1
n.a. Chitinase [Medicago truncatula] gi|357443753|ref|XP_003592154.1| chr5 27765204 27766873 +
2 domain predictions
1 GO term
Lj5g3v1962290.1
n.a. PREDICTED: acidic endochitinase-like [Glycine max] gi|356535818|ref|XP_003536440.1| chr5 27772580 27773640 +
2 domain predictions
1 GO term
Lj6g3v1078650.1
n.a. PREDICTED: acidic mammalian chitinase-like [Cicer arietinum] gi|502131776|ref|XP_004501097.1| chr6 12960356 12961885 +
2 domain predictions
1 GO term
Lj6g3v1078660.1
n.a. n.a. chr6 12960356 12965800 -
2 domain predictions
1 GO term
LotjaGi1g1v0635600.1
n.a. Chitinase domain-containing protein 1; TAIR: AT4G01040.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q66IL0|CHID1_XENTR Chitinase domain-containing protein 1; TrEMBL-Plants: tr|G7K407|G7K407_MEDTR Glycoside hydrolase family 18 protein; Found in the gene: LotjaGi1g1v0635600 LjG1.1_chr1 119044691 119049941 -
2 domain predictions
1 GO term
LotjaGi1g1v0635600.2
n.a. Chitinase domain-containing protein 1; TAIR: AT4G01040.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q922Q9|CHID1_MOUSE Chitinase domain-containing protein 1; TrEMBL-Plants: tr|K7KH31|K7KH31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0635600 LjG1.1_chr1 119045231 119046187 -
2 domain predictions
1 GO term
LotjaGi1g1v0635600.3
n.a. Chitinase domain-containing protein 1; TAIR: AT4G01040.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q68EX9|CHID1_XENLA Chitinase domain-containing protein 1; TrEMBL-Plants: tr|K7KH31|K7KH31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0635600 LjG1.1_chr1 119045231 119046187 -
2 domain predictions
1 GO term
LotjaGi1g1v0788000.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P23472|CHLY_HEVBR Hevamine-A; TrEMBL-Plants: tr|G7L2X2|G7L2X2_MEDTR Class III chitinase; Found in the gene: LotjaGi1g1v0788000 LjG1.1_chr1 136080148 136081389 +
2 domain predictions
1 GO term
LotjaGi1g1v0788000.2
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P51614|CHIT3_VITVI Acidic endochitinase; TrEMBL-Plants: tr|B9I8R4|B9I8R4_POPTR Chitinase family protein; Found in the gene: LotjaGi1g1v0788000 LjG1.1_chr1 136080151 136081389 +
2 domain predictions
1 GO term
LotjaGi1g1v0788100.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P23472|CHLY_HEVBR Hevamine-A; TrEMBL-Plants: tr|A0A0D2RDX8|A0A0D2RDX8_GOSRA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788100 LjG1.1_chr1 136083400 136085194 +
2 domain predictions
1 GO term
LotjaGi2g1v0137400.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|A0A151S757|A0A151S757_CAJCA Acidic endochitinase; Found in the gene: LotjaGi2g1v0137400 LjG1.1_chr2 50232107 50233514 +
2 domain predictions
1 GO term
LotjaGi2g1v0223200.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|I1N156|I1N156_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0223200 LjG1.1_chr2 67928940 67929845 -
2 domain predictions
1 GO term
LotjaGi2g1v0297900.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|G7JXV4|G7JXV4_MEDTR Chitinase; Found in the gene: LotjaGi2g1v0297900 LjG1.1_chr2 77251470 77252484 +
2 domain predictions
1 GO term
LotjaGi2g1v0366100.1
n.a. Chitinase; TAIR: AT4G19800.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q7M443|CHIT2_TULBA Chitinase 2; TrEMBL-Plants: tr|A0A0L9V6Z7|A0A0L9V6Z7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366100 LjG1.1_chr2 86369661 86370951 +
2 domain predictions
1 GO term
LotjaGi2g1v0366300.1
n.a. Chitinase; TAIR: AT4G19720.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q7M443|CHIT2_TULBA Chitinase 2; TrEMBL-Plants: tr|A0A0L9V6Z7|A0A0L9V6Z7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366300 LjG1.1_chr2 86375458 86376563 +
2 domain predictions
1 GO term
LotjaGi4g1v0284200.1
n.a. Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q91XA9|CHIA_MOUSE Acidic mammalian chitinase; TrEMBL-Plants: tr|A0A1B1J8W5|A0A1B1J8W5_MEDTR Class V chitinase b protein; Found in the gene: LotjaGi4g1v0284200 LjG1.1_chr4 65643579 65645515 -
2 domain predictions
1 GO term
LotjaGi4g1v0284300.1
n.a. Receptor protein kinase, putative; TAIR: AT4G23200.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 12; Swiss-Prot: sp|O65472|CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12; TrEMBL-Plants: tr|A0A072US50|A0A072US50_MEDTR Cysteine-rich RLK (Receptor-like kinase) protein; Found in the gene: LotjaGi4g1v0284300 LjG1.1_chr4 65649702 65654364 -
2 domain predictions
1 GO term
LotjaGi4g1v0284600.1
n.a. Receptor protein kinase, putative; TAIR: AT1G11330.1 S-locus lectin protein kinase family protein; Swiss-Prot: sp|Q9SXB8|Y1133_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330; TrEMBL-Plants: tr|A0A151QSL2|A0A151QSL2_CAJCA Cysteine-rich receptor-like protein kinase 10; Found in the gene: LotjaGi4g1v0284600 LjG1.1_chr4 65682594 65687956 -
2 domain predictions
1 GO term
LotjaGi4g1v0284700.1
n.a. Chitinase, putative; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q13231|CHIT1_HUMAN Chitotriosidase-1; TrEMBL-Plants: tr|A0A1J7GHK5|A0A1J7GHK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0284700 LjG1.1_chr4 65699065 65702704 -
2 domain predictions
1 GO term
LotjaGi5g1v0054700.1
n.a. Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q9W5U2|CHIT3_DROME Probable chitinase 3; TrEMBL-Plants: tr|A0A1B1J8Z2|A0A1B1J8Z2_LOTJA Class V chitinase protein; Found in the gene: LotjaGi5g1v0054700 LjG1.1_chr5 9303828 9306228 +
2 domain predictions
1 GO term
LotjaGi5g1v0054800.1
n.a. Chitinase, putative; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q13231|CHIT1_HUMAN Chitotriosidase-1; TrEMBL-Plants: tr|A0A1B1J8Z2|A0A1B1J8Z2_LOTJA Class V chitinase protein; Found in the gene: LotjaGi5g1v0054800 LjG1.1_chr5 9317459 9323095 +
2 domain predictions
1 GO term
LotjaGi5g1v0055200.1
n.a. Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q9W5U2|CHIT3_DROME Probable chitinase 3; TrEMBL-Plants: tr|A0A1B1J8Z2|A0A1B1J8Z2_LOTJA Class V chitinase protein; Found in the gene: LotjaGi5g1v0055200 LjG1.1_chr5 9369386 9372829 -
2 domain predictions
1 GO term
LotjaGi5g1v0294000.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P36908|CHIA_CICAR Acidic endochitinase; TrEMBL-Plants: tr|I3SK63|I3SK63_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0294000 LjG1.1_chr5 61134300 61136122 +
2 domain predictions
1 GO term
LotjaGi5g1v0294100.1
n.a. Acidic chitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|Q41401|Q41401_SESRO Chitinase homologue; Found in the gene: LotjaGi5g1v0294100 LjG1.1_chr5 61158410 61160722 -
2 domain predictions
1 GO term
LotjaGi5g1v0294200.1
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P19172|CHIA_ARATH Acidic endochitinase; TrEMBL-Plants: tr|I3S5N5|I3S5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0294200 LjG1.1_chr5 61163574 61165954 +
2 domain predictions
1 GO term
LotjaGi5g1v0294200.2
n.a. Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P51614|CHIT3_VITVI Acidic endochitinase; TrEMBL-Plants: tr|I3S5N5|I3S5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0294200 LjG1.1_chr5 61163836 61165844 +
2 domain predictions
1 GO term
LotjaGi6g1v0206300.1
n.a. Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q13231|CHIT1_HUMAN Chitotriosidase-1; TrEMBL-Plants: tr|I3S8H4|I3S8H4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0206300 LjG1.1_chr6 50332508 50338560 +
2 domain predictions
1 GO term