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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0637200 |
| Transcript ID | LotjaGi1g1v0637200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT1G12910.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9LPV9|LWD1_ARATH WD repeat-containing protein LWD1; TrEMBL-Plants: tr|A0A1D6X8W3|A0A1D6X8W3_PUEML WD40-1; Found in the gene: LotjaGi1g1v0637200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119230233..119233925) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGGTGGGCCCCTAAAACTCTTTCCCAAATCGTCTTTTTAAGATTAGATAATAGACCCTCTCCTCTCTCTTTTTCATT CTCTCTCAAGTGAACCGGAACCCCACTCTTCTCTTCTGTCTCCGCTTCACTCCTCCACCCTCCACCCATGGGCGTAACCA GCGACCCGACCCAAGACGGCTCCGACGAGCAGCAAAAACGCTCCGAGATCTACACCTACGAAGCCCCATGGCACATCTAC GCCATGAACTGGAGCGTCCGCCGCGACAAAAAGTACCGCCTCGCCATCGCCTCCCTCCTCGAACAATACCCCAACCGCGT CGAGATCGTCCAGCTCGACGACTCCAACGGCGAGATCCGACCCGACCCGAATCTCTCCTTCGAACACCCATACCCACCCA CCAAGGCCATTTTCATCCCTGACAAAGAGTGTCAACGCCCTGACCTCCTCGCCACCTCCAGCGACTTCCTCCGCGTGTGG CGGATCTCCGACGCCGATGAAACCCAACCCTCCGCCGCCACCCCCCGCGTCGAACTCAAGAGCCTCCTTAACGGAAACAA GAACAGCGAGTATTGTGGCCCGTTAACCTCCTTCGATTGGAACGAAGCTGAGCCTCGCCGCATCGGAACCTCCAGCATCG ACACCACCTGCACCATTTGGGATATCGAGAAGGAAACCGTCGATACCCAGCTCATCGCGCATGATAAGGAGGTTTACGAC ATCGCGTGGGGCGGCGTTGGGGTTTTCGCCTCCGTCTCCGCCGATGGCTCCGTTAGGGTTTTCGATCTCCGCGACAAGGA ACACTCCACCATAATCTACGAGAGCTCTGAGCCTGACACGCCGCTGGTGCGGCTCGGGTGGAACAAGCAGGACCCGCGCT ACATGGCGACGATCATCATGGACAGTGCGAAGGTGGTGGTTCTTGACATTCGCTTCCCCACGCTTCCGGTTGTGGAGCTT CAGCGGCATCAGGCTAGTGTTAACGCCGTCGCGTGGGCGCCGCATAGCTCTTGCCATATCTGCACCGCCGGCGATGACTC GCAGGCTTTGATTTGGGATCTTTCTTCCATGGGGCAACCGGTGGAGGGTGGGCTTGACCCGATTCTTGCTTATACTGCTG GTGCTGAGATTGAGCAGCTTCAATGGTCGTCTTCTCAGCCTGATTGGGTCGCCATTGCTTTCTCCACCAAGCTTCAGATT CTCAGGGTATGATGAATTGATGATTGATGTGAGTGAATGTGACTAGTTTTTTCTGGAAATTGGGGATAGTTTTAGGGTTT AAACATACTTCTAATGGTTCAATTGTTTGAATTGTTGAAAACCTTAATCTTGTTAATGAGTAGCCCTGGAATTAGAACTA AGAAGATACCTAGCAAGAACAAGTAGGGTCTGTATTGTCTCTCACATTCTTGTTTACTGGAGAATCCCATTGTTATGTAA ATGCTTTCACTATTCAGTTTCATCTATGTTTTTTTAACTTGTTTAAGAATCCTTACTTGTTATGTGTTGAACACTAGCTG TTGAACAAGCCATTTGGTATTGATTTTTCTGGATAATCGCTGAAATTTTGTTTTGGGTATGTGTGTGTGTATATGCCCTG AGATCTGCATTGTTCAATCTCTAACTGGACACACCATTTAAGAGAAAAGTGATGTAGAGTGGTGTGGTTGAAGTATAAAG TGAGCTCTGGTGGTGTCATACTGATTCCTCGTCTGCCCTTTTATCTCTACATTGCGGTGAAGTGTTCAATCTCTTCTATG ATACCTGGTATGCTGGTTTTCCTTTAAACTGACCAGGGTTCTGTAATTCGATTTTTGGCTTTCTTTATCTCTATTTTTTT CTTCTCTGAACACAAGGTTATTGAGGAGAAATTAGACTTTAGGGAAGCACTGGAAGTAACATTACCAATGTCTAAAACTG GTAGATGTTAAAGCATTGAAAGGATATATAAACCCTTCCTTTAACAAAATCCCAGTTGAAAGCTCATAAACTAAACCACT GTGCTTACTGGTTAGCCATGCTGACAGTGGTAAAATGAGATCGACAGTCTCAGTTCAGTTTGAGTAGAAAAACTATCATT GTACACTTTATAAAGTGTAGACACTTGTGATTGGTGATTTGAGAAAAGGAAGATAGATAGGAGAGACTGGTAACGTATAA TAGAGAGTGGAGTGCAGAAAAATATAGTTCTTTTGATTCATGTTTGGAAATTCTTCTATAAATTATCTCTAGAGCTCAAA TCAATTTTGTAAAGAAGTTTTTGTGAGTAGTTTCTATGTTTTGGAATGGACTCTTTAGGAAAAATAACTGATCCAAATAT GCTATCAAACATTTCGCGTTTGCCATGTGCTCCAAGTAATGTTCTTCCCAACAAGATTTTGCTTTCATGTTTTATTCCAA ATCCTTAAAGCATCTAAGTTAATGAAGTAACTACTTGTAATCTATATATGAAACCTAATTAAACTGGAAGGTAGAAACAC AAATACCCGTTTTTTTTAGATAAATAAATTTGGTCACTGTTGTATATGGTGATTAGAATTATACCTGGGTATACTGGTTA TGAAAAACCATGCTTTTACCTGAACAATTGTAATGTCATTGAGATTTGCGAATCATTTGCCGGTAGACACTAACATTTTA AATATCTTGCCGGCCTGTAAATTTATATGAAATTTTATTCTAGTGACTCCACTGCTCGACTGACAGAACAATTGGAGGAA ATGAACTGGTATAAGCAAGATTTCTAGCTTGTTTATCTCGTTTGATGGTCATGATGGTCAGGACTCAGGATAAAAGGAAG GAAAAACAAGAAAATTGGAAATAGGATATTGTAAAAGTAGGACAAACTCTTGTCATGTATTATTTTATCATGTGTTGAGG TTGATTGAGTAATGTTAGGATAGTTGAATAAGTTGACTATAATGGATTACGTGAATAATATGACTCGTTCCTATATATAA AAATACTTCAAAATTTACATATGCATAAAACTCATACCATTTACCAAACGTGTTACACTTGAAAAATTACATGAATACAA TATGAGAAGTAATCTCTCCTAAGAATGCCAAATATTATGCTTATTGTAATTTAAGGGGAGAATCTCAGCAAGCAAAGTCC CGCATGGGAGGGTTAAGGAGTAATGATATATACACACCTCATCTTTGAAACACTTCATTTCCACCTCTTTTTATTTCTAT CTCTCTCCTCTTATCATCTATCACATCTAATATTTTCTTTCTCTTACTTTTTCTTTTCTTCATATCTCTCTCTTCATTCC ACCTCTCTCCACCTCAAAGAGAGGTGTGAAGATAACATTATTGAGGGTTAAGCTTATCATCTCAGAACAAGTTTTCTATT GGTTTTGTTAACTAGGTCTAGCATGGCAACATGACGCGGCGGTTTCACCATTCTCATCCTTGCCTCTGTCAAGAACAGGA TGAGTTCGAGCAAGAGTTCAATGAATGCAGTGATAAAAATAATTTTGTTCGATAGGAAAGTAATATGAAAAAAAATGAAT AGTTTGTATTGGGTTTAGAGAGAGAAAATGAATAGTTTGTATGATGTCTATTTTATCTGAAATATAACGATAAAAATTAA ATTGACCTGCAATGTATGAGAGAGAGAAAGAGAAAGACAACTGAAATTTAAAAAAGAGAAATTATATCGTGCTAATGATG TTGCTGATTGCCT
CDS sequence (LotjaGi1g1v0637200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGTAACCAGCGACCCGACCCAAGACGGCTCCGACGAGCAGCAAAAACGCTCCGAGATCTACACCTACGAAGCCCC ATGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAAAAGTACCGCCTCGCCATCGCCTCCCTCCTCGAACAAT ACCCCAACCGCGTCGAGATCGTCCAGCTCGACGACTCCAACGGCGAGATCCGACCCGACCCGAATCTCTCCTTCGAACAC CCATACCCACCCACCAAGGCCATTTTCATCCCTGACAAAGAGTGTCAACGCCCTGACCTCCTCGCCACCTCCAGCGACTT CCTCCGCGTGTGGCGGATCTCCGACGCCGATGAAACCCAACCCTCCGCCGCCACCCCCCGCGTCGAACTCAAGAGCCTCC TTAACGGAAACAAGAACAGCGAGTATTGTGGCCCGTTAACCTCCTTCGATTGGAACGAAGCTGAGCCTCGCCGCATCGGA ACCTCCAGCATCGACACCACCTGCACCATTTGGGATATCGAGAAGGAAACCGTCGATACCCAGCTCATCGCGCATGATAA GGAGGTTTACGACATCGCGTGGGGCGGCGTTGGGGTTTTCGCCTCCGTCTCCGCCGATGGCTCCGTTAGGGTTTTCGATC TCCGCGACAAGGAACACTCCACCATAATCTACGAGAGCTCTGAGCCTGACACGCCGCTGGTGCGGCTCGGGTGGAACAAG CAGGACCCGCGCTACATGGCGACGATCATCATGGACAGTGCGAAGGTGGTGGTTCTTGACATTCGCTTCCCCACGCTTCC GGTTGTGGAGCTTCAGCGGCATCAGGCTAGTGTTAACGCCGTCGCGTGGGCGCCGCATAGCTCTTGCCATATCTGCACCG CCGGCGATGACTCGCAGGCTTTGATTTGGGATCTTTCTTCCATGGGGCAACCGGTGGAGGGTGGGCTTGACCCGATTCTT GCTTATACTGCTGGTGCTGAGATTGAGCAGCTTCAATGGTCGTCTTCTCAGCCTGATTGGGTCGCCATTGCTTTCTCCAC CAAGCTTCAGATTCTCAGGGTATGA
Protein sequence (LotjaGi1g1v0637200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVTSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRPDPNLSFEH PYPPTKAIFIPDKECQRPDLLATSSDFLRVWRISDADETQPSAATPRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG TSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 354 | 340 | 7.8E-158 | – | |
| PANTHER | 15 | 354 | 340 | 7.8E-158 | – | |
| Gene3D | 15 | 354 | 340 | 2.8E-41 | ||
| SUPERFAMILY | 27 | 309 | 283 | 1.83E-31 | ||
| SMART | 127 | 172 | 46 | 1.1 | ||
| ProSiteProfiles | 139 | 313 | 175 | 14.134 | ||
| ProSitePatterns | 159 | 173 | 15 | - | ||
| SMART | 175 | 213 | 39 | 1.8E-4 | ||
| Pfam | 182 | 213 | 32 | 0.12 | ||
| SMART | 264 | 304 | 41 | 2.3E-6 | ||
| Pfam | 271 | 304 | 34 | 0.018 | ||
| ProSiteProfiles | 271 | 307 | 37 | 11.143 | ||
| ProSitePatterns | 291 | 305 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0637200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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