Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0646800 |
| Transcript ID | LotjaGi1g1v0646800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT2G43770.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein; TrEMBL-Plants: tr|V7CX72|V7CX72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0646800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120420873..120421910) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAGCTTTTCCTGGTGAAGGTGGAAGTGCTTTGTCAGTTGTCGGTCCAAGGCCTATGGAATGGTCTACTGTTCCATA TAGTGGTCCTCAGGGTCCTGGGTCAAATGGAAAGCAGCGGACCTCAAGTTTGGAATCGCCAATCATGTTGCTGACAGGTC ACCAGAGCGTTATATATACCATGAAGTTCAACCCAGCAGGAACAGTCATTGCATCTGGTTCGCATGACAGAGAAATTTTC CTCTGGAATGTGCATGGGGAATGCAAGAACTTCATGGTTCTAAAAGGTCACAAGAATGCAGTTTTAGATCTTCACTGGAC TACAGATGGGACACAGATAGTCTCTGCCAGCCCTGATAAAACAGTGAGGGTATGGGATGTGGAAACAGGAAAACAAGTCA AGAAGATGGTAGAGCATCTCTCATACGTGAATTCTTGTTGTCCTTCCAGGAGGGGGCCACCTCTTGTTGTCAGCGGCTCT GATGATGGAACTGCAAAATTGTGGGACATGCGTCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATCACGGC TGTCGGCTTCGCTGATGCTTCAGATAAGATCTTCACCGGTGGTATTGATAATGATGTCAAGGTATGGGATTTGCGCAAAG GTGAGGTTATCATGACACTTCAAGGTCACCAAGACATGATTACTGGAATGCAACTGAGTCCTGATGGTTCCTATCTTCTA ACAAATGCCATGGACTGCAAGCTTTGCATTTGGGATATGCGCCCATACGCTCCCCAGAACCGCTGTGTGAAGGTGTTTGA AGGGCACCAACACAATTTTGAGAAGAACTTGTTGAAATGTAGCTGGTCACCTGATGGAAGCAAGGTCACAGCTGGTAGTT CTGATAGAATGGTTTACATCTGGGACACCACTTCTAGGCGCATCTTGTATAAGCTCCCTGGGCATAACGGATCTGTTAAT GAGTGTGCTTTTCATCCCAATGAACCTATTGTTGGATCTTGCAGTAGTGACAAGCAGATTTATCTGGGGGAGATATGA
CDS sequence (LotjaGi1g1v0646800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCTTTTCCTGGTGAAGGTGGAAGTGCTTTGTCAGTTGTCGGTCCAAGGCCTATGGAATGGTCTACTGTTCCATA TAGTGGTCCTCAGGGTCCTGGGTCAAATGGAAAGCAGCGGACCTCAAGTTTGGAATCGCCAATCATGTTGCTGACAGGTC ACCAGAGCGTTATATATACCATGAAGTTCAACCCAGCAGGAACAGTCATTGCATCTGGTTCGCATGACAGAGAAATTTTC CTCTGGAATGTGCATGGGGAATGCAAGAACTTCATGGTTCTAAAAGGTCACAAGAATGCAGTTTTAGATCTTCACTGGAC TACAGATGGGACACAGATAGTCTCTGCCAGCCCTGATAAAACAGTGAGGGTATGGGATGTGGAAACAGGAAAACAAGTCA AGAAGATGGTAGAGCATCTCTCATACGTGAATTCTTGTTGTCCTTCCAGGAGGGGGCCACCTCTTGTTGTCAGCGGCTCT GATGATGGAACTGCAAAATTGTGGGACATGCGTCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATCACGGC TGTCGGCTTCGCTGATGCTTCAGATAAGATCTTCACCGGTGGTATTGATAATGATGTCAAGGTATGGGATTTGCGCAAAG GTGAGGTTATCATGACACTTCAAGGTCACCAAGACATGATTACTGGAATGCAACTGAGTCCTGATGGTTCCTATCTTCTA ACAAATGCCATGGACTGCAAGCTTTGCATTTGGGATATGCGCCCATACGCTCCCCAGAACCGCTGTGTGAAGGTGTTTGA AGGGCACCAACACAATTTTGAGAAGAACTTGTTGAAATGTAGCTGGTCACCTGATGGAAGCAAGGTCACAGCTGGTAGTT CTGATAGAATGGTTTACATCTGGGACACCACTTCTAGGCGCATCTTGTATAAGCTCCCTGGGCATAACGGATCTGTTAAT GAGTGTGCTTTTCATCCCAATGAACCTATTGTTGGATCTTGCAGTAGTGACAAGCAGATTTATCTGGGGGAGATATGA
Protein sequence (LotjaGi1g1v0646800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAFPGEGGSALSVVGPRPMEWSTVPYSGPQGPGSNGKQRTSSLESPIMLLTGHQSVIYTMKFNPAGTVIASGSHDREIF LWNVHGECKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDKTVRVWDVETGKQVKKMVEHLSYVNSCCPSRRGPPLVVSGS DDGTAKLWDMRQRGSIQTFPDKYQITAVGFADASDKIFTGGIDNDVKVWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLL TNAMDCKLCIWDMRPYAPQNRCVKVFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVN ECAFHPNEPIVGSCSSDKQIYLGEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 345 | 327 | 3.8E-166 | – | |
| PANTHER | 19 | 345 | 327 | 3.8E-166 | – | |
| MobiDBLite | 22 | 42 | 21 | - | – | |
| MobiDBLite | 28 | 42 | 15 | - | – | |
| SMART | 44 | 83 | 40 | 2.4E-7 | ||
| Gene3D | 47 | 345 | 299 | 1.0E-106 | ||
| Pfam | 47 | 83 | 37 | 1.9E-5 | ||
| SUPERFAMILY | 48 | 342 | 295 | 1.78E-85 | ||
| ProSiteProfiles | 51 | 345 | 295 | 57.344 | ||
| CDD | 51 | 342 | 292 | 4.44486E-76 | – | |
| ProSiteProfiles | 51 | 84 | 34 | 14.619 | ||
| ProSitePatterns | 70 | 84 | 15 | - | ||
| PRINTS | 70 | 84 | 15 | 1.1E-8 | ||
| SMART | 87 | 126 | 40 | 8.9E-10 | ||
| Pfam | 89 | 126 | 38 | 3.0E-6 | ||
| ProSiteProfiles | 94 | 135 | 42 | 17.727 | ||
| PRINTS | 113 | 127 | 15 | 1.1E-8 | ||
| ProSitePatterns | 113 | 127 | 15 | - | ||
| SMART | 129 | 169 | 41 | 1.5E-7 | ||
| Pfam | 131 | 169 | 39 | 5.9E-4 | ||
| ProSiteProfiles | 155 | 178 | 24 | 10.141 | ||
| ProSitePatterns | 156 | 170 | 15 | - | ||
| PRINTS | 156 | 170 | 15 | 1.1E-8 | ||
| SMART | 172 | 210 | 39 | 0.0095 | ||
| ProSiteProfiles | 185 | 219 | 35 | 11.745 | ||
| ProSitePatterns | 197 | 211 | 15 | - | ||
| SMART | 213 | 252 | 40 | 2.5E-8 | ||
| Pfam | 215 | 252 | 38 | 2.4E-5 | ||
| ProSiteProfiles | 220 | 254 | 35 | 13.316 | ||
| SMART | 259 | 302 | 44 | 5.9E-7 | ||
| Pfam | 261 | 302 | 42 | 1.4E-6 | ||
| ProSiteProfiles | 281 | 311 | 31 | 11.043 | ||
| ProSitePatterns | 289 | 303 | 15 | - | ||
| SMART | 305 | 344 | 40 | 3.5E-4 | ||
| Pfam | 308 | 342 | 35 | 0.006 | ||
| ProSiteProfiles | 312 | 345 | 34 | 9.573 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0646800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…