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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0642000 |
| Transcript ID | LotjaGi1g1v0642000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger protein ING; TAIR: AT1G54390.3 PHD finger protein-like protein; Swiss-Prot: sp|B3H615|ING2_ARATH PHD finger protein ING2; TrEMBL-Plants: tr|I3ST78|I3ST78_LOTJA PHD finger protein ING; Found in the gene: LotjaGi1g1v0642000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119951839..119956984) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAATCCCCGCCTTTTTTTACCTTATAAAAAATACACCTTGCTCATACGACATCGTTTCGAAGCTTTCATCTCCCACA TCGCATCTGAACCAGCAACAATCCTTCTAGGGTTCGCAATCGCAATCACAAACCCTAACCCCTCTCCAATTGCAACAATC ATCCTGCTAAAATGGCAATTGCACGCACTGGAGTCTACGTCGATGACTATTTGGAGTGTAAGCGATTTTTTTTCCCCTTT TTTTGCCCTAATTTCCCCCATTTTTCATGAATTTCTCCTCAATTTCATCGTTGAATTTTCCATCCCCCCAGATGCCAATA CATTGCCTGCTGAGCTTCAGAGACTGCTCAACACCGTCCGTGAACTCGATGAACGATCCCAATGTAAATGCTTTCTCAAA AAATTTGTTTTTTTAATATTAAAATTTTTCATGTGATTTCTTAGGTTTACATCATTGTATTAATTAATTAATTTATTTAT TTCTAATTGTGGTGTTTGTGGTGTGATGAAAGCTATGATAAACCAGACTAGGCAGCAAACAAAGTACTGTATGGGGTTCT CATCACATGGCTCTAGGAAGGGTAATAATCATTACTACAATAGTAACAGTTACGCGAACGAGGATGACGATGCCGCTATT GAGAAAATGCGAAAAGACATCGAGACATATCAGGATAATGCATTGAGTCTGTGTACTGAGAAGGTTTTGTTGGCACGACA AGCATATGAACTGGTGAGCCTCTTTTTTTTCTTTTTATTGTGCTTTTGACTAGGCTATTTATGACTTGGAAAAGAAACTA TTGCTAATGGACGAACACGAAACCTCAAATAGAATGATCGATGGTGATGAAGCTCGTCGAAATGGTTGTAATGGGACATG GCTTAAGATGGGTGAATAAAATAATACCTATAACTGATATGTGCGAGATAGGGGAATGCCTTAATGATAATGTGATTAAA ATTAAATTGCTTTCCAAGTGAGCTTTGAACATAACATATCGGGTAATTTTTTCTGTATTCCTTTAGTACATGTACCCCCG GCCCCCAACTGTCACATTGTGAGTGTGGATGTACATGTACTACTGAGTCTTCAATACTACAAGAGTATTAAAATTTGTTC GTCATCTAGATTGTAATATATAGCTGTTAATGTAAATTAATTATGTATTTGTATGCTTCTTTAAGATGTGCAATTCATCA ATACGTCTAGCCATGTGCAGTCTGGCAGTGTTCTCTTTTACTATGAGTTCTAACAAGGATTACAAGTGTTTTTCCCTTAG AGCTAAGATATATGTTGTCCTCAAACCCTGGCAGAAGAACACTATTCCAAACTTGTATTTTTCAACGAACATGCCATTTT TCGTTTTCCCTCTCTTCTTTTATATGGTTCTGGACCTTTTTCCTTGGGCTTTTCAAGTTCTCGTGGTCCCATCGTTGTAT GTTTTCCCTGTCTTCATGCGGGTAATTCTTCGCTGTGTCCGTTATGTCGTCCTTTCTTCTGTACATGCGGTTGTACCTTT AGTCCCAGGAATCTCTGTTCCACATTGTTTCTCCCTTATGTGTAGTTAAACACATGCTTGCTATGTAATGGAGTTCCTCA GTAACTGTTAAAGCACAATGGAACATATCTTCGTGAATACAACTTTAAAGTCATTGCACCCTCTTCTTATTCAAAGTGTC CCATTATTTTCACCTGATACTTGATGAGGATATTACAATTTTCTTTCAGTTGGAAGTGTATAAACCTGATACTTCTATTT CTTCTTCTTCACAGAGAAGCCCCATTCATCAAATTCAAGGGTGAGATCACTCTTTATGCTGCATTCTGATTGTTTTACAT GAGAATGGGTTGGAAACTGGAAAAACTATTCCAACAAGCAAAAATAGCCCTTAGTAACTTTAACTACGCGGTGAATGATG ATTCCTTATAGGTTTAGGAATTTCATAAAGATTTTTTATTTCCTTTCCCATTAGATTTTACTAATCATTATCTCCTTACA GCAGCCTTTTTATTCCCTCACCATGAAACCAACTGATATCTCCACCAACACACCTCCGAAAATCACCGTCTCATTTTCTC TCAAAAACAGCCGCACTCCTCCATCTTCATCCATTTTCACGATAAAAATACCTCCATTTTCATCATCCAAAATTGTTCAA TTTAAAACAAGAGGACCGTGTTTTATTGCCTCCAAGCACCATAATTGATACTCTTAATAAACGAACCCATTGAACCATTA TTACAAAATTGCCTTCCATATCATCAAAATCTCAGCTATTCAGAAACCCATTTGATATTTCCTTCCTTCTCTGCCTGGAA GTATAATTCGGTCTTTACTTTCCATTTTATCATCCTGACACCACCCACACAGCCACACATTCATCACACCCTCCCCTAAC CTGAAACCCCATTACCCGCCTGAAACCCTAACCCCAACCCCCACTGCACATCCTTCCTCATCCCACTGTGCCCACCTGAA ACCCCAATCCCCATCTTTTTTCTACTTGATGAGAGGAGAGGAAGGATAGAGGAGTTTGCGATTGCTTCAATGGTAGAATG GTGGAGTTGGGCCGCAGAGGCCATGGACGGTGTGATGGTGTCTGGGTTGTGTGGATGGTGGTGGCGGTTGTTCCCTTCTG TGACAATTGCACAATCGCGATAATAGGGGGACTAAAAGTGCAATTAAGCCTATTTTGTTTTTACGACATGCTATATTCAC CTCCTACACATGCACAATATGAAAAAAACTACTTCCTGTTGATTCCAAGGTGAAATAACAGTTCTTATCTTGGAAGTCCT GTGAATTTTCCGCATTTTGCTTCTGCTTATGCATACAAGGAACATTATTCAGCTATAGTTTACAAGTTTCAATCTTCTTT TATTTGCATCAGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTCGCCGAAGATTTAAAGCAAGGTAA AATAGCTGTGTAATTTTCATTCTGATTTTTTGTTGCATCATGTGCACACAAATATTTCCAAAATCAACCTAAATTTACTA TGATCGTGAAGACTTACTACTGTGTTGATTACATATTTTACTGGAAAAGGGATCTGGGATGAGAGTGCCATGAGTGTATT TATTAAGAAAGAATTTATGTCTTTACCCCCTAATCAACGTGCCAATGCCCCTGTATCTTCAAGTAACTAGTTTGTCTAAT TTTTCCACAAAAGTATATTTTGTTTTCTTTGATACCAATAACATGAATATTTGAATTTGAGGTGAAAGAATATGTGGGTA AATGCATTATTGGGTGTTTCTGGACCTATTTAAAGTAGCTTATAATGAATTAGAAAGAAAGTGCAGAAACAAAAGGGAAT ATAGTTTTGGAGATTTGGGAACTTGTTTTTTTATTTTTCTTTCTAAAATGTTATTAAAATAGTTTTTTTGTACTTTATCA ATTTATGATCCTTTTTTTATTCTCTTCTCATTTAATTTCATCAGAGGGAAAAATAGCACAAGATGAACCAGCGATTCTTC CCCCATTGCCTATAGTCCCTAAACCTGAAAAGCGCAGGCAAGTCGTATATGGAACACCTCAATCGAAGAGAATTGATTAC AGGGATAGAGACTGGGATCGGGAACGTGATAGGGACTTTGAGCTAATGCCTCCGCCAGGAAGTCATAAGAAGGACTATGT AATCCCCATGGATGTTGATCAACCCATTGATCCAAATGAGCCAACATACTGTGTTTGTCATCAGGTTCCGATATGCTGTT CATAATACATTTTATCGCTCTTAATCTCCTTCTAGGCTATTACTCCATATTGTCCCTTTGTTTTTGCTTAAAATATTCTA GTAAGAAACTGAGGCTGTTTTATTATCTGATCATTCAGGTATCTTTTGGAGATATGATTGCTTGTGATAATGAAAATGTA AGTACATTTTACTTTGCTCTCTCCTGCGCTGTATGTGTTTTACCTTTTTCTTTTTGTTTGGGGGAACTAGGGTTGGCAGA GTGCAGAATGTATTTAATCTCCTGCATCAAGTGCAATTACTATATGGTGTTCATTCCTTTACAGCTTTTTTTCTACTTTT TGGGTTGCTACATGCCAAAAAAATCTGCCATAGATAATTACAGTTCTTAAAATAAATTGTTAATGAGATCACATAAAAAA ATATGATGCAGCTTAACACTGAGTATCTAACAATGAGGCATGTAACTTAATATTGGTTTGGAATCACTTCTATTACATTT TTTTCTTTTTGATCTTAAGCATTAAGAGGGACTTCGAAGAATTGGAGCTGTTTATTTTATTTTTCGCGGAAAAAATTGAA AAACTGTTGATGGTGGTTAACCGCATACTCACCTGGGTTAACTATTGTATTATAGACTGCCAATCGTCTTTTTATTCAGT AGCTTTTCCCTGCTAAATACCAATCAATGTTAATATTTTTTGTTCTCTCCTTCATTGTTTTTTACTCTGATGTTTACTAT GTTATTCTTGACAGTGCCAAGGTGGTGAATGGTTCCACTATGCTTGTGTTGGCCTGACACAAGAGACAAGGTTCAAGGGG AAGTGGTATTGTCCAACTTGCAGATTACTACCACAATGTCAATGATGAGTCTTTGAACCAGTTAAACTACACTCTTAAAT AGCCATTGTTGTTTGAATATATTTTCTTACTTTTTAGTGAATGCATAATTTTGGAGCTGTATTATGATGGATGGGGTAAG TTTATTGCAAATCCCCTTGTAACCCTTTCCCTCCTTCCTCCCCGCCCTGCTTAGAAAACACACGTGGGGTTCGACTTATT TCTCTTGTGTTTTGCTTGGCCACTTGTGTTGTGAGCTCTGTCATGCCATGTATAAAGAAGTCCTAAGACTTGCAAGATAC GGTTCTAGATTTGAATTAGGGAGAAGGTTCATTACTTGTACGTGAAATGCAAAAGTAGAGGCCTTTGTTAAGAAATCTTT CTATTGCTCTAAAATTTTAGTTAGTTCATGAAATAAAGAGAATGGAATGAAATAAGATTTGCTATGACCCAAAAAACATT TGAAAGATTTGTTTCTTCTTGATGCTATGAGAATGAAAAATGTTAAGTTATGTCTGATAAATCTGATGTATATTATAATA ATGTGTGAGTACAGTTTTGTGTCATT
CDS sequence (LotjaGi1g1v0642000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTGCACGCACTGGAGTCTACGTCGATGACTATTTGGAGTATGCCAATACATTGCCTGCTGAGCTTCAGAGACT GCTCAACACCGTCCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAGACTAGGCAGCAAACAAAGTACTGTATGG GGTTCTCATCACATGGCTCTAGGAAGGGTAATAATCATTACTACAATAGTAACAGTTACGCGAACGAGGATGACGATGCC GCTATTGAGAAAATGCGAAAAGACATCGAGACATATCAGGATAATGCATTGAGTCTGTGTACTGAGAAGGTTTTGTTGGC ACGACAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTCGCCGAAGATTTAAAGC AAGAGGGAAAAATAGCACAAGATGAACCAGCGATTCTTCCCCCATTGCCTATAGTCCCTAAACCTGAAAAGCGCAGGCAA GTCGTATATGGAACACCTCAATCGAAGAGAATTGATTACAGGGATAGAGACTGGGATCGGGAACGTGATAGGGACTTTGA GCTAATGCCTCCGCCAGGAAGTCATAAGAAGGACTATGTAATCCCCATGGATGTTGATCAACCCATTGATCCAAATGAGC CAACATACTGTGTTTGTCATCAGGTATCTTTTGGAGATATGATTGCTTGTGATAATGAAAATTGCCAAGGTGGTGAATGG TTCCACTATGCTTGTGTTGGCCTGACACAAGAGACAAGGTTCAAGGGGAAGTGGTATTGTCCAACTTGCAGATTACTACC ACAATGTCAATGA
Protein sequence (LotjaGi1g1v0642000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSRKGNNHYYNSNSYANEDDDA AIEKMRKDIETYQDNALSLCTEKVLLARQAYELIDSHVKRLDEDLNNFAEDLKQEGKIAQDEPAILPPLPIVPKPEKRRQ VVYGTPQSKRIDYRDRDWDRERDRDFELMPPPGSHKKDYVIPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEW FHYACVGLTQETRFKGKWYCPTCRLLPQCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 1.2E-82 | ||
| PANTHER | 1 | 266 | 266 | 1.2E-82 | – | |
| Pfam | 9 | 128 | 120 | 3.6E-17 | ||
| SMART | 9 | 128 | 120 | 2.9E-29 | ||
| CDD | 19 | 125 | 107 | 1.15078E-36 | – | |
| Coils | 24 | 44 | 21 | - | – | |
| Coils | 75 | 95 | 21 | - | – | |
| SUPERFAMILY | 192 | 265 | 74 | 2.06E-20 | ||
| Gene3D | 208 | 265 | 58 | 1.4E-25 | ||
| ProSiteProfiles | 214 | 266 | 53 | 8.831 | ||
| SMART | 216 | 264 | 49 | 1.6E-10 | ||
| CDD | 216 | 263 | 48 | 6.9079E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0642000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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