Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0638800 |
| Transcript ID | LotjaGi1g1v0638800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial; TrEMBL-Plants: tr|K7MXR8|K7MXR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0638800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119526883..119530531) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTAAATACCATGAGTTGCTTGCTAGTAGCAATTTTATATAATTTTTTCACAAGAGGCACATTTTTCCTCTGGAAGCT TTATAAATGGCCCAACGCCCCAACTTCAATCAGTAGCATTGTGTTTGCTTTAGTTAACGTCGACAAGGATTTGGTATGTC ATTTCTCTCTCTGTCTCCATTCCCGCGAAATTTGAAGTTACTTTCTCCAAATCACTCCGTATAACAACAACTTGCGATTC TTGTCACACACTGCTTTTGATGTGCAAGTTAAGTATGTAATCAATTCGCTTTGCATTTCTCTGAGTCATTTTCTCAAACA CCTTCCGCTCAAGTTTTGAGAACCCAAGAAATTGGCTCATCTTGCTTTAGCGCTCTATACAAATTTCCAAAGATTGATTT GCACATTCTTCAATCATGATCAGAATCCGATCTAAGCTATCTTCTGTGCTGCAACGCATCAGCCAGACCAAACAAGGCGC GAATCACTTTCGTCGTCGTTTAGTTAATCCCAATGTTTTTGACACTGCTTTAGCTCCTCCACTAAATTTTGGTTACTTAC CGAGGCTCTTTTCAAGTTCATCTTCAATCAGAAGCCTTGGGGTGTCAACTGATTCCCCTGCTCTAGGATCAGATGAGGAT AACGATGATGGCGATGATGATGATGATGATGATTATGTTGATGGCAATGATAAGAATGGTACTAGATTACATATAAGGGA TGTTGTTCTTGCCCAAGATGTTAAAACCATTTTGGATATAATGCACGAACCGGGTTCTCGACCATCTGAGATTAAGCATA AGCTTGAGCTTTGCTGTGTTAGGGTGTCGTCAGAGCTGGTTGTGGAGGTCCTTTCGAGAATTCGCAACGATTGGGAAGCC GCGTTCACGTTTTTCTTGTGGGCTGGGAAGCAACCGGGGTATGCTCATTCGGTTCGTGAGTACCATTCCATGATCTCCAT CCTTGGGAAAATGAGGAAGTTTGATACTGCTTGGAACTTGATTGAGGTGATGAGAGGAGGTGGAACTGGTCCGTCTCTTG TCACCCCGCAAACTCTCTTGATCATGATCAGGAAATACTGTGCTGTGCGTGATGTTGGGAGGGCTATAAACACTTTCTAT GCTTTTAAGCGGTTTGGCTTTCAAGTTGGGATAGACGAATTTCAAGGCCTTCTTTCTGCCCTTTGCCGGTACAAGAATGT GCAGGATGCTGAGCACTTACTTTTCTGCAATAAAAATGTATTCCCTCTTGAAATCAAGAGCTTTAACATCATTCTGAATG GATGGTGCAACTTGATTGTTAGCGCGCGAGAAGCAGAAAGGGTTTGGCATGAGATGAGCAAGAGAGGAATCCAACATGAT GTTGTGTCCTATGCAAGCATCATGTCTTGCTATTCAAAATCTTCCAAACTTTACAAGGTGTTCCAGCTGTTTGATCAGAT GAAGAACAAGAAGATTACTCCAGATAGGAAGGTTTATAATGCTGTCATTCATGCTCTTGCGAAGGGTAGGCTTGTGAAAG AAGCTGTCAATCTCCTTCAAACAATGGAGAAAAACAATGTTACTCCTGATGTTGTTACTTACAACTCGCTGATCAAGCCC CTCTGCAAAAACCGCAAAATTGATGAAGCCAAAGAAGTTTTTAATGATATGATGAAGCGGAACATAACCCCAACAATTCG GACTTTTCATGCTTTCTTCCGAATATTAAGGGTTGAGGAAGAAGTATTTGAGCTTCTGGACAAAATGAGAGAGCTAGGGT GCTACCCAACTATTGAGACTTACATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCAAGCTGGATGAAGTCTTTAAGATA TGGAATATGATGAGGGAAGACGGAGTCAGCCATGATCGCAGCTCTTATATTGTACTGATTCATGGGCTGTTTCTGAATGG AAAGGTGAAGGAAGCACACGATTATTACATAGAGATGCAAAGGAAAGGGTTCCTCCCTGAACCAAAGACAGAACAGATGC TGCAGGCATGGCTTTCTGGGAGACAGGGAACAGAAGGCCAGGTGACAGATTTAGAACACAATCAATTGGAAGATGATACT GTTGAAAAGAAAGTCAAGGCCACACCCAGTAAATTTGATAAGGAAAAAGCTTTTCTTCGCGAACCCGAGACCAGAAGAGT AACAAGAGATCGGGGCTTTTCTTTCTGGGATCAGTAAATCCTTTTATATAACAAGAGGTCCAATGTCACTTCCTTTATCT ATGGACTATGAACATACGCTTGACTCTCGGTACCCTTTTCAAATTTGATTGTGTACTCCAAATAGGTGCTTGCCATGCTC TTTTCTTGGAACTTATCCAGACTTCAAGAGCCTTGGTGCCATTCTTAAAGCTAGGAAACCAGGTTTGTTAGTTGCAACAC AGTTGGAAACTTTGGGTTGAAATCTTTACTGATCTAAATGTCATTGATTGCTCCTTTGCTACTGGTTAACCTTGGCGAAT GTTGTAATGCTGGAGCTAAACTTAGGTGCTTGTATATGTTCACCAGCTTTGGATAAATTCCGAGCAGGTGAAGCTAGTAG AAACTTGAACAACTGTTTTGATCTCTTCAATTGCAGAGAAAAATGAATTCATAGTTGCTTGCTGGCTGGGACCTATTATC ACAGAATCTAGTCCAGAAGTAAAATTAGCACAGAATGAGTTAAATTAATATGTTCGACCTAAGTTTCCTATGAAGTATGT GAGGCAGCTTCACTAAATGACCGATTCTTGTACGGATTAGAGAAGCTAAAGGGAGAGGGGAGCTGCTTAGACGAGCTGGA CTTGTATGTCGTTGCTGTCATGCACTCATGCTTTGAATTTAACGGCTGGCTTTGTTTTTCCTAGCTAAACAAAAATTTCA TTTCAAATTGGTAGAATAGGGATTCTACTCATGCTTTGATGATTTTAATTGAGGAGGCCTAAGCAATGCAGTCAATTTGT AGGCCTTCATTGAGTGAAAAGTATCTATCAATGCATTTGGGAAGGCCATTCTTTGTACAATACATGGGCAAAAGGAGTGC TAGATGGTATTTCCCCATTTGATTTTAGAGTAACCATATGCGTCATACTTGGTATCCGTATGCCCCTATGGAGTTGAAAA CAAACTCTTTGACTTTGGTTTTTAGTTTACGGGGCATATATACACATTTTCAGTGCTATATATTATGAATGTTAAATAGT ATCAAGTAGCAAATAGCAATGTTCATAGTTTCATAAAAAAAAATAAAAAGAGTAAAATACACTCCTCTCCCTTTAGGTTT GTCAAAATGACACCCAACCCCATTCTTAACCAAATTCTACACTCCACCCCACTAAATCTAACAAGTTAACTACATGTTAA AAGATGTTAACGGAATATTCTCTTTAATTCCAAACTAATAAATTTAAATATTTAAATAATTATAAATTAAAAAAAATCCC TTTATTATTTTTTATTTCAAGAAGTTTAAGATATTTACAATTAAATATTTTCACAATATTGTATAGGAATATCAATAACA TTTAAGTTTACAAATATAAATTTAGACTAAACAAATACTTCTATTTTTCTTTTAACCTATTTTCATGATTAATTGTACTA ACAAAATTCCATGATTAATTAGATGACATTGATTCCAATTAAAAGCCCG
CDS sequence (LotjaGi1g1v0638800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAGAATCCGATCTAAGCTATCTTCTGTGCTGCAACGCATCAGCCAGACCAAACAAGGCGCGAATCACTTTCGTCG TCGTTTAGTTAATCCCAATGTTTTTGACACTGCTTTAGCTCCTCCACTAAATTTTGGTTACTTACCGAGGCTCTTTTCAA GTTCATCTTCAATCAGAAGCCTTGGGGTGTCAACTGATTCCCCTGCTCTAGGATCAGATGAGGATAACGATGATGGCGAT GATGATGATGATGATGATTATGTTGATGGCAATGATAAGAATGGTACTAGATTACATATAAGGGATGTTGTTCTTGCCCA AGATGTTAAAACCATTTTGGATATAATGCACGAACCGGGTTCTCGACCATCTGAGATTAAGCATAAGCTTGAGCTTTGCT GTGTTAGGGTGTCGTCAGAGCTGGTTGTGGAGGTCCTTTCGAGAATTCGCAACGATTGGGAAGCCGCGTTCACGTTTTTC TTGTGGGCTGGGAAGCAACCGGGGTATGCTCATTCGGTTCGTGAGTACCATTCCATGATCTCCATCCTTGGGAAAATGAG GAAGTTTGATACTGCTTGGAACTTGATTGAGGTGATGAGAGGAGGTGGAACTGGTCCGTCTCTTGTCACCCCGCAAACTC TCTTGATCATGATCAGGAAATACTGTGCTGTGCGTGATGTTGGGAGGGCTATAAACACTTTCTATGCTTTTAAGCGGTTT GGCTTTCAAGTTGGGATAGACGAATTTCAAGGCCTTCTTTCTGCCCTTTGCCGGTACAAGAATGTGCAGGATGCTGAGCA CTTACTTTTCTGCAATAAAAATGTATTCCCTCTTGAAATCAAGAGCTTTAACATCATTCTGAATGGATGGTGCAACTTGA TTGTTAGCGCGCGAGAAGCAGAAAGGGTTTGGCATGAGATGAGCAAGAGAGGAATCCAACATGATGTTGTGTCCTATGCA AGCATCATGTCTTGCTATTCAAAATCTTCCAAACTTTACAAGGTGTTCCAGCTGTTTGATCAGATGAAGAACAAGAAGAT TACTCCAGATAGGAAGGTTTATAATGCTGTCATTCATGCTCTTGCGAAGGGTAGGCTTGTGAAAGAAGCTGTCAATCTCC TTCAAACAATGGAGAAAAACAATGTTACTCCTGATGTTGTTACTTACAACTCGCTGATCAAGCCCCTCTGCAAAAACCGC AAAATTGATGAAGCCAAAGAAGTTTTTAATGATATGATGAAGCGGAACATAACCCCAACAATTCGGACTTTTCATGCTTT CTTCCGAATATTAAGGGTTGAGGAAGAAGTATTTGAGCTTCTGGACAAAATGAGAGAGCTAGGGTGCTACCCAACTATTG AGACTTACATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCAAGCTGGATGAAGTCTTTAAGATATGGAATATGATGAGG GAAGACGGAGTCAGCCATGATCGCAGCTCTTATATTGTACTGATTCATGGGCTGTTTCTGAATGGAAAGGTGAAGGAAGC ACACGATTATTACATAGAGATGCAAAGGAAAGGGTTCCTCCCTGAACCAAAGACAGAACAGATGCTGCAGGCATGGCTTT CTGGGAGACAGGGAACAGAAGGCCAGGTGACAGATTTAGAACACAATCAATTGGAAGATGATACTGTTGAAAAGAAAGTC AAGGCCACACCCAGTAAATTTGATAAGGAAAAAGCTTTTCTTCGCGAACCCGAGACCAGAAGAGTAACAAGAGATCGGGG CTTTTCTTTCTGGGATCAGTAA
Protein sequence (LotjaGi1g1v0638800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRIRSKLSSVLQRISQTKQGANHFRRRLVNPNVFDTALAPPLNFGYLPRLFSSSSSIRSLGVSTDSPALGSDEDNDDGD DDDDDDYVDGNDKNGTRLHIRDVVLAQDVKTILDIMHEPGSRPSEIKHKLELCCVRVSSELVVEVLSRIRNDWEAAFTFF LWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTFYAFKRF GFQVGIDEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLEIKSFNIILNGWCNLIVSAREAERVWHEMSKRGIQHDVVSYA SIMSCYSKSSKLYKVFQLFDQMKNKKITPDRKVYNAVIHALAKGRLVKEAVNLLQTMEKNNVTPDVVTYNSLIKPLCKNR KIDEAKEVFNDMMKRNITPTIRTFHAFFRILRVEEEVFELLDKMRELGCYPTIETYIMLIRKFCRWRKLDEVFKIWNMMR EDGVSHDRSSYIVLIHGLFLNGKVKEAHDYYIEMQRKGFLPEPKTEQMLQAWLSGRQGTEGQVTDLEHNQLEDDTVEKKV KATPSKFDKEKAFLREPETRRVTRDRGFSFWDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 62 | 93 | 32 | - | – | |
| MobiDBLite | 71 | 89 | 19 | - | – | |
| Gene3D | 125 | 292 | 168 | 1.0E-15 | ||
| PANTHER | 153 | 265 | 113 | 3.1E-67 | – | |
| ProSiteProfiles | 172 | 206 | 35 | 9.01 | ||
| Pfam | 176 | 202 | 27 | 0.15 | ||
| ProSiteProfiles | 210 | 244 | 35 | 6.862 | ||
| ProSiteProfiles | 279 | 314 | 36 | 8.67 | ||
| PANTHER | 280 | 431 | 152 | 3.1E-67 | – | |
| TIGRFAM | 282 | 315 | 34 | 0.0031 | ||
| Gene3D | 295 | 433 | 139 | 1.8E-41 | ||
| ProSiteProfiles | 315 | 349 | 35 | 11.378 | ||
| Pfam | 315 | 363 | 49 | 2.8E-11 | ||
| TIGRFAM | 317 | 350 | 34 | 6.6E-7 | ||
| ProSiteProfiles | 350 | 384 | 35 | 11.093 | ||
| TIGRFAM | 353 | 386 | 34 | 2.4E-6 | ||
| Pfam | 384 | 429 | 46 | 4.0E-14 | ||
| ProSiteProfiles | 385 | 419 | 35 | 14.074 | ||
| TIGRFAM | 387 | 420 | 34 | 9.0E-10 | ||
| ProSiteProfiles | 424 | 451 | 28 | 5.108 | ||
| PANTHER | 434 | 522 | 89 | 3.1E-67 | – | |
| Gene3D | 434 | 574 | 141 | 2.1E-21 | ||
| ProSiteProfiles | 452 | 486 | 35 | 9.997 | ||
| Pfam | 455 | 498 | 44 | 1.4E-7 | ||
| TIGRFAM | 455 | 487 | 33 | 8.7E-7 | ||
| ProSiteProfiles | 487 | 521 | 35 | 11.016 | ||
| TIGRFAM | 490 | 521 | 32 | 1.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0638800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…