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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0640300 |
| Transcript ID | LotjaGi1g1v0640300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT1G64760.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q6NKW9|E138_ARATH Glucan endo-1,3-beta-glucosidase 8; TrEMBL-Plants: tr|I1ML36|I1ML36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0640300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119734397..119738026) extracted from Lotus japonicus Gifu genome v1.2.
CGTTATGCCATCTCTAAAACCGCGGTTAAAAGGTTTACCCTAATAATAAAAAACGTGTTGGAATTTGTCTTTTAGTATTT CCTTCCATCCACTTTCCTTCTCACAACTTCCATAATTTCTGTTTCCTTTTCTTCTCACTCACTCCTCACAAGCCACAACT ATTCCCCATCCTGTTTTTCACTAGAAGAAAAAGACATAAAAAAGTACACATTATTTTTCATTTTGTGTTAAATTTCTCTG GCAATTCTGACCTGTGCGACTCGACCCGACAGTGCAACCCTTCCGAAATGAACTTTCGACCTAAGTTCAAACAGTTACTT TTTACCACTACGACCGACATCGGCAGCGCTGTCGGTGCGTGAAAATTGTGATATTTATTTATTTACTATTGTGCCCTGTT TTTACCCTTTTTTTTTCTATTTATTTGATATTCTCCACCTATCACCATCTCATTCTTATTAGTGGGGTTCGTGGGGTTGT GAAAAAGCTGCAAACTATTCGCTGATCTTCAAACCCCACTTCCAAAAACGGTTACTTTCTCTCTTTTATAAACCCAAACA TCTCACTTTCACTTCAACTTCAACCAAATCTTTCTGAGCTTTTTGATTTGATTCATTCTGCAATGGTTGAAAACTGGGTT TTCCGATGGGTGGTGTTGGTGGTTGCGGCGGCGGTGATGGGCGTGGAAGGGCTTGGTGTGAACTGGGGAACCCAAGCGAC CCACAAGCTGCCACCGGCGACGGTGGTTCAGTTGATGAAGGATAATGGGATTCAGAAGGTGAAGCTTTTTGATGCGGATG ATTCCACCATGGCTGCTCTTGCTGGGTCTGGGATTGAAGTCATGGTTGCAATCCCTAATAATCAGCTTGCTGTCATGAAT GACTATGGTCGAGCCAAACAATGGGTTAGGAAGAATGTCACTCGTTACAACTTCAATGGTGGAGTTAACATCAAGTGAGT TTTTTTTTTTTTTTTTTCCAGTTAATTTTGGATTTTTCATGTCGATTTTGTTGGCTGATTTGGTTGCAGATGATGTTGTT GCTTGTTAGATTAGTCATTGATTGTTGTTCAGACTGGATTTCTTGTAGAATTTGTGTTTGGCTAGTTGTTGCTTTTATTC CTTTTTTGTTTGATGAAGAGTTTAGGAACCAGACAAGGAAATGTGTGCAAAGAATCTTTCAAAAGTGAACCAAAAAGTTT GCTTTTGTATCAATGAAGCTCTAAGGGATCCCCCAGAATTATATTCCTTTTTTTGGGTAGTGGTGCACTGCTTGATTGCC TTGTAGTAACAGGAAAATGTTTTTTTTTTCTGGGTGTCTAAGAATCTATTGGTTTAGAGTTAGAAATCATCTTGAACTAC TTGAACAAAAACTCTAAGAATCATTTTTCCATTCTAAGAGGTGATTGCTGCCTAGTATTTGGGGGAGTAAAAGATTTAAA CATGTATAATAATCCTCACATAGGATGATACTTGTACGCTTTTTTTACCACCCATCCAACTCCTTATTTTGTTTTGGGCA CTTAATAATAATCCATGAAAGTGAGGGATTTTGTGTGTGGTTTTATCATATGCTGGGAAGGAAAGACTCCTCTTTTTAGT GTGTGTGTGTGGGGGAACAATTAGAACTTGGTAGGCATGCTTCTTGGTTCTGTGGCCTGCAATTCTCCAGTTTTTACCTT CTGCATTGGTTAATGAGAAGTTTGAATAAATTTAAAGGAGCTAGTTTGATTGGTGTTTCTAGAGAATTTATTTACTCTAG AGATTTTGTATTTTCATAGTTTCATGGGATTTCTTGAACATTCAGATGGAAAGCAGGCTAACTGGATGTGGATTCATAGT TTCGTTACTTTCGTAGCTTTAGAGTGTGTTTGGCTTCCACCCAATACTACTTTTTTTTTTCAAATTCCAAAGCAAAAAAC AAGGAATATACAGTTCAATGACAAAACATGAAAGGAAGTTCTTACTTTCATTTAATTCAACAGGAATCCAAGTGTTACTC TTTGAGGTTATAACATAAGTTTCATAATGGTGTTGTAACTCTTCACAAATATGTTATTGCCACCTTTACTAGGAAGCATT AATACTGTCATGGTGTGGAAATTTTGCCAATTTTGATGTTTGAATTAGTAAATTACAATGGAATGTATATTTTCCTTCTC TGAACTATTTTTATTGATTTTCCCTTCTGACCAATTTTGATGTGCATTCATGCATTCTATCTATATTCTTTTGCAGGTAT GTTGCAGTTGGGAATGAGCCATTTTTGAAATCTTACAACAATTCATTCTTGAACATTACTCTACCTGCACTGCAGAACAT TCAAAATGCCCTCAACGAAGCCGGTGTCGGAGATACCGTAAAGGCTACAGTGCCCTTGAATGCTGATGTCTACCAGTCTC CACAGGATAATCCAGTTCCTTCAGCAGGAATATTCAGGCCTGATATCAGTGGTCTCATGACTCAAATGGTGCAATTTCTC AGCAAGAACGGCGCACCATTTACCGTGAACATCTACCCCTTCTTGAGTCTCTATGGGAACGATGATTTTCCTTTCGACTA CGCCTTCTTTGATGGAGTACCAAACCCCATAATTGATAATGGGATTCAATACACCAATGTCTTCGATGCGAACTTTGACA CCTTGGTTTCTGCTCTCAAAGCAGCAGGGTATGGAAACATTCCTATTTTGGTAGGAGAAGTAGGGTGGCCTACAGAAGGG GACAAGAACGCCGATGTAGGCAAAGCTCTGAGATTCTACAACGGGCTCCTGCCGAGGCTTGCCGGGAATAAAGGAACCCC GCTCCGGCCCGGATTCATCGAAGTTTATCTCTTCGGACTCATCGATGAGGATGCCAAGAGCATTGCTCCGGGGAACTTCG AGCGCCACTGGGGGATTTTCAGATATGACGGGCAGCCAAAGTTTCCGATGGATCTTTCGGGTCAGGGTCAGAACAAGCTC CTCATAGGTGCACAGAATGTGAAGTATCTTGAACCAAAGTGGTGCATGTTTAACCCTGACGCAAAGGATCTCAGCAAACT CGCGGATAACATTAACTACGCTTGCACCTTTGCAGATTGCACTGCACTTGGGTATGGATCTTCTTGCAACCACCTTGATG CTAATGGGAACGCCTCTTACGCGTTTAACAGTTACTTCCAGGTGCAGAATCAGGATCGCATGGCCTGCAATTTTCAAGGG TTAGCTAAGCTTACTACAGACAATATCTCAACACCATCTTGCAATTTCATTGTTCAGATAGTTTCTTCTTCATCTTCTTC TTTGGTGCCATCTCTTGTAGCTTTCTTATTTATTACCTTATCCTTCATTCTATTTAATTAGGATTGTCCTGTAGATACAT TAGAGATGCCATCAATTTTTTTATTTATAGTTTCATCATTGCTTGGAGATTTGGATGATATAGTTTGCGGATTTATTTTA TAAAAATCAACTAGTTGATGATAGCTCTGGTAGCAAAATTTTGCCTTTTAGTTTTAGACTATGCTCTTTTGTTATCTTAT TTTTGGGTACTTGGTCTTGGAACTTGAATCAAGAGACACATTCTATGTTGCAAATCTTAAACAAAGTGACCCTGTCATAC ATTAGATTCACAGACTAAAATAAAATAAGT
CDS sequence (LotjaGi1g1v0640300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGAAAACTGGGTTTTCCGATGGGTGGTGTTGGTGGTTGCGGCGGCGGTGATGGGCGTGGAAGGGCTTGGTGTGAA CTGGGGAACCCAAGCGACCCACAAGCTGCCACCGGCGACGGTGGTTCAGTTGATGAAGGATAATGGGATTCAGAAGGTGA AGCTTTTTGATGCGGATGATTCCACCATGGCTGCTCTTGCTGGGTCTGGGATTGAAGTCATGGTTGCAATCCCTAATAAT CAGCTTGCTGTCATGAATGACTATGGTCGAGCCAAACAATGGGTTAGGAAGAATGTCACTCGTTACAACTTCAATGGTGG AGTTAACATCAAGTATGTTGCAGTTGGGAATGAGCCATTTTTGAAATCTTACAACAATTCATTCTTGAACATTACTCTAC CTGCACTGCAGAACATTCAAAATGCCCTCAACGAAGCCGGTGTCGGAGATACCGTAAAGGCTACAGTGCCCTTGAATGCT GATGTCTACCAGTCTCCACAGGATAATCCAGTTCCTTCAGCAGGAATATTCAGGCCTGATATCAGTGGTCTCATGACTCA AATGGTGCAATTTCTCAGCAAGAACGGCGCACCATTTACCGTGAACATCTACCCCTTCTTGAGTCTCTATGGGAACGATG ATTTTCCTTTCGACTACGCCTTCTTTGATGGAGTACCAAACCCCATAATTGATAATGGGATTCAATACACCAATGTCTTC GATGCGAACTTTGACACCTTGGTTTCTGCTCTCAAAGCAGCAGGGTATGGAAACATTCCTATTTTGGTAGGAGAAGTAGG GTGGCCTACAGAAGGGGACAAGAACGCCGATGTAGGCAAAGCTCTGAGATTCTACAACGGGCTCCTGCCGAGGCTTGCCG GGAATAAAGGAACCCCGCTCCGGCCCGGATTCATCGAAGTTTATCTCTTCGGACTCATCGATGAGGATGCCAAGAGCATT GCTCCGGGGAACTTCGAGCGCCACTGGGGGATTTTCAGATATGACGGGCAGCCAAAGTTTCCGATGGATCTTTCGGGTCA GGGTCAGAACAAGCTCCTCATAGGTGCACAGAATGTGAAGTATCTTGAACCAAAGTGGTGCATGTTTAACCCTGACGCAA AGGATCTCAGCAAACTCGCGGATAACATTAACTACGCTTGCACCTTTGCAGATTGCACTGCACTTGGGTATGGATCTTCT TGCAACCACCTTGATGCTAATGGGAACGCCTCTTACGCGTTTAACAGTTACTTCCAGGTGCAGAATCAGGATCGCATGGC CTGCAATTTTCAAGGGTTAGCTAAGCTTACTACAGACAATATCTCAACACCATCTTGCAATTTCATTGTTCAGATAGTTT CTTCTTCATCTTCTTCTTTGGTGCCATCTCTTGTAGCTTTCTTATTTATTACCTTATCCTTCATTCTATTTAATTAG
Protein sequence (LotjaGi1g1v0640300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVENWVFRWVVLVVAAAVMGVEGLGVNWGTQATHKLPPATVVQLMKDNGIQKVKLFDADDSTMAALAGSGIEVMVAIPNN QLAVMNDYGRAKQWVRKNVTRYNFNGGVNIKYVAVGNEPFLKSYNNSFLNITLPALQNIQNALNEAGVGDTVKATVPLNA DVYQSPQDNPVPSAGIFRPDISGLMTQMVQFLSKNGAPFTVNIYPFLSLYGNDDFPFDYAFFDGVPNPIIDNGIQYTNVF DANFDTLVSALKAAGYGNIPILVGEVGWPTEGDKNADVGKALRFYNGLLPRLAGNKGTPLRPGFIEVYLFGLIDEDAKSI APGNFERHWGIFRYDGQPKFPMDLSGQGQNKLLIGAQNVKYLEPKWCMFNPDAKDLSKLADNINYACTFADCTALGYGSS CNHLDANGNASYAFNSYFQVQNQDRMACNFQGLAKLTTDNISTPSCNFIVQIVSSSSSSLVPSLVAFLFITLSFILFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 8 | 434 | 427 | 2.3E-243 | – | |
| PANTHER | 8 | 434 | 427 | 2.3E-243 | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Gene3D | 22 | 351 | 330 | 3.7E-117 | – | |
| Pfam | 24 | 343 | 320 | 3.2E-63 | ||
| SUPERFAMILY | 24 | 343 | 320 | 7.37E-79 | ||
| Phobius | 24 | 459 | 436 | - | – | |
| ProSitePatterns | 259 | 272 | 14 | - | ||
| Pfam | 365 | 434 | 70 | 2.0E-17 | ||
| SMART | 365 | 448 | 84 | 3.9E-35 | ||
| TMHMM | 458 | 477 | 20 | - | – | |
| Phobius | 460 | 477 | 18 | - | – | |
| Phobius | 478 | 478 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0640300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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