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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0645700 |
| Transcript ID | LotjaGi1g1v0645700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein restricted tev movement 2; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UC01|RTM2D_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|G7L0H2|G7L0H2_MEDTR Hsp20/alpha crystallin family protein; Found in the gene: LotjaGi1g1v0645700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120270506..120271526) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGGTTAACAAGGAATAATTCTTGTTCATTTCATGTGATGAACTCTAATCAAAAGGCAACTTGGAAGCCCCTTATTCC AACATTCAAATCTCTTCTATACATTCTATCAAATAAACTCAGAGAGACATCCAAACATTAATTGGTCCCCTTCAATCTAA AACCAAATCACACACTATATTGACTTTAGCAATTAAATGGAAGCCAAGCATGCACATAATCGGACTTATGAGGATTTTGA TCCCGTGTTTAAGTGGCGTAGAGAAGAGACCCGTGACACCATTGAGCTTTATCTTCCAGGCATGTTGCATTTGTCTAATT AAATTGCATGAGTATTAGCTGTTTCTTTTAATTTGTGAACTAAATTTTTCTTGGTCCATGTTAATTTGTTTTCAGCGTTT AAGAGAGAGCAAGTACGAATCAAGATCAATCATGTTGGTCTTTTGGTAATAAGTGGGGAGCATCATTTGAGTGGAACTAG ATGGAGACGTTTCAAGAAAGAATTTGAAATACCAAAATACTGTAATGAAGATGCAGTTCATGGCAATTTCATGCAGAACA TTCTTTCTGTGGTACTGCCAAAGAAAATTCCACTAATTCCTCAAGAGGATCATGAAACACCAATCCCCGAATTTGAACAC GAGAAAGAGGAGGAGGAGGAGAAGGAGAAGGAGAAAGAGGCATATCAGAAAATGGGACATGGAGCCAGAGAAGTAGTAGC AGAAGAAACAGCTCGCTCAATAGACAACCAGTTAGCAGAAAATGATGTGGGGTTAACACTTGAAACTACTAGAGAGGTTG CCTTCAAATTCATGGTTGTGATCATTGTTATTTTGCTTATTGTGAGCTACCTAGCAGACATGAGCAAACGCATCATGGCT CAAGCTCAATCATATTTACAGAATTAATTGAGGCTCTGGTTTAAGGTGGTTCTGTAAATTTTAATACTGGGAACAAAAAT TCAAATCTATCATGTTATTATATTTCTTCCACAAAAGTTTCGCAAAATAATCAGGTACGAG
CDS sequence (LotjaGi1g1v0645700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCAAGCATGCACATAATCGGACTTATGAGGATTTTGATCCCGTGTTTAAGTGGCGTAGAGAAGAGACCCGTGA CACCATTGAGCTTTATCTTCCAGCGTTTAAGAGAGAGCAAGTACGAATCAAGATCAATCATGTTGGTCTTTTGGTAATAA GTGGGGAGCATCATTTGAGTGGAACTAGATGGAGACGTTTCAAGAAAGAATTTGAAATACCAAAATACTGTAATGAAGAT GCAGTTCATGGCAATTTCATGCAGAACATTCTTTCTGTGGTACTGCCAAAGAAAATTCCACTAATTCCTCAAGAGGATCA TGAAACACCAATCCCCGAATTTGAACACGAGAAAGAGGAGGAGGAGGAGAAGGAGAAGGAGAAAGAGGCATATCAGAAAA TGGGACATGGAGCCAGAGAAGTAGTAGCAGAAGAAACAGCTCGCTCAATAGACAACCAGTTAGCAGAAAATGATGTGGGG TTAACACTTGAAACTACTAGAGAGGTTGCCTTCAAATTCATGGTTGTGATCATTGTTATTTTGCTTATTGTGAGCTACCT AGCAGACATGAGCAAACGCATCATGGCTCAAGCTCAATCATATTTACAGAATTAA
Protein sequence (LotjaGi1g1v0645700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAKHAHNRTYEDFDPVFKWRREETRDTIELYLPAFKREQVRIKINHVGLLVISGEHHLSGTRWRRFKKEFEIPKYCNED AVHGNFMQNILSVVLPKKIPLIPQEDHETPIPEFEHEKEEEEEKEKEKEAYQKMGHGAREVVAEETARSIDNQLAENDVG LTLETTREVAFKFMVVIIVILLIVSYLADMSKRIMAQAQSYLQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 1.7E-80 | – | |
| PANTHER | 1 | 204 | 204 | 1.7E-80 | – | |
| Phobius | 1 | 168 | 168 | - | – | |
| Gene3D | 2 | 133 | 132 | 1.3E-13 | ||
| ProSiteProfiles | 8 | 112 | 105 | 15.664 | ||
| SUPERFAMILY | 8 | 99 | 92 | 5.23E-12 | ||
| Pfam | 20 | 102 | 83 | 1.2E-6 | ||
| CDD | 24 | 97 | 74 | 1.9395E-11 | – | |
| Coils | 114 | 134 | 21 | - | – | |
| TMHMM | 169 | 188 | 20 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 204 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0645700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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