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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0639300 |
| Transcript ID | LotjaGi1g1v0639300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07970.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P35336|PGLR_ACTDE Polygalacturonase; TrEMBL-Plants: tr|A0A151TM36|A0A151TM36_CAJCA Polygalacturonase; Found in the gene: LotjaGi1g1v0639300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119572149..119575975) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTCTGAAGTACATTTTGCCTCTAACTCACAGTTATTATTCCCTCTCTAGAAAAGCAGCTCTACGTTTTTCTATAAG TACATAGCATTACCTCTTCATTTGGCACTTTACCACAAATCTCTTCGACTGCCCTCCATTCATTTATTTCTTTTCAGTTT TCTCACAAAGTGAAACATCAAAATGTCTCCACAAACACCAATTATCTCACTTCTCATCATCCTCACCTCATTACTCTTAT GTAACGGTTATTACATAGAGGAACCACTTCATGAAACAAAATATGAACAATTTGGTCACTACTACAACCCTGTGCATGAT GAGAGGTTGATCAAAAGAGAAAATGGACATAATTTTGGTCACTACTACCACCCTTTGATCAGAGAAAAGCATGAACATTT TGGTCATGTAACAAGGGCCAATAATAGAGCTACCCCTCTTTCTTCAAGGCCTGGTGGAACAGTTAGTGTTGATGATTTTG GAGCCAAAGCAGATGGAAGAGATGATACCCAGGTAAATATATCTTATCAACAAAAAGGTGAAACTTTTTTTCCATGTGAA TTTAATCCATTTTTAATGTCTATCAATTATCTTTTCTTTGAACATTTTCTCATGCACTTCAGGCATTTAAGAAGGCATGG AATGAAGCATGTTCTACTGGGGCTGTCCTTGTGGTACCTGAAAAAAGGGTCTATCATCTTAAGCCAATCACTTTTTCAGG TCCATGCCAACCAAACACTGCCTTTATGGTGAGATACATATTCACAAGTAAATTTCCGTACATGTTTGCATATACTTCTA TAATTGATTAATCAATATTTGAGAGAAGCTTATGCGAATAGCTTTTGTGTGCCATAATTGATTCTGGACAAAGAGAAGTT GTTTCAAACATGCTATTAATGAAAAGTAGCTAATTTTAACTTTTTTTTAACTTTCATGTTCATGAGAAATTCATTGTAAT TGTTTCTGTTTCCCTAATCCATCATATTAGCTCCATGGGACAATGGAGGCATGGACTCAAATGTCAGCATATGAAGGAGA TAGACAACACTGGATAGTGTTTGACAGTGTCACAAATTTCAAAGTTGACGGTGGTGGCACTTTCAATGGAAATGGGAAAA ACTGGTGGCAAAAATCCTGCAAAACCAATAACAACCTTGTAAGTGGATGTTTAATTTCACAATTTGCACATAATCCGATG CAAATTTACTCAGAAGCTGAGACACTTAGCTTTTAATGAGAAGTGATTCCAAACTATTTCATCGTAGAGCTTGTTTTTCT TCCAATTCTATTTATTTTAAGCTTTGTTCTTGTGATTCTGAATATTGACCTTCATTCCATTCCTTTTCTTTCATTGATTC ACAGCCATGCAATAATGAACCAAGACCAACAGTAAGCTAACATTCTTCAAACCATGAAGTTTTATTTACCTCATAGTAAT ATGTTACAATGAGCTGATGCAGAGTGTTCTGTTTTTTTAACTGACTTTTTCTTGCTTTTATGGTAAACTTGTTATATAGG CTGTGACTTTCTATCATTGCAACAACTTGAGAGTGAAGAATCTGAGGTTCAAAGATGCACAACAAATGCATGTAACCTTT CAGGAATGCTTCGATGTTGATGTTTCCAATCTTGTCATCAAAGCACCAGGGGATAGCCCTAACACTGATGGAATCCATGT CGCAGAAACACAAAATATTGTCATAAGAAACAGTGTAATTGGGACAGGTAAAATCCAAGAATATCAAAGAAAAAATAGTC AATTGGGTTTAGATTTAGATTTTTAATTTTTTTGTCATGTTGTTTTGAAGGTGATGATTGTATTTCAATAGTCAGTGGGT CAAGAAATGTTAGAGCCACAGATATCACATGTGGACCTGGACATGGAATCAGGTTTATATTCTAAGTTAAGAAATTAGTT TAGATAAATTTGAAATAAATTGGTTAAAATGCTGATATAATAATGTCTTGTTGGTTAAAATGCTGATATAATAATGTCTT GCAGCATTGGAAGCTTAGGAGCTGATAACTCAGAAGCTGAAGTTTCCAATGTGATGGTGAATGGAGCCACCCTAAGAGGA ACAACTAATGGGGTGAGAATAAAGACTTGGCAGGTAAGAGTTGGTCTTGAGGTTTTGAAATTTGGTCTGTTAGGCACTCT ACAACTTTGACACAGTTGAAAGAATGAAATGGACTAGTGGAGGTTAAGAATAAAATTTGCAAAAAGAAGAATTTCAACTT ATCAACTCAATTTATCATTTTGGCTTTGTTTAGAATAACCTAGTTAAACTATTGCCCCATGAACAGCAATTGCCAAATTT TAGGTGCAACACTGATTATACAAACATTGAGAAGTTGACAAATGAAATTGGAATGTGAGGAAAATAGTGCACTCAAGTTT GACAAATTTCCACTTTGTTGGTTGATGTTTTCTTAACCACCCTTTGGGTTAACAAGCCCTATTAAATGCTTTATCTAATT ATAGCGTGTATGTTTATGCAGCAGAAAGTCACGTGATCAATTTTAGGGAGAAGTTACAAAGAGTGGGGCATCTAGGATTA TCATGTTTTCATTTGTGTGTCCATCAGCAATCCAAACGTGCTAGTAGTAAAATAAGGGAAAATTTAGTGCTATTAAGCTC CCACCATGCTATTTAGTGCTATCATGTGTAAAATAACACTGCTCACTTTGTGTATCTAATGTAGCAGTGTTATTTTACAT TTTTGCAAGAGGCAAATTCTGCAGCGCTTGAACTTGTGACTGCAAAATCACATGATAGTAACCTTATTGTTAAGCCAGAG CTCGCCCTCCCAAACATGCTATTAGTATTGCTTTTAATTGGCTCAGAGCTAAAAGATTCTTCATATAACTACTACATAAT ACATTATTATATGTGAAAAAGTATATAACCAAAGAAAGTTGTGATTTTTATTATGATATCTCATGTACTTTGACTCTATC TCAACACAGGGAGGTTCTGGCTATGCAAAAAACATCAAATTCTTGAACATAAAAATGCAAAATGTAACAAATCCCATAAT CATAGATCAGAACTACTGTGATCAAGCAGAGCCATGCCAAGAGCAGGTAACAACCAATTTCTCAACCTCCAATCATGACC CTTTAAAGAGTGCAACCTTTTCATTAATTGTGTGATAATCATAAATAACCATCTTTGATCAAAACTGCAGGACTCAGCAG TGAAATTAAGCAATGTTTTGTATCAAAACATCATAGGAACAAGTGCTTCAGAAGTGGCTATCAAATTTGACTGCAGCAGA ACTGTTCCTTGCAGAGGAATCTACCTGCAGGATGTGATTCTGGAACCAGAAGGAAGTGGTGGCACCACTGCTTCATGTGA GAATGTTAGATATGTGAATAGAGGAAAGTTTTTTCCTCAATGCTCTCCTTGAAGAAATTAAGAAAAGGAAGAGTTTAAGT TACTACCCTTCAAAAAAGGTTACAACAAAATATAAGTTACTTAGAATTTTCCATAAAGGTATGTTTCATTTCTACAAATA AACAAGCTATGTTCTTAGTCTTTTACACACTTGTATATTATTATATTTATAGGTCGGTAACTGAGAAATAGTTGAGCAGA CTTTTGTGGATGCTGCCATTCCTAACGACAGTTTTGCAATGAATGGAGGCAAAATAGGTGAACCAAATAAACATGTAACA AACATAAAAGTGATGTCTAATGTGTAATCATATCTCAACTACTACCAGTTACTAACAGCACATGAAGAGTTGATTTTCGT ATATACTACCATAACTAACTGGACTTTGACTGTTTGAAAAAAACAAGCATAGACTTTTGGGTTCTGC
CDS sequence (LotjaGi1g1v0639300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCACAAACACCAATTATCTCACTTCTCATCATCCTCACCTCATTACTCTTATGTAACGGTTATTACATAGAGGA ACCACTTCATGAAACAAAATATGAACAATTTGGTCACTACTACAACCCTGTGCATGATGAGAGGTTGATCAAAAGAGAAA ATGGACATAATTTTGGTCACTACTACCACCCTTTGATCAGAGAAAAGCATGAACATTTTGGTCATGTAACAAGGGCCAAT AATAGAGCTACCCCTCTTTCTTCAAGGCCTGGTGGAACAGTTAGTGTTGATGATTTTGGAGCCAAAGCAGATGGAAGAGA TGATACCCAGGCATTTAAGAAGGCATGGAATGAAGCATGTTCTACTGGGGCTGTCCTTGTGGTACCTGAAAAAAGGGTCT ATCATCTTAAGCCAATCACTTTTTCAGGTCCATGCCAACCAAACACTGCCTTTATGCTCCATGGGACAATGGAGGCATGG ACTCAAATGTCAGCATATGAAGGAGATAGACAACACTGGATAGTGTTTGACAGTGTCACAAATTTCAAAGTTGACGGTGG TGGCACTTTCAATGGAAATGGGAAAAACTGGTGGCAAAAATCCTGCAAAACCAATAACAACCTTCCATGCAATAATGAAC CAAGACCAACAGCTGTGACTTTCTATCATTGCAACAACTTGAGAGTGAAGAATCTGAGGTTCAAAGATGCACAACAAATG CATGTAACCTTTCAGGAATGCTTCGATGTTGATGTTTCCAATCTTGTCATCAAAGCACCAGGGGATAGCCCTAACACTGA TGGAATCCATGTCGCAGAAACACAAAATATTGTCATAAGAAACAGTGTAATTGGGACAGGTGATGATTGTATTTCAATAG TCAGTGGGTCAAGAAATGTTAGAGCCACAGATATCACATGTGGACCTGGACATGGAATCAGCATTGGAAGCTTAGGAGCT GATAACTCAGAAGCTGAAGTTTCCAATGTGATGGTGAATGGAGCCACCCTAAGAGGAACAACTAATGGGGTGAGAATAAA GACTTGGCAGGGAGGTTCTGGCTATGCAAAAAACATCAAATTCTTGAACATAAAAATGCAAAATGTAACAAATCCCATAA TCATAGATCAGAACTACTGTGATCAAGCAGAGCCATGCCAAGAGCAGGACTCAGCAGTGAAATTAAGCAATGTTTTGTAT CAAAACATCATAGGAACAAGTGCTTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAACTGTTCCTTGCAGAGGAATCTA CCTGCAGGATGTGATTCTGGAACCAGAAGGAAGTGGTGGCACCACTGCTTCATGTGAGAATGTTAGATATGTGAATAGAG GAAAGTTTTTTCCTCAATGCTCTCCTTGA
Protein sequence (LotjaGi1g1v0639300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPQTPIISLLIILTSLLLCNGYYIEEPLHETKYEQFGHYYNPVHDERLIKRENGHNFGHYYHPLIREKHEHFGHVTRAN NRATPLSSRPGGTVSVDDFGAKADGRDDTQAFKKAWNEACSTGAVLVVPEKRVYHLKPITFSGPCQPNTAFMLHGTMEAW TQMSAYEGDRQHWIVFDSVTNFKVDGGGTFNGNGKNWWQKSCKTNNNLPCNNEPRPTAVTFYHCNNLRVKNLRFKDAQQM HVTFQECFDVDVSNLVIKAPGDSPNTDGIHVAETQNIVIRNSVIGTGDDCISIVSGSRNVRATDITCGPGHGISIGSLGA DNSEAEVSNVMVNGATLRGTTNGVRIKTWQGGSGYAKNIKFLNIKMQNVTNPIIIDQNYCDQAEPCQEQDSAVKLSNVLY QNIIGTSASEVAIKFDCSRTVPCRGIYLQDVILEPEGSGGTTASCENVRYVNRGKFFPQCSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 462 | 460 | 3.5E-249 | – | |
| PANTHER | 3 | 462 | 460 | 3.5E-249 | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 462 | 440 | - | – | |
| Gene3D | 78 | 457 | 380 | 5.7E-121 | ||
| SUPERFAMILY | 90 | 461 | 372 | 6.28E-123 | ||
| Pfam | 125 | 449 | 325 | 2.7E-102 | ||
| SMART | 247 | 273 | 27 | 210.0 | ||
| SMART | 274 | 295 | 22 | 400.0 | ||
| ProSitePatterns | 304 | 317 | 14 | - | ||
| SMART | 327 | 348 | 22 | 140.0 | ||
| SMART | 356 | 377 | 22 | 3100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0639300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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