Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0635700 |
| Transcript ID | LotjaGi1g1v0635700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT4G35670.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|G7JXT8|G7JXT8_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi1g1v0635700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119059429..119061899) extracted from Lotus japonicus Gifu genome v1.2.
GCTTAAGCATATTCTTGCTTCCACAATCATATCTTAGTGTTTTTTTATCTCCAAAATGAAAGGCATACTTTTAGTCCTTT TAATATTATTTTTCATTGCTACACCTACGTTGTGTGCTAGAGTAATGCTTGATGCAGATTCTAGCTTCGATGTTGTTAGC TACGGTGCAATAGGGGATGGTCAGACTGATGATTCACAGGTATATTTTTGCTACATCCATATTATGTCTTCTAATTATGA TTATAATTTATTTTTTACTTTTAAACATGTGACTAAAATTCTTAAAACTAATACAATTCTAAACTATTTTGCAATTTACA GGCCTTTGAGAAAGCATGGCAAACTGTTTGTGGTGCAACTCAAGACACCACAACACTTCTCATACCTGAAGGGAAAACAT TCTTGTTGCAACCCATTTTATTCAAGGGTCCTTGCAAAAGCAACACTATTAACATTGAGGTAAATTGTAAATAAATTAAT TGTTATAAACCTTGATTCAGTTATTTTCCATTGTAACAAAAAAACAACTTTTTTTTTAAAGAACAAAAAAAAAACTTGAA TCAGTTAAATTAAAGTAATTCATGAATTGGTTCATCATATAATGTTTTTCTAATATGACTTAAGAATTTGAATTGTTTTT TAAGAGTATTTTTTTCTTTGAAAAATATCAAATTTACGAGATGCACAATATTTTATCAACAAATTTTTTTTAAATGAATT TAATGCTTGAAATAATTTTCTTGAATTTTATTATGGTAAAAAGTATATTATTTATTTTCTCTATTTATTGTTAATATATT TTGTTCAATCGACTATAAGGTTCAAAATTCATTATTCTGTTTGCCAGTTTCAGGGAACTGTCATCGCTCCAAAAAATCCT GATTCTTGGAAATGGGGTACTGATCTTAGTAGGTGGGCATGGGTGAAGTTCCAGGGAATAAGTAACCTTATCATCCAAGG AGGAGGAACAATTGATGGCCAAGGTTCTTCTTGGTGGAACCAATACTCTAAGGATGAAGAAGAGGACGGGCCAAAAAAAC CAACTGTAAGTCCAAGAAAAACATGTTAGACTTTTATTTTGTGTTTAAACCACTTGCCTCCTCCACTGAGCCAATCATAT TCGAGGTAAACTTTTTGGCAGTCTATCATGATAAACTTGAAAAACATAATAGACCACTGAAAATTGAATATTTGAATTTA TAGATCCATTCAAATATATTTGGAGTAGCTAATGTTCAACATAATTGACCAAATCCGCAGGCACTTCAATTCATTGAATG TAAGAATCTAAAGCTTAAGAATTTAACTCACATCAACAGCCCACAAAATCATATTAGCATAGCTTCATGCAGTGACTCTA GCGTCTCCAACGCTCATATTATTGCCCCAGAGAAAAGTCCAAACACTGACGGGATTGATATCTCAGAATCATCTAACATC CTCATTGAGAATTCAAAGATTGAAACGGGTAATTAATTAATTTATACATACTCATCACTTCATTTTCAAGAATATTATTA TCATCCTCAATGATCACTATTTAATTTCATATTATTACCATATATTTAGATTGATTATAAATTTAAGAATAGAACCAATT TCATGTGATTTTGTTTTGTTTTCTTAGCTATTAATTATTACATATACAGGAGATGACTGCATTGCCATTAATAGTGGTTC TACCTTCATCAACATAACCGGTGTTACATGTGGTCCTGGCCATGGCATAAGGTCAATGATTTCAATTTTGAGATTATTTT ATTTAGATTCTTGACCAAAATTTAAACTCACTTTGGGTTATGTTGGCAATTTATAGTGTGGGCAGCCTTGGACGAAATGG AAAGTATGAAACAGCAGAAGAGATACATGTGCATAATTGTACCTTCATAGGGACTCAAAATGGAGCTAGAATCAAGACAT GGATGGTAATAATGATTGACTCTAATTTTGGATGAACTACTATAATGACGAAAGTATTAAATAAAAATATTTTTTTTTTA CCAGGGAGGATCTGGATATGCAAGAAAGATAAGATTTGAAGATATTATACTTGTTGGAGCAAAGAACCCTGTGATCATTA ACCAACACTATGAAGATAATGAATATAGTGGTCTAAACACGGCAGTGCAAGTGAGTGATGTGACTTATGAGAATGTGAGA GGAACCTCGGTTTCTGATGATGCAATCACATTGAATTGCGACGCTAAAGTTGGCTGCACCAATATTGTGTTCAATAATAT TAACATAACCTCTACAACTGGAGGGGAAGAACATGTGTCCTGCAATTACGCAAGCGGCAAATGCTCTATGAGTAATCCAA ATGTCACATGTCTTTATGGACAATAACAAAGGTTTTGATGTAGCTATGAAATGCTGAAATAAAAATCTATGTATGAAATG TTTGAGAGTCACAACATTGAAATAAAAATATATTAGTAGATGTTTAATTTTAATTGATTGATACAATGTGC
CDS sequence (LotjaGi1g1v0635700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGCATACTTTTAGTCCTTTTAATATTATTTTTCATTGCTACACCTACGTTGTGTGCTAGAGTAATGCTTGATGC AGATTCTAGCTTCGATGTTGTTAGCTACGGTGCAATAGGGGATGGTCAGACTGATGATTCACAGGCCTTTGAGAAAGCAT GGCAAACTGTTTGTGGTGCAACTCAAGACACCACAACACTTCTCATACCTGAAGGGAAAACATTCTTGTTGCAACCCATT TTATTCAAGGGTCCTTGCAAAAGCAACACTATTAACATTGAGTTTCAGGGAACTGTCATCGCTCCAAAAAATCCTGATTC TTGGAAATGGGGTACTGATCTTAGTAGGTGGGCATGGGTGAAGTTCCAGGGAATAAGTAACCTTATCATCCAAGGAGGAG GAACAATTGATGGCCAAGGTTCTTCTTGGTGGAACCAATACTCTAAGGATGAAGAAGAGGACGGGCCAAAAAAACCAACT GCACTTCAATTCATTGAATGTAAGAATCTAAAGCTTAAGAATTTAACTCACATCAACAGCCCACAAAATCATATTAGCAT AGCTTCATGCAGTGACTCTAGCGTCTCCAACGCTCATATTATTGCCCCAGAGAAAAGTCCAAACACTGACGGGATTGATA TCTCAGAATCATCTAACATCCTCATTGAGAATTCAAAGATTGAAACGGGAGATGACTGCATTGCCATTAATAGTGGTTCT ACCTTCATCAACATAACCGGTGTTACATGTGGTCCTGGCCATGGCATAAGTGTGGGCAGCCTTGGACGAAATGGAAAGTA TGAAACAGCAGAAGAGATACATGTGCATAATTGTACCTTCATAGGGACTCAAAATGGAGCTAGAATCAAGACATGGATGG GAGGATCTGGATATGCAAGAAAGATAAGATTTGAAGATATTATACTTGTTGGAGCAAAGAACCCTGTGATCATTAACCAA CACTATGAAGATAATGAATATAGTGGTCTAAACACGGCAGTGCAAGTGAGTGATGTGACTTATGAGAATGTGAGAGGAAC CTCGGTTTCTGATGATGCAATCACATTGAATTGCGACGCTAAAGTTGGCTGCACCAATATTGTGTTCAATAATATTAACA TAACCTCTACAACTGGAGGGGAAGAACATGTGTCCTGCAATTACGCAAGCGGCAAATGCTCTATGAGTAATCCAAATGTC ACATGTCTTTATGGACAATAA
Protein sequence (LotjaGi1g1v0635700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGILLVLLILFFIATPTLCARVMLDADSSFDVVSYGAIGDGQTDDSQAFEKAWQTVCGATQDTTTLLIPEGKTFLLQPI LFKGPCKSNTINIEFQGTVIAPKNPDSWKWGTDLSRWAWVKFQGISNLIIQGGGTIDGQGSSWWNQYSKDEEEDGPKKPT ALQFIECKNLKLKNLTHINSPQNHISIASCSDSSVSNAHIIAPEKSPNTDGIDISESSNILIENSKIETGDDCIAINSGS TFINITGVTCGPGHGISVGSLGRNGKYETAEEIHVHNCTFIGTQNGARIKTWMGGSGYARKIRFEDIILVGAKNPVIINQ HYEDNEYSGLNTAVQVSDVTYENVRGTSVSDDAITLNCDAKVGCTNIVFNNINITSTTGGEEHVSCNYASGKCSMSNPNV TCLYGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| TMHMM | 3 | 25 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 15 | 404 | 390 | 4.2E-161 | – | |
| PANTHER | 15 | 404 | 390 | 4.2E-161 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| SUPERFAMILY | 16 | 403 | 388 | 1.41E-121 | ||
| Gene3D | 20 | 403 | 384 | 5.0E-123 | ||
| Phobius | 21 | 406 | 386 | - | – | |
| Pfam | 63 | 394 | 332 | 2.1E-94 | ||
| SMART | 190 | 216 | 27 | 2700.0 | ||
| SMART | 217 | 238 | 22 | 9.4 | ||
| ProSitePatterns | 247 | 260 | 14 | - | ||
| SMART | 270 | 291 | 22 | 98.0 | ||
| SMART | 336 | 358 | 23 | 1900.0 | ||
| SMART | 364 | 391 | 28 | 3800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0635700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…